RID=1168941912-28140-93528695736.BLASTQ4, Contig231

Alignments
 

>gi|113205349|gb|AAT38786.2|  Gag-pol polyprotein, putative [Solanum demissum]
Length=1140

 Score = 84.3 bits (207),  Expect(3) = 5e-28
 Identities = 39/81 (48%), Positives = 62/81 (76%), Gaps = 0/81 (0%)
 Frame = +2

Query  110  LKENATQAQVKQYVEDIAKRYRALSFKHSTVSESVFNRIMGCETANEALSKLEKEFLGSA  289
            L+ N T  Q++ + E+IAK  +ALSF H+ VS+S+F RIM CE+A E+   L++EF GS 
Sbjct  47   LRANPTLQQIRSHEEEIAKGPKALSFIHAAVSDSIFTRIMTCESAKESWDMLKQEFQGSD  106

Query  290  RSKQVRLQNLKRKYELLRMKE  352
            R++Q+++ NL++++E+LRMKE
Sbjct  107  RTRQMQILNLRKEFEMLRMKE  127


 Score = 47.0 bits (110),  Expect(3) = 5e-28
 Identities = 17/63 (26%), Positives = 44/63 (69%), Gaps = 0/63 (0%)
 Frame = +3

Query  348  KRIMTIXEFVEDLMKLVNQIRLMGDSLIDLKVVEKIMLSLPERVDPTITYLEPGXXITEL  527
            K    + ++++ +MK+ NQIRL+G+ + + ++VEK++++LPE+ +  I+ +E    ++ +
Sbjct  126  KETEKVKDYIDRIMKIFNQIRLLGEKVEEQRIVEKVIVTLPEKFEAKISSIEDTWDMSRV  185

Query  528  SIS  536
            +++
Sbjct  186  TLN  188


 Score = 32.7 bits (73),  Expect(3) = 5e-28
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 0/24 (0%)
 Frame = +1

Query  25  Q*WAIKMKAFLRGVNLWNAVEFRN  96
           Q WA+KMK +L+G+ LW  VE  N
Sbjct  19  QVWAVKMKTYLKGLGLWKYVEEDN  42


>gi|92880530|gb|ABE85744.1|  Peptidase S8 and S53, subtilisin, kexin, sedolisin; Zinc finger, 
CCHC-type [Medicago truncatula]
Length=557

 Score = 70.9 bits (172),  Expect(3) = 1e-22
 Identities = 32/81 (39%), Positives = 57/81 (70%), Gaps = 0/81 (0%)
 Frame = +2

Query  110  LKENATQAQVKQYVEDIAKRYRALSFKHSTVSESVFNRIMGCETANEALSKLEKEFLGSA  289
            L  N T AQ++ + +++AK  RAL+  H+ + + +F +I+  E A EA +KL +E+ GS 
Sbjct  23   LPNNPTLAQIRNHSDEVAKEGRALAIIHAALHDDIFIKILNLEIAKEAWNKLMEEYQGSE  82

Query  290  RSKQVRLQNLKRKYELLRMKE  352
            R+K++++ NL+R++E L+MKE
Sbjct  83   RTKKMKVLNLRREFEALKMKE  103


 Score = 52.0 bits (123),  Expect(3) = 1e-22
 Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 0/62 (0%)
 Frame = +3

Query  348  KRIMTIXEFVEDLMKLVNQIRLMGDSLIDLKVVEKIMLSLPERVDPTITYLEPGXXITEL  527
            K   T+ EF + + K++ QIRL+G+ L D +VVEKI++ LPE  +  I+ LE     +E+
Sbjct  102  KETETVREFSDRISKVITQIRLLGEDLSDQRVVEKILVCLPEMFEAKISSLEENKNFSEI  161

Query  528  SI  533
            ++
Sbjct  162  TV  163


 Score = 22.7 bits (47),  Expect(3) = 1e-22
 Identities = 9/18 (50%), Positives = 12/18 (66%), Gaps = 0/18 (0%)
 Frame = +1

Query  43  MKAFLRGVNLWNAVEFRN  96
           MK +LR  +LW+ VE  N
Sbjct  1   MKTYLRAQSLWDVVEKGN  18


>gi|113205352|gb|AAT38797.2|  Polyprotein, putative [Solanum demissum]
Length=1793

 Score = 76.3 bits (186),  Expect(2) = 6e-22
 Identities = 37/91 (40%), Positives = 62/91 (68%), Gaps = 0/91 (0%)
 Frame = +2

Query  83   LSSETELLVLKENATQAQVKQYVEDIAKRYRALSFKHSTVSESVFNRIMGCETANEALSK  262
            ++ +  L  L EN T AQ+K   E+  K+ +A S   + V++SVF RIM C+TA EA  +
Sbjct  151  VTEDKPLAALPENPTLAQIKSNNEEKTKKSKAKSLMQNAVADSVFYRIMACKTAKEAWDR  210

Query  263  LEKEFLGSARSKQVRLQNLKRKYELLRMKEN  355
            L++E+ GS R++Q+++ NLKR++E L M+++
Sbjct  211  LKEEYQGSDRTRQMQVLNLKREFECLNMQDD  241


 Score = 47.4 bits (111),  Expect(2) = 6e-22
 Identities = 20/58 (34%), Positives = 38/58 (65%), Gaps = 0/58 (0%)
 Frame = +3

Query  360  TIXEFVEDLMKLVNQIRLMGDSLIDLKVVEKIMLSLPERVDPTITYLEPGXXITELSI  533
            TI ++ + +  +VN IRL+G+   D ++VEK++++LPER +  I+  E    + +LS+
Sbjct  243  TISKYADRISLIVNNIRLLGEEFTDKRIVEKVLVTLPERFESKISSFEKSKDLGKLSL  300


>gi|115480866|ref|NP_001064026.1|  Os10g0106900 [Oryza sativa (japonica cultivar-group)]
 gi|18542917|gb|AAL75752.1|AC037197_10  Putative copia-type polyprotein [Oryza sativa (japonica cultivar-group)]
 gi|31429795|gb|AAP51797.1|  retrotransposon protein, putative, Ty1-copia subclass [Oryza 
sativa (japonica cultivar-group)]
 gi|113638635|dbj|BAF25940.1|  Os10g0106900 [Oryza sativa (japonica cultivar-group)]
Length=1350

 Score = 57.0 bits (136),  Expect(3) = 2e-17
 Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 0/80 (0%)
 Frame = +2

Query  116  ENATQAQVKQYVEDIAKRYRALSFKHSTVSESVFNRIMGCETANEALSKLEKEFLGSARS  295
            E  T  Q K   ED     +AL      V+ES+F RI+G + + EA  KL++EF GS + 
Sbjct  45   ETLTAEQKKSLAEDRMSDAKALFLIQQGVAESLFPRIIGAKKSKEAWDKLKEEFQGSQKV  104

Query  296  KQVRLQNLKRKYELLRMKEN  355
              V+LQ L+R+++ L MKE+
Sbjct  105  LAVKLQTLRRQFQNLLMKES  124


 Score = 46.6 bits (109),  Expect(3) = 2e-17
 Identities = 20/57 (35%), Positives = 39/57 (68%), Gaps = 0/57 (0%)
 Frame = +3

Query  363  IXEFVEDLMKLVNQIRLMGDSLIDLKVVEKIMLSLPERVDPTITYLEPGXXITELSI  533
            + ++   ++++VNQ+RL G+ + D KVVEKI++SLPE+ +  +  +E    ++ L+I
Sbjct  127  VKDYFPRVIEIVNQMRLYGEDINDQKVVEKILISLPEKYEYIVAAIEESKDLSTLTI  183


 Score = 24.6 bits (52),  Expect(3) = 2e-17
 Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 0/19 (0%)
 Frame = +1

Query  31  WAIKMKAFLRGVNLWNAVE  87
           W+IKM+  L    LW+ VE
Sbjct  17  WSIKMRTLLLSQGLWDIVE  35


>gi|18071369|gb|AAL58228.1|AC084762_2  putative gag-pol polyprotein [Oryza sativa]
 gi|108708461|gb|ABF96256.1|  retrotransposon protein, putative, unclassified [Oryza sativa 
(japonica cultivar-group)]
Length=1167

 Score = 57.0 bits (136),  Expect(3) = 2e-17
 Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 0/80 (0%)
 Frame = +2

Query  116  ENATQAQVKQYVEDIAKRYRALSFKHSTVSESVFNRIMGCETANEALSKLEKEFLGSARS  295
            E  T  Q K   ED     +AL      V+ES+F RI+G + + EA  KL++EF GS + 
Sbjct  45   ETLTAEQKKSLAEDRMSDAKALFLIQQGVAESLFPRIIGAKKSKEAWDKLKEEFQGSQKV  104

Query  296  KQVRLQNLKRKYELLRMKEN  355
              V+LQ L+R+++ L MKE+
Sbjct  105  LAVKLQTLRRQFQNLLMKES  124


 Score = 46.6 bits (109),  Expect(3) = 2e-17
 Identities = 20/57 (35%), Positives = 39/57 (68%), Gaps = 0/57 (0%)
 Frame = +3

Query  363  IXEFVEDLMKLVNQIRLMGDSLIDLKVVEKIMLSLPERVDPTITYLEPGXXITELSI  533
            + ++   ++++VNQIRL G+ + D KVVE+I++SLPE+ +  +  +E    ++ L+I
Sbjct  127  VKDYFSRVIEIVNQIRLYGEDINDQKVVEEILISLPEKYEYIVAAIEESKDLSTLTI  183


 Score = 24.6 bits (52),  Expect(3) = 2e-17
 Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 0/19 (0%)
 Frame = +1

Query  31  WAIKMKAFLRGVNLWNAVE  87
           W+IKM+  L    LW+ VE
Sbjct  17  WSIKMRTLLLSQGLWDIVE  35


>gi|116309302|emb|CAH66391.1|  OSIGBa0134J07.9 [Oryza sativa (indica cultivar-group)]
Length=1314

 Score = 57.0 bits (136),  Expect(3) = 3e-17
 Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 0/80 (0%)
 Frame = +2

Query  116  ENATQAQVKQYVEDIAKRYRALSFKHSTVSESVFNRIMGCETANEALSKLEKEFLGSARS  295
            E  T  Q K   ED     +AL      V+ES+F RI+G + + EA  KL++EF GS + 
Sbjct  45   ETLTAEQKKSLAEDRMSDAKALFLIQQGVAESLFPRIIGAKKSKEAWDKLKEEFQGSQKV  104

Query  296  KQVRLQNLKRKYELLRMKEN  355
              V+LQ L+R+++ L MKE+
Sbjct  105  LAVKLQTLRRQFQNLLMKES  124


 Score = 47.0 bits (110),  Expect(3) = 3e-17
 Identities = 20/57 (35%), Positives = 39/57 (68%), Gaps = 0/57 (0%)
 Frame = +3

Query  363  IXEFVEDLMKLVNQIRLMGDSLIDLKVVEKIMLSLPERVDPTITYLEPGXXITELSI  533
            + ++   ++++VNQ+RL G+ + D KVVEKI++SLPE+ +  +  +E    ++ L+I
Sbjct  127  VKDYFSRVIEIVNQMRLYGEDINDQKVVEKILISLPEKYEYIVAAIEESKDLSTLTI  183


 Score = 23.5 bits (49),  Expect(3) = 3e-17
 Identities = 8/19 (42%), Positives = 12/19 (63%), Gaps = 0/19 (0%)
 Frame = +1

Query  31  WAIKMKAFLRGVNLWNAVE  87
           W+IKM+  L    LW+ V+
Sbjct  17  WSIKMRTLLLSQGLWDIVD  35


>gi|48843818|gb|AAT47077.1|  putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length=1136

 Score = 57.4 bits (137),  Expect(3) = 3e-17
 Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 0/80 (0%)
 Frame = +2

Query  116  ENATQAQVKQYVEDIAKRYRALSFKHSTVSESVFNRIMGCETANEALSKLEKEFLGSARS  295
            E  T  Q K  VED     +AL      V+ES+F RI+G + + EA  KL++EF  S + 
Sbjct  45   ETLTAEQKKSLVEDRMSDAKALFLIQQGVAESLFPRIIGAKKSKEAWDKLKEEFQASQKV  104

Query  296  KQVRLQNLKRKYELLRMKEN  355
              V+LQ L+R+++ L+MKE+
Sbjct  105  LAVKLQTLRRQFQNLQMKES  124


 Score = 45.4 bits (106),  Expect(3) = 3e-17
 Identities = 19/57 (33%), Positives = 39/57 (68%), Gaps = 0/57 (0%)
 Frame = +3

Query  363  IXEFVEDLMKLVNQIRLMGDSLIDLKVVEKIMLSLPERVDPTITYLEPGXXITELSI  533
            + ++   ++++VNQ+RL G+ + D KVV+KI++SLPE+ +  +  +E    ++ L+I
Sbjct  127  VKDYFSRVIEIVNQMRLYGEDINDQKVVKKILISLPEKYEYIVAAIEESKDLSTLTI  183


 Score = 24.6 bits (52),  Expect(3) = 3e-17
 Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 0/19 (0%)
 Frame = +1

Query  31  WAIKMKAFLRGVNLWNAVE  87
           W+IKM+  L    LW+ VE
Sbjct  17  WSIKMRTLLLSQGLWDIVE  35


>gi|77553024|gb|ABA95820.1|  retrotransposon protein, putative, unclassified [Oryza sativa 
(japonica cultivar-group)]
Length=1142

 Score = 55.5 bits (132),  Expect(3) = 4e-17
 Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 0/80 (0%)
 Frame = +2

Query  116  ENATQAQVKQYVEDIAKRYRALSFKHSTVSESVFNRIMGCETANEALSKLEKEFLGSARS  295
            E  T  Q K   ED     +AL      V+ES+F RI+G + + +A  KL++EF GS + 
Sbjct  45   ETLTAEQKKSLAEDRMSDAKALFLIQQGVAESLFPRIIGAKKSKKAWDKLKEEFQGSQKV  104

Query  296  KQVRLQNLKRKYELLRMKEN  355
              V+LQ L+R+++ L MKE+
Sbjct  105  LAVKLQTLRRQFQNLLMKES  124


 Score = 47.0 bits (110),  Expect(3) = 4e-17
 Identities = 20/57 (35%), Positives = 39/57 (68%), Gaps = 0/57 (0%)
 Frame = +3

Query  363  IXEFVEDLMKLVNQIRLMGDSLIDLKVVEKIMLSLPERVDPTITYLEPGXXITELSI  533
            + ++   ++++VNQ+RL G+ + D KVVEKI++SLPE+ +  +  +E    ++ L+I
Sbjct  127  VKDYFSRVIEIVNQMRLYGEDINDQKVVEKILISLPEKYEYIVAAIEESKDLSTLTI  183


 Score = 24.6 bits (52),  Expect(3) = 4e-17
 Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 0/19 (0%)
 Frame = +1

Query  31  WAIKMKAFLRGVNLWNAVE  87
           W+IKM+  L    LW+ VE
Sbjct  17  WSIKMRTLLLSQGLWDIVE  35


>gi|31249765|gb|AAP46257.1|  putative polyprotein [Oryza sativa (japonica cultivar-group)]
 gi|108711922|gb|ABF99717.1|  retrotransposon protein, putative, unclassified [Oryza sativa 
(japonica cultivar-group)]
Length=1335

 Score = 57.0 bits (136),  Expect(3) = 1e-16
 Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 0/80 (0%)
 Frame = +2

Query  116  ENATQAQVKQYVEDIAKRYRALSFKHSTVSESVFNRIMGCETANEALSKLEKEFLGSARS  295
            E  T  Q K   ED     +AL      V+ES+F RI+G + + EA  KL++EF GS + 
Sbjct  45   ETLTAEQKKSLAEDRMSDAKALFLIQQGVAESLFPRIIGAKKSKEAWDKLKEEFQGSQKV  104

Query  296  KQVRLQNLKRKYELLRMKEN  355
              V+LQ L+R+++ L MKE+
Sbjct  105  LAVKLQTLRRQFQNLLMKES  124


 Score = 43.9 bits (102),  Expect(3) = 1e-16
 Identities = 19/57 (33%), Positives = 38/57 (66%), Gaps = 0/57 (0%)
 Frame = +3

Query  363  IXEFVEDLMKLVNQIRLMGDSLIDLKVVEKIMLSLPERVDPTITYLEPGXXITELSI  533
            + ++   ++++VNQ+RL G+ + D KVVEKI++SLPE+ +  +   E    +++ S+
Sbjct  127  VKDYFSRVIEIVNQMRLYGEDINDQKVVEKILISLPEKYEYIVAATEESKDLSKDSL  183


 Score = 24.6 bits (52),  Expect(3) = 1e-16
 Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 0/19 (0%)
 Frame = +1

Query  31  WAIKMKAFLRGVNLWNAVE  87
           W+IKM+  L    LW+ VE
Sbjct  17  WSIKMRTLLLSQGLWDIVE  35


>gi|9294121|dbj|BAB01972.1|  copia-like retrotransposable element [Arabidopsis thaliana]
Length=1499

 Score = 58.9 bits (141),  Expect(2) = 2e-16
 Identities = 36/104 (34%), Positives = 57/104 (54%), Gaps = 7/104 (6%)
 Frame = +2

Query  41   K*RHF*EVLTSGMLLSSETELLVLKENATQAQVKQYVEDIAKRYRALSFKHSTVSESVFN  220
            K R   +V+ +G+  +S  E        + A  ++  + + K   AL    S VS+S+F 
Sbjct  29   KTRKLWDVIENGVTSNSSPE-------TSPALTRERDDQVMKDMMALQILQSAVSDSIFP  81

Query  221  RIMGCETANEALSKLEKEFLGSARSKQVRLQNLKRKYELLRMKE  352
            RI    +A EA + LE EF GS++ K + LQ L+R+YE L+M+E
Sbjct  82   RIAPASSATEAWNALEMEFQGSSQVKMINLQTLRREYENLKMEE  125


 Score = 45.8 bits (107),  Expect(2) = 2e-16
 Identities = 21/59 (35%), Positives = 38/59 (64%), Gaps = 0/59 (0%)
 Frame = +3

Query  360  TIXEFVEDLMKLVNQIRLMGDSLIDLKVVEKIMLSLPERVDPTITYLEPGXXITELSIS  536
            TI +F   L+ L NQ+R+ G+   D +VV+KI++S+P++ D  +  LE    ++ LS++
Sbjct  128  TINDFTTKLINLSNQLRVHGEEKSDYQVVQKILISVPQQFDSIVGVLEQTKDLSTLSVT  186


>gi|92868783|gb|ABE78751.1|  Peptidase S8 and S53, subtilisin, kexin, sedolisin; Integrase, 
catalytic region; Zinc finger, CCHC-type; Peptidase aspartic, 
catalytic [Medicago truncatula]
Length=1288

 Score = 57.8 bits (138),  Expect(2) = 3e-16
 Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 0/99 (0%)
 Frame = +2

Query  59   EVLTSGMLLSSETELLVLKENATQAQVKQYVEDIAKRYRALSFKHSTVSESVFNRIMGCE  238
            E L     +  + E+  L  N T AQ+K + E   K+ +A S   + VSE+VF RIM  +
Sbjct  32   EALDVWEAIEEDYEVPPLPNNPTMAQLKFHKEKKTKKAKAKSCLFAGVSETVFTRIMTLK  91

Query  239  TANEALSKLEKEFLGSARSKQVRLQNLKRKYELLRMKEN  355
            T       L++E+ G  R + +++ NL R++EL +MKE+
Sbjct  92   TPKAIWDYLKEEYAGDERIRSMQVLNLMREFELQKMKES  130


 Score = 46.6 bits (109),  Expect(2) = 3e-16
 Identities = 19/63 (30%), Positives = 41/63 (65%), Gaps = 0/63 (0%)
 Frame = +3

Query  348  KRIMTIXEFVEDLMKLVNQIRLMGDSLIDLKVVEKIMLSLPERVDPTITYLEPGXXITEL  527
            K   TI E+ + L+ + N++RL+G    D ++VEKI++++PER + ++  LE    + ++
Sbjct  128  KESETIKEYSDKLLSIANKVRLLGTRFADSRIVEKILVTVPERYEASLASLENTKDLCKI  187

Query  528  SIS  536
            +++
Sbjct  188  TLA  190


 Score = 30.0 bits (66),  Expect = 5.2
 Identities = 9/19 (47%), Positives = 16/19 (84%), Gaps = 0/19 (0%)
 Frame = +1

Query  31  WAIKMKAFLRGVNLWNAVE  87
           WA+KM+A+L  +++W A+E
Sbjct  23  WAVKMEAYLEALDVWEAIE  41


>gi|92883546|gb|ABE86984.1|  Peptidase S8 and S53, subtilisin, kexin, sedolisin; Integrase, 
catalytic region; Zinc finger, CCHC-type; Peptidase aspartic, 
catalytic [Medicago truncatula]
Length=1346

 Score = 45.4 bits (106),  Expect(2) = 1e-10
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 0/82 (0%)
 Frame = +2

Query  110  LKENATQAQVKQYVEDIAKRYRALSFKHSTVSESVFNRIMGCETANEALSKLEKEFLGSA  289
            L  NAT+ Q   + E   K  +AL     ++ E  F RI    ++ EA   L K   G  
Sbjct  46   LAANATEVQRNAHKELKKKDCKALFLIQQSLDEGNFERISKSLSSKEAWDILSKYHEGDD  105

Query  290  RSKQVRLQNLKRKYELLRMKEN  355
            + K ++LQ+L+RK+EL++M+++
Sbjct  106  KVKLIKLQSLRRKFELMQMEDD  127


 Score = 39.7 bits (91),  Expect(2) = 1e-10
 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 0/57 (0%)
 Frame = +3

Query  363  IXEFVEDLMKLVNQIRLMGDSLIDLKVVEKIMLSLPERVDPTITYLEPGXXITELSI  533
            I E++  L+ LVNQ++   +++ D ++VEKIM +L  R D  +  ++    +  L I
Sbjct  130  ISEYISKLINLVNQMKACSEAITDQQIVEKIMRTLSSRFDFIVVAIQESKDVKTLKI  186


>gi|92875114|gb|ABE83254.1|  Peptidase S8 and S53, subtilisin, kexin, sedolisin; Integrase, 
catalytic region; Zinc finger, CCHC-type; Peptidase aspartic, 
catalytic [Medicago truncatula]
Length=1346

 Score = 45.4 bits (106),  Expect(2) = 1e-10
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 0/82 (0%)
 Frame = +2

Query  110  LKENATQAQVKQYVEDIAKRYRALSFKHSTVSESVFNRIMGCETANEALSKLEKEFLGSA  289
            L  NAT+ Q   + E   K  +AL     ++ E  F RI    ++ EA   L K   G  
Sbjct  46   LAANATEVQRNAHKELKKKDCKALFLIQQSLDEGNFERISKSLSSKEAWDILSKYHEGDD  105

Query  290  RSKQVRLQNLKRKYELLRMKEN  355
            + K ++LQ+L+RK+EL++M+++
Sbjct  106  KVKLIKLQSLRRKFELMQMEDD  127


 Score = 39.7 bits (91),  Expect(2) = 1e-10
 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 0/57 (0%)
 Frame = +3

Query  363  IXEFVEDLMKLVNQIRLMGDSLIDLKVVEKIMLSLPERVDPTITYLEPGXXITELSI  533
            I E++  L+ LVNQ++   +++ D ++VEKIM +L  R D  +  ++    +  L I
Sbjct  130  ISEYISKLINLVNQMKACSEAITDQQIVEKIMRTLSSRFDFIVVAIQESKDVKTLKI  186


>gi|87240920|gb|ABD32778.1|  Peptidase S8 and S53, subtilisin, kexin, sedolisin; Integrase, 
catalytic region; Zinc finger, CCHC-type; Peptidase aspartic, 
catalytic [Medicago truncatula]
Length=1346

 Score = 45.4 bits (106),  Expect(2) = 1e-10
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 0/82 (0%)
 Frame = +2

Query  110  LKENATQAQVKQYVEDIAKRYRALSFKHSTVSESVFNRIMGCETANEALSKLEKEFLGSA  289
            L  NAT+ Q   + E   K  +AL     ++ E  F RI    ++ EA   L K   G  
Sbjct  46   LAANATEVQRNAHKELKKKDCKALFLIQQSLDEGNFERISKSLSSKEAWDILSKYHEGDD  105

Query  290  RSKQVRLQNLKRKYELLRMKEN  355
            + K ++LQ+L+RK+EL++M+++
Sbjct  106  KVKLIKLQSLRRKFELMQMEDD  127


 Score = 39.7 bits (91),  Expect(2) = 1e-10
 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 0/57 (0%)
 Frame = +3

Query  363  IXEFVEDLMKLVNQIRLMGDSLIDLKVVEKIMLSLPERVDPTITYLEPGXXITELSI  533
            I E++  L+ LVNQ++   +++ D ++VEKIM +L  R D  +  ++    +  L I
Sbjct  130  ISEYISKLINLVNQMKACSEAITDQQIVEKIMRTLSSRFDFIVVAIQESKDVKTLKI  186


>gi|92874068|gb|ABE82386.1|  Peptidase S8 and S53, subtilisin, kexin, sedolisin; Integrase, 
catalytic region; Zinc finger, CCHC-type; Peptidase aspartic, 
catalytic [Medicago truncatula]
 gi|92893604|gb|ABE91830.1|  Peptidase S8 and S53, subtilisin, kexin, sedolisin; Integrase, 
catalytic region; Zinc finger, CCHC-type; Peptidase aspartic, 
catalytic [Medicago truncatula]
Length=1346

 Score = 45.4 bits (106),  Expect(2) = 4e-10
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 0/82 (0%)
 Frame = +2

Query  110  LKENATQAQVKQYVEDIAKRYRALSFKHSTVSESVFNRIMGCETANEALSKLEKEFLGSA  289
            L  NAT+ Q   + E   K  +AL     ++ E  F RI    ++ EA   L K   G  
Sbjct  46   LAANATEVQRNAHKELKKKDCKALFLIQQSLDEGNFERISKSLSSKEAWDILSKYHEGDD  105

Query  290  RSKQVRLQNLKRKYELLRMKEN  355
            + K ++LQ+L+RK+EL++M+++
Sbjct  106  KVKLIKLQSLRRKFELMQMEDD  127


 Score = 38.1 bits (87),  Expect(2) = 4e-10
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 0/57 (0%)
 Frame = +3

Query  363  IXEFVEDLMKLVNQIRLMGDSLIDLKVVEKIMLSLPERVDPTITYLEPGXXITELSI  533
            I E++  L+ LVNQ++   +++ D ++VEKIM +L  R D  +   +    +  L I
Sbjct  130  ISEYISKLINLVNQMKACSEAITDQQIVEKIMRTLSSRFDFIVMATQESKDVKTLKI  186


>gi|9757691|dbj|BAB08210.1|  unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length=305

 Score = 40.4 bits (93),  Expect(3) = 9e-10
 Identities = 17/58 (29%), Positives = 37/58 (63%), Gaps = 0/58 (0%)
 Frame = +3

Query  363  IXEFVEDLMKLVNQIRLMGDSLIDLKVVEKIMLSLPERVDPTITYLEPGXXITELSIS  536
            I +F   +  +VN+IR +G  + +  VVEK++ S+P++  P I+ +E    ++E++++
Sbjct  137  INDFALKVTTIVNEIRSLGTKVEETTVVEKLLHSVPDKFQPLISTIEQWGDVSEMTVT  194


 Score = 33.1 bits (74),  Expect(3) = 9e-10
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 0/60 (0%)
 Frame = +2

Query  176  ALSFKHSTVSESVFNRIMGCETANEALSKLEKEFLGSARSKQVRLQNLKRKYELLRMKEN  355
            AL+     V E+V   I   ETA EA   L++  +G  R K+ R+Q LKR+ + + M  +
Sbjct  75   ALAAIVQAVPEAVVMAISEKETAKEAWDALKQMNMGEERVKKARVQTLKRELDGMYMSNS  134


 Score = 28.1 bits (61),  Expect(3) = 9e-10
 Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 0/19 (0%)
 Frame = +1

Query  31  WAIKMKAFLRGVNLWNAVE  87
           WA+KMK F+    +W AVE
Sbjct  45  WAVKMKIFMHAQGVWAAVE  63


>gi|92888709|gb|ABE89518.1|  Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase 
aspartic, catalytic [Medicago truncatula]
Length=837

 Score = 57.4 bits (137),  Expect = 3e-08
 Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 5/123 (4%)
 Frame = +2

Query  59   EVLTSGMLLSSETELLVLKENATQAQVKQYVEDIAKRYR---ALSFKHSTVSESVFNRIM  229
            E + +G    + TE  + KE A ++  +   E++ K+      L      VS S+F RI 
Sbjct  42   EYVKNGYEEPTPTEAEISKEKAEESSKQP--EELKKKITDAGVLGMIQRGVSLSIFLRIR  99

Query  230  GCETANEALSKLEKEFLGSARSKQVRLQNLKRKYELLRMKENHDNXRVC*RSDETCKSDQ  409
              +T+ EA S L++EF G ++ + V+LQ+LKR YE  RMKEN +      R  E     +
Sbjct  100  RAKTSKEAWSILQQEFEGDSKVRTVKLQSLKRDYENERMKENENLNEYFNRLSELVNQMK  159

Query  410  THG  418
            +HG
Sbjct  160  SHG  162


 Score = 44.3 bits (103),  Expect = 3e-04
 Identities = 20/57 (35%), Positives = 37/57 (64%), Gaps = 0/57 (0%)
 Frame = +3

Query  363  IXEFVEDLMKLVNQIRLMGDSLIDLKVVEKIMLSLPERVDPTITYLEPGXXITELSI  533
            + E+   L +LVNQ++  GD++ D ++V+KI++SL  R DP +  +E    ++ L+I
Sbjct  144  LNEYFNRLSELVNQMKSHGDTIEDRRIVDKILISLTARFDPMVGVIEETKDLSTLTI  200


>gi|38194925|gb|AAR13313.1|  gag-pol polyprotein [Phaseolus vulgaris]
Length=529

 Score = 55.8 bits (133),  Expect = 9e-08
 Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 0/99 (0%)
 Frame = +2

Query  59   EVLTSGMLLSSETELLVLKENATQAQVKQYVEDIAKRYRALSFKHSTVSESVFNRIMGCE  238
            E L     +  + E+  L EN T AQ+K   +   KR +A +   + VS  VF RIM  +
Sbjct  23   EALDLWEAVEEDYEIQSLPENPTVAQIKSQKDKKMKRSKAKACLFAAVSPMVFTRIMSLK  82

Query  239  TANEALSKLEKEFLGSARSKQVRLQNLKRKYELLRMKEN  355
            +A E    L+ E+ G  R + ++  NL R++EL +MKE+
Sbjct  83   SAKEIWDYLKAEYEGDERIRGMQALNLIREFELQKMKES  121


 Score = 29.3 bits (64),  Expect = 9.0
 Identities = 10/21 (47%), Positives = 16/21 (76%), Gaps = 0/21 (0%)
 Frame = +1

Query  25  Q*WAIKMKAFLRGVNLWNAVE  87
           Q WA++M+ +L  ++LW AVE
Sbjct  12  QMWAVRMETYLEALDLWEAVE  32


>gi|4335731|gb|AAD17409.1|  putative retroelement pol polyprotein [Arabidopsis thaliana]
Length=1347

 Score = 48.1 bits (113),  Expect(2) = 9e-07
 Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
 Frame = +2

Query  152  EDIAKRYRALSFKHSTVSESVFNRIMGCETANEALSKLEKEFLGSARSKQVRLQNLKRKY  331
            E +     AL    + V++ +F+RI    ++ EA   L+ E+ GS + + V+LQ+L+R+Y
Sbjct  63   EAVTNDTMALQILQTAVTDQIFSRIAAASSSKEAWDVLKDEYQGSPQVRLVKLQSLRREY  122

Query  332  ELLRMKENHDNXR  370
            E L+M +N DN +
Sbjct  123  ENLKMYDN-DNIK  134


 Score = 23.9 bits (50),  Expect(2) = 9e-07
 Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 0/19 (0%)
 Frame = +1

Query  31  WAIKMKAFLRGVNLWNAVE  87
           W+IKM    R   LW+ VE
Sbjct  20  WSIKMATIFRTRKLWSVVE  38


>gi|92887154|gb|ABE88672.1|  lectin receptor kinase-related [Medicago truncatula]
Length=118

 Score = 50.8 bits (120),  Expect = 3e-06
 Identities = 30/85 (35%), Positives = 52/85 (61%), Gaps = 5/85 (5%)
 Frame = +2

Query  113  KENATQAQVKQYVEDI----AKRYRALSFKHSTVSESVFNRIMGCETANEAL-SKLEKEF  277
            +E++ + ++K  V ++     K  +A+ F H +VS  +F +I+  E+A E     LEK +
Sbjct  13   EEHSGRKELKHVVVNLWDAKKKDGKAMFFMHQSVSNEIFEKIVHYESAKEETWEALEKLY  72

Query  278  LGSARSKQVRLQNLKRKYELLRMKE  352
             G  + K+VRLQ L+R+YE+L M+E
Sbjct  73   SGDGKLKKVRLQVLRRQYEVLTMEE  97


>gi|6850900|emb|CAB71063.1|  copia-type polyprotein [Arabidopsis thaliana]
Length=1352

 Score = 45.1 bits (105),  Expect(2) = 7e-06
 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
 Frame = +2

Query  116  ENATQAQVKQYVEDIAKR-YRALSFKHSTVSESVFNRIMGCETANEALSKLEKEFLGSAR  292
            E +     K  + D  KR  +AL   +  + E  F +++   +A EA  KL   + G+ +
Sbjct  48   EGSLSQTQKDGLRDSRKRDKKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQ  107

Query  293  SKQVRLQNLKRKYELLRMKE  352
             K+VRLQ L+ ++E L+MKE
Sbjct  108  VKKVRLQTLRGEFEALQMKE  127


 Score = 23.9 bits (50),  Expect(2) = 7e-06
 Identities = 8/19 (42%), Positives = 13/19 (68%), Gaps = 0/19 (0%)
 Frame = +1

Query  31  WAIKMKAFLRGVNLWNAVE  87
           W+++MKA L   ++W  VE
Sbjct  21  WSLRMKAILGAHDVWEIVE  39


>gi|5734736|gb|AAD50001.1|AC007259_14  Hypothetical protein [Arabidopsis thaliana]
Length=1352

 Score = 45.1 bits (105),  Expect(2) = 7e-06
 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
 Frame = +2

Query  116  ENATQAQVKQYVEDIAKR-YRALSFKHSTVSESVFNRIMGCETANEALSKLEKEFLGSAR  292
            E +     K  + D  KR  +AL   +  + E  F +++   +A EA  KL   + G+ +
Sbjct  48   EGSLSQTQKDGLRDSRKRDKKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQ  107

Query  293  SKQVRLQNLKRKYELLRMKE  352
             K+VRLQ L+ ++E L+MKE
Sbjct  108  VKKVRLQTLRGEFEALQMKE  127


 Score = 23.9 bits (50),  Expect(2) = 7e-06
 Identities = 8/19 (42%), Positives = 13/19 (68%), Gaps = 0/19 (0%)
 Frame = +1

Query  31  WAIKMKAFLRGVNLWNAVE  87
           W+++MKA L   ++W  VE
Sbjct  21  WSLRMKAILGAHDVWEIVE  39


>gi|12597806|gb|AAG60117.1|AC073555_1  copia-type polyprotein, putative [Arabidopsis thaliana]
Length=1352

 Score = 45.1 bits (105),  Expect(2) = 7e-06
 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
 Frame = +2

Query  116  ENATQAQVKQYVEDIAKR-YRALSFKHSTVSESVFNRIMGCETANEALSKLEKEFLGSAR  292
            E +     K  + D  KR  +AL   +  + E  F +++   +A EA  KL   + G+ +
Sbjct  48   EGSLSQTQKDGLRDSRKRDKKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQ  107

Query  293  SKQVRLQNLKRKYELLRMKE  352
             K+VRLQ L+ ++E L+MKE
Sbjct  108  VKKVRLQTLRGEFEALQMKE  127


 Score = 23.9 bits (50),  Expect(2) = 7e-06
 Identities = 8/19 (42%), Positives = 13/19 (68%), Gaps = 0/19 (0%)
 Frame = +1

Query  31  WAIKMKAFLRGVNLWNAVE  87
           W+++MKA L   ++W  VE
Sbjct  21  WSLRMKAILGAHDVWEIVE  39


>gi|12321254|gb|AAG50698.1|AC079604_5  copia-type polyprotein, putative [Arabidopsis thaliana]
 gi|12321387|gb|AAG50765.1|AC079131_10  copia-type polyprotein, putative [Arabidopsis thaliana]
Length=1320

 Score = 45.1 bits (105),  Expect(2) = 7e-06
 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
 Frame = +2

Query  116  ENATQAQVKQYVEDIAKR-YRALSFKHSTVSESVFNRIMGCETANEALSKLEKEFLGSAR  292
            E +     K  + D  KR  +AL   +  + E  F +++   +A EA  KL   + G+ +
Sbjct  48   EGSLSQTQKDGLRDSRKRDKKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQ  107

Query  293  SKQVRLQNLKRKYELLRMKE  352
             K+VRLQ L+ ++E L+MKE
Sbjct  108  VKKVRLQTLRGEFEALQMKE  127


 Score = 23.9 bits (50),  Expect(2) = 7e-06
 Identities = 8/19 (42%), Positives = 13/19 (68%), Gaps = 0/19 (0%)
 Frame = +1

Query  31  WAIKMKAFLRGVNLWNAVE  87
           W+++MKA L   ++W  VE
Sbjct  21  WSLRMKAILGAHDVWEIVE  39


>gi|6996308|emb|CAB75469.1|  copia-type reverse transcriptase-like protein [Arabidopsis thaliana]
Length=1272

 Score = 45.1 bits (105),  Expect(2) = 7e-06
 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
 Frame = +2

Query  116  ENATQAQVKQYVEDIAKR-YRALSFKHSTVSESVFNRIMGCETANEALSKLEKEFLGSAR  292
            E +     K  + D  KR  +AL   +  + E  F +++   +A EA  KL   + G+ +
Sbjct  48   EGSLSQTQKDGLRDSRKRDKKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQ  107

Query  293  SKQVRLQNLKRKYELLRMKE  352
             K+VRLQ L+ ++E L+MKE
Sbjct  108  VKKVRLQTLRGEFEALQMKE  127


 Score = 23.9 bits (50),  Expect(2) = 7e-06
 Identities = 8/19 (42%), Positives = 13/19 (68%), Gaps = 0/19 (0%)
 Frame = +1

Query  31  WAIKMKAFLRGVNLWNAVE  87
           W+++MKA L   ++W  VE
Sbjct  21  WSLRMKAILGAHDVWEIVE  39


>gi|1769897|emb|CAA69271.1|  lectin receptor kinase [Arabidopsis thaliana]
Length=544

 Score = 45.1 bits (105),  Expect(2) = 8e-06
 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
 Frame = +2

Query  116  ENATQAQVKQYVEDIAKR-YRALSFKHSTVSESVFNRIMGCETANEALSKLEKEFLGSAR  292
            E +     K  + D  KR  +AL   +  + E  F +++   +A EA  KL   + G+ +
Sbjct  64   EGSLSQTQKDGLRDSRKRDKKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQ  123

Query  293  SKQVRLQNLKRKYELLRMKE  352
             K+VRLQ L+ ++E L+MKE
Sbjct  124  VKKVRLQTLRGEFEALQMKE  143


 Score = 23.9 bits (50),  Expect(2) = 8e-06
 Identities = 8/19 (42%), Positives = 13/19 (68%), Gaps = 0/19 (0%)
 Frame = +1

Query  31  WAIKMKAFLRGVNLWNAVE  87
           W+++MKA L   ++W  VE
Sbjct  37  WSLRMKAILGAHDVWEIVE  55


>gi|92867602|gb|ABE77821.1|  Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase 
aspartic, catalytic [Medicago truncatula]
Length=1268

 Score = 48.9 bits (115),  Expect = 1e-05
 Identities = 20/63 (31%), Positives = 43/63 (68%), Gaps = 0/63 (0%)
 Frame = +3

Query  348  KRIMTIXEFVEDLMKLVNQIRLMGDSLIDLKVVEKIMLSLPERVDPTITYLEPGXXITEL  527
            K   TI ++ + L+ + N++RL+G    D ++VEKI++++PER + +IT LE    ++++
Sbjct  128  KESETIKDYSDRLLSIANKVRLLGTQFADSRIVEKILVTVPERYEASITTLENTKDLSKI  187

Query  528  SIS  536
            +++
Sbjct  188  TLA  190


>gi|77554492|gb|ABA97288.1|  retrotransposon protein, putative, Ty1-copia subclass, expressed 
[Oryza sativa (japonica cultivar-group)]
Length=904

 Score = 41.6 bits (96),  Expect(2) = 1e-05
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 0/66 (0%)
 Frame = +2

Query  155  DIAKRYRALSFKHSTVSESVFNRIMGCETANEALSKLEKEFLGSARSKQVRLQNLKRKYE  334
            DI K  +A +     V E V  +I   +TA E    L+  FLG  R K+ R+Q LK  ++
Sbjct  480  DIKKDKQARACLFGAVPEDVLQQIAKKKTAKEVWESLKTRFLGVERVKKARVQTLKSDFK  539

Query  335  LLRMKE  352
             L MK+
Sbjct  540  ALHMKD  545


 Score = 26.6 bits (57),  Expect(2) = 1e-05
 Identities = 9/19 (47%), Positives = 14/19 (73%), Gaps = 0/19 (0%)
 Frame = +1

Query  31   WAIKMKAFLRGVNLWNAVE  87
            WAIKM+A +    +W+A+E
Sbjct  454  WAIKMEANMEAQGIWDAIE  472


>gi|92892601|gb|ABE91319.1|  Zinc knuckle, putative [Medicago truncatula]
Length=473

 Score = 35.0 bits (79),  Expect(2) = 1e-05
 Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 0/38 (0%)
 Frame = +2

Query  242  ANEALSKLEKEFLGSARSKQVRLQNLKRKYELLRMKEN  355
            + EA   LE    G  + KQV+LQ+ +RKYE+++M+E+
Sbjct  71   SKEAWDILENYHNGGEKVKQVKLQSYRRKYEMMQMEED  108


 Score = 33.1 bits (74),  Expect(2) = 1e-05
 Identities = 11/57 (19%), Positives = 33/57 (57%), Gaps = 0/57 (0%)
 Frame = +3

Query  363  IXEFVEDLMKLVNQIRLMGDSLIDLKVVEKIMLSLPERVDPTITYLEPGXXITELSI  533
            + ++   ++K+VN ++  G+++ D  +VEK++ SL ++ D  +  ++    +  + +
Sbjct  111  VSDYFSKMIKIVNLLKNCGENISDQMIVEKVLRSLSQKFDFIVVAIQEAKDVKTMKV  167


>gi|115441419|ref|NP_001044989.1|  Os01g0879800 [Oryza sativa (japonica cultivar-group)]
 gi|113534520|dbj|BAF06903.1|  Os01g0879800 [Oryza sativa (japonica cultivar-group)]
Length=278

 Score = 41.6 bits (96),  Expect(2) = 1e-05
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 0/66 (0%)
 Frame = +2

Query  155  DIAKRYRALSFKHSTVSESVFNRIMGCETANEALSKLEKEFLGSARSKQVRLQNLKRKYE  334
            DI K  +A +     V E V  +I   +TA E    L+  FLG  R K+ R+Q LK  ++
Sbjct  67   DIKKDKQARACLFGAVPEDVLQQIAKKKTAKEVWESLKTRFLGVERVKKARVQTLKSDFK  126

Query  335  LLRMKE  352
             L MK+
Sbjct  127  ALHMKD  132


 Score = 26.6 bits (57),  Expect(2) = 1e-05
 Identities = 9/19 (47%), Positives = 14/19 (73%), Gaps = 0/19 (0%)
 Frame = +1

Query  31  WAIKMKAFLRGVNLWNAVE  87
           WAIKM+A +    +W+A+E
Sbjct  41  WAIKMEANMEAQGIWDAIE  59


>gi|92898892|gb|ABE94411.1|  Integrase, catalytic region; Zinc finger, CCHC-type [Medicago 
truncatula]
Length=1110

 Score = 48.1 bits (113),  Expect = 2e-05
 Identities = 20/63 (31%), Positives = 43/63 (68%), Gaps = 0/63 (0%)
 Frame = +3

Query  348  KRIMTIXEFVEDLMKLVNQIRLMGDSLIDLKVVEKIMLSLPERVDPTITYLEPGXXITEL  527
            K   TI ++ + L+ + N++RL+G    D ++VEKI++++PER + +IT LE    ++++
Sbjct  128  KESETIKDYSDRLLSIANKVRLLGTQFADSRIVEKILVTVPERYEASITTLENIKDLSKI  187

Query  528  SIS  536
            +++
Sbjct  188  TLA  190


>gi|6552735|gb|AAF16534.1|AC013482_8  T26F17.17 [Arabidopsis thaliana]
Length=1291

 Score = 43.9 bits (102),  Expect(2) = 2e-05
 Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
 Frame = +2

Query  116  ENATQAQVKQYVEDIAKR-YRALSFKHSTVSESVFNRIMGCETANEALSKLEKEFLGSAR  292
            E +     K  + D  KR  +AL   +  + E  F +++   +A EA  KL   + G  +
Sbjct  48   EGSLSQTQKDGLRDSRKRDKKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGVDQ  107

Query  293  SKQVRLQNLKRKYELLRMKE  352
             K+VRLQ L+ ++E L+MKE
Sbjct  108  VKKVRLQTLRGEFEALQMKE  127


 Score = 23.5 bits (49),  Expect(2) = 2e-05
 Identities = 8/19 (42%), Positives = 13/19 (68%), Gaps = 0/19 (0%)
 Frame = +1

Query  31  WAIKMKAFLRGVNLWNAVE  87
           W+++MKA L   ++W  VE
Sbjct  21  WSLQMKAILGAHDVWEIVE  39


>gi|92885625|gb|ABE87852.1|  hypothetical protein MtrDRAFT_AC145061g30v2 [Medicago truncatula]
Length=280

 Score = 35.8 bits (81),  Expect(2) = 2e-05
 Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 0/57 (0%)
 Frame = +3

Query  363  IXEFVEDLMKLVNQIRLMGDSLIDLKVVEKIMLSLPERVDPTITYLEPGXXITELSI  533
            I +++  L+ +VNQ+++   ++ D K+VEKIM++L  R    +  ++    +  L I
Sbjct  107  IVDYISMLINVVNQMKVCSGTISDKKIVEKIMITLSSRSAFIVVAIQESTDVNTLKI  163


 Score = 31.6 bits (70),  Expect(2) = 2e-05
 Identities = 12/24 (50%), Positives = 21/24 (87%), Gaps = 0/24 (0%)
 Frame = +2

Query  281  GSARSKQVRLQNLKRKYELLRMKE  352
            G A+ KQ++LQ L+RK+EL++M++
Sbjct  80   GDAKVKQIKLQLLRRKFELMQMED  103


>gi|109676362|gb|ABG37663.1|  CCHC-type integrase [Populus trichocarpa]
Length=2037

 Score = 47.8 bits (112),  Expect = 2e-05
 Identities = 22/59 (37%), Positives = 40/59 (67%), Gaps = 0/59 (0%)
 Frame = +3

Query  360   TIXEFVEDLMKLVNQIRLMGDSLIDLKVVEKIMLSLPERVDPTITYLEPGXXITELSIS  536
             ++ ++   LM +VNQ+RL+G +  D KVVEKIM+S+P++ +  I+ +E    +  L+I+
Sbjct  944   SVKDYSGRLMDVVNQMRLLGKAFTDHKVVEKIMVSVPQKFEAKISAIEESCDMNNLTIA  1002


>gi|92870509|gb|ABE79802.1|  Zinc finger, CCHC-type [Medicago truncatula]
Length=482

 Score = 34.7 bits (78),  Expect(2) = 4e-05
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 0/72 (0%)
 Frame = +2

Query  140  KQYVEDIAKRYRALSFKHSTVSESVFNRIMGCETANEALSKLEKEFLGSARSKQVRLQNL  319
            K+  E +    +A  F    +S   ++RI  C TA E    L+    G++  K+ R+   
Sbjct  74   KEENEQVLLNSKAQLFLTCALSREEYDRIEECTTAKEIWEALKTHHEGTSHVKEERIDMG  133

Query  320  KRKYELLRMKEN  355
             +K+E   MKE+
Sbjct  134  VKKFETFEMKED  145


 Score = 32.0 bits (71),  Expect(2) = 4e-05
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 0/64 (0%)
 Frame = +3

Query  342  E*KRIMTIXEFVEDLMKLVNQIRLMGDSLIDLKVVEKIMLSLPERVDPTITYLEPGXXIT  521
            E K   TI E    L  +VN++R +G      + V KI+ SLP+   P +T +     + 
Sbjct  141  EMKEDETIDEMFARLTIIVNELRSLGKKYTTHERVRKILRSLPKVWRPMVTAITQAKNLK  200

Query  522  ELSI  533
            EL +
Sbjct  201  ELEL  204


>gi|12584302|gb|AAG52949.1|  gag/pol polyprotein [Arabidopsis thaliana]
Length=1643

 Score = 47.0 bits (110),  Expect = 4e-05
 Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 0/63 (0%)
 Frame = +2

Query  173  RALSFKHSTVSESVFNRIMGCETANEALSKLEKEFLGSARSKQVRLQNLKRKYELLRMKE  352
            RALS   ++V+++ F RI  CE+A EA  KL K + G++  K+ R+  L  ++E L M E
Sbjct  80   RALSLIFNSVNQNQFKRIQNCESAKEAWDKLAKAYEGTSSVKRSRIDMLASQFENLTMDE  139

Query  353  NHD  361
            + +
Sbjct  140  SEN  142


>gi|10177949|dbj|BAB11308.1|  copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length=1013

 Score = 47.0 bits (110),  Expect = 4e-05
 Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 0/63 (0%)
 Frame = +2

Query  173  RALSFKHSTVSESVFNRIMGCETANEALSKLEKEFLGSARSKQVRLQNLKRKYELLRMKE  352
            RALS   ++V+++ F RI  CE+A EA  KL K + G++  K+ R+  L  ++E L M E
Sbjct  80   RALSLIFNSVNQNQFKRIQNCESAKEAWDKLAKAYEGTSSVKRSRIDMLASQFENLTMDE  139

Query  353  NHD  361
            + +
Sbjct  140  SEN  142


>gi|116309492|emb|CAH66560.1|  OSIGBa0113K06.6 [Oryza sativa (indica cultivar-group)]
Length=1539

 Score = 35.4 bits (80),  Expect(2) = 4e-05
 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 0/58 (0%)
 Frame = +2

Query  173  RALSFKHSTVSESVFNRIMGCETANEALSKLEKEFLGSARSKQVRLQNLKRKYELLRM  346
            +A++   +++S+  F+R+   ETA E  +KL K   G++  K  +L  LK +YE   M
Sbjct  65   QAMNALFNSLSQEEFDRVSNLETAYEIWNKLAKIHEGTSEYKDAKLHFLKIQYETFSM  122


 Score = 30.8 bits (68),  Expect(2) = 4e-05
 Identities = 12/36 (33%), Positives = 25/36 (69%), Gaps = 0/36 (0%)
 Frame = +3

Query  393  LVNQIRLMGDSLIDLKVVEKIMLSLPERVDPTITYL  500
            +VN ++ +G +  DL+V +K++ +LPE+ +  +T L
Sbjct  138  IVNDLKGLGANYTDLEVAKKMLRALPEKYETLVTML  173


>gi|38346561|emb|CAE03782.2|  OSJNBa0063G07.6 [Oryza sativa (japonica cultivar-group)]
Length=1539

 Score = 35.4 bits (80),  Expect(2) = 4e-05
 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 0/58 (0%)
 Frame = +2

Query  173  RALSFKHSTVSESVFNRIMGCETANEALSKLEKEFLGSARSKQVRLQNLKRKYELLRM  346
            +A++   +++S+  F+R+   ETA E  +KL K   G++  K  +L  LK +YE   M
Sbjct  65   QAMNALFNSLSQEEFDRVSNLETAYEIWNKLAKIHEGTSEYKDAKLHFLKIQYETFSM  122


 Score = 30.8 bits (68),  Expect(2) = 4e-05
 Identities = 12/36 (33%), Positives = 25/36 (69%), Gaps = 0/36 (0%)
 Frame = +3

Query  393  LVNQIRLMGDSLIDLKVVEKIMLSLPERVDPTITYL  500
            +VN ++ +G +  DL+V +K++ +LPE+ +  +T L
Sbjct  138  IVNDLKGLGANYTDLEVAKKMLRALPEKYETLVTML  173


>gi|108710088|gb|ABF97883.1|  retrotransposon protein, putative, unclassified [Oryza sativa 
(japonica cultivar-group)]
Length=1441

 Score = 34.7 bits (78),  Expect(2) = 6e-05
 Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 0/58 (0%)
 Frame = +2

Query  173  RALSFKHSTVSESVFNRIMGCETANEALSKLEKEFLGSARSKQVRLQNLKRKYELLRM  346
            +A++   +++S+  F+R+   ETA E  +KL +   G+++ K  +L  LK +YE   M
Sbjct  65   QAMNALFNSLSQEEFDRVSNLETAYEIWNKLAEIHEGTSKYKDAKLHFLKIQYETFSM  122


 Score = 31.2 bits (69),  Expect(2) = 6e-05
 Identities = 12/36 (33%), Positives = 25/36 (69%), Gaps = 0/36 (0%)
 Frame = +3

Query  393  LVNQIRLMGDSLIDLKVVEKIMLSLPERVDPTITYL  500
            +VN ++ +G +  DL+V +K++ +LPE+ +  +T L
Sbjct  138  IVNDLKGLGANYTDLEVAQKMLRALPEKYETLVTML  173


>gi|108708079|gb|ABF95874.1|  hypothetical protein LOC_Os03g22290 [Oryza sativa (japonica cultivar-group)]
Length=255

 Score = 33.1 bits (74),  Expect(2) = 6e-05
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 0/58 (0%)
 Frame = +2

Query  173  RALSFKHSTVSESVFNRIMGCETANEALSKLEKEFLGSARSKQVRLQNLKRKYELLRM  346
            +A++   +++S+  F+R+   ETA E  +KL +   G++  K  +L  LK +YE   M
Sbjct  65   QAMNALFNSLSQEEFDRVSNLETAYEIWNKLAEINEGASEYKDAKLHFLKIQYETFSM  122


 Score = 32.7 bits (73),  Expect(2) = 6e-05
 Identities = 12/36 (33%), Positives = 26/36 (72%), Gaps = 0/36 (0%)
 Frame = +3

Query  393  LVNQIRLMGDSLIDLKVVEKIMLSLPERVDPTITYL  500
            +VN ++ +G +  DL+V +K++++LPE+ +  +T L
Sbjct  138  IVNDLKGLGANYTDLEVAQKMLMALPEKYETLVTML  173


>gi|4773881|gb|AAD29754.1|AF076243_1  putative transposon protein [Arabidopsis thaliana]
 gi|7267199|emb|CAB77910.1|  putative transposon protein [Arabidopsis thaliana]
Length=1008

 Score = 46.2 bits (108),  Expect = 7e-05
 Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 0/63 (0%)
 Frame = +2

Query  173  RALSFKHSTVSESVFNRIMGCETANEALSKLEKEFLGSARSKQVRLQNLKRKYELLRMKE  352
            RALS   + V+++ F RI  CE+A EA  KL K + G++  K+ R+  L  ++E L M+E
Sbjct  80   RALSLIFNFVNQNQFKRIQNCESAKEAWDKLAKAYEGTSSVKRSRIDMLASQFENLSMEE  139

Query  353  NHD  361
              +
Sbjct  140  TEN  142


>gi|4006828|gb|AAC95170.1|  copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length=916

 Score = 45.8 bits (107),  Expect = 9e-05
 Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 0/63 (0%)
 Frame = +2

Query  173  RALSFKHSTVSESVFNRIMGCETANEALSKLEKEFLGSARSKQVRLQNLKRKYELLRMKE  352
            RALS   ++V+++ F +I  CE+A EA  KL K + G++  K+ R+  L  ++E L M+E
Sbjct  92   RALSLIFNSVNQNQFKQIQNCESAKEAWDKLAKAYEGTSSVKRSRIDMLASQFENLTMEE  151

Query  353  NHD  361
              +
Sbjct  152  TEN  154


>gi|54287533|gb|AAV31277.1|  putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length=1577

 Score = 33.9 bits (76),  Expect(2) = 1e-04
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 0/58 (0%)
 Frame = +2

Query  173  RALSFKHSTVSESVFNRIMGCETANEALSKLEKEFLGSARSKQVRLQNLKRKYELLRM  346
            +A++   +++S+  F+R+   ETA E  +KL +   G++  K  +L  LK +YE   M
Sbjct  65   QAMNALFNSLSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAKLHFLKIQYETFSM  122


 Score = 31.2 bits (69),  Expect(2) = 1e-04
 Identities = 12/36 (33%), Positives = 25/36 (69%), Gaps = 0/36 (0%)
 Frame = +3

Query  393  LVNQIRLMGDSLIDLKVVEKIMLSLPERVDPTITYL  500
            +VN ++ +G +  DL+V +K++ +LPE+ +  +T L
Sbjct  138  IVNDLKGLGANYTDLEVAQKMLRALPEKYETLVTML  173


>gi|110289188|gb|ABG66113.1|  retrotransposon protein, putative, Ty1-copia subclass [Oryza 
sativa (japonica cultivar-group)]
Length=2112

 Score = 33.5 bits (75),  Expect(2) = 1e-04
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 0/58 (0%)
 Frame = +2

Query  173  RALSFKHSTVSESVFNRIMGCETANEALSKLEKEFLGSARSKQVRLQNLKRKYELLRM  346
            +A++   +++S+  F+R+   ETA E  +KL +   G++  K  +L  LK +YE   M
Sbjct  65   QAMNALFNSLSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAKLHFLKIQYETFYM  122


 Score = 31.2 bits (69),  Expect(2) = 1e-04
 Identities = 12/36 (33%), Positives = 25/36 (69%), Gaps = 0/36 (0%)
 Frame = +3

Query  393  LVNQIRLMGDSLIDLKVVEKIMLSLPERVDPTITYL  500
            +VN ++ +G +  DL+V +K++ +LPE+ +  +T L
Sbjct  138  IVNDLKGLGANYTDLEVAQKMLRALPEKYETLVTML  173


>gi|108710679|gb|ABF98474.1|  retrotransposon protein, putative, Ty1-copia subclass [Oryza 
sativa (japonica cultivar-group)]
Length=1753

 Score = 33.9 bits (76),  Expect(2) = 1e-04
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 0/58 (0%)
 Frame = +2

Query  173  RALSFKHSTVSESVFNRIMGCETANEALSKLEKEFLGSARSKQVRLQNLKRKYELLRM  346
            +A++   +++S+  F+R+   ETA E  +KL +   G++  K  +L  LK +YE   M
Sbjct  65   QAMNALFNSLSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAKLHFLKIQYETFSM  122


 Score = 30.8 bits (68),  Expect(2) = 1e-04
 Identities = 12/36 (33%), Positives = 25/36 (69%), Gaps = 0/36 (0%)
 Frame = +3

Query  393  LVNQIRLMGDSLIDLKVVEKIMLSLPERVDPTITYL  500
            +VN ++ +G +  DL+V +K++ +LPE+ +  +T L
Sbjct  138  IVNDLKGLGANYTDLEVAQKMLRALPEKYETFVTML  173


>gi|13937301|gb|AAK50132.1|AC087797_17  putative gag-pol polyprotein [Oryza sativa]
Length=1700

 Score = 33.9 bits (76),  Expect(2) = 1e-04
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 0/58 (0%)
 Frame = +2

Query  173  RALSFKHSTVSESVFNRIMGCETANEALSKLEKEFLGSARSKQVRLQNLKRKYELLRM  346
            +A++   +++S+  F+R+   ETA E  +KL +   G++  K  +L  LK +YE   M
Sbjct  65   QAMNALFNSLSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAKLHFLKIQYETFSM  122


 Score = 30.8 bits (68),  Expect(2) = 1e-04
 Identities = 12/36 (33%), Positives = 25/36 (69%), Gaps = 0/36 (0%)
 Frame = +3

Query  393  LVNQIRLMGDSLIDLKVVEKIMLSLPERVDPTITYL  500
            +VN ++ +G +  DL+V +K++ +LPE+ +  +T L
Sbjct  138  IVNDLKGLGANYTDLEVAQKMLRALPEKYETFVTML  173


>gi|22213212|gb|AAM94552.1|  putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length=1584

 Score = 33.5 bits (75),  Expect(2) = 1e-04
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 0/58 (0%)
 Frame = +2

Query  173  RALSFKHSTVSESVFNRIMGCETANEALSKLEKEFLGSARSKQVRLQNLKRKYELLRM  346
            +A++   +++S+  F+R+   ETA E  +KL +   G++  K  +L  LK +YE   M
Sbjct  65   QAMNALFNSLSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAKLHFLKIQYETFYM  122


 Score = 31.2 bits (69),  Expect(2) = 1e-04
 Identities = 12/36 (33%), Positives = 25/36 (69%), Gaps = 0/36 (0%)
 Frame = +3

Query  393  LVNQIRLMGDSLIDLKVVEKIMLSLPERVDPTITYL  500
            +VN ++ +G +  DL+V +K++ +LPE+ +  +T L
Sbjct  138  IVNDLKGLGANYTDLEVAQKMLRALPEKYETLVTML  173


>gi|22748369|gb|AAN05371.1|  Putative retroelement [Oryza sativa (japonica cultivar-group)]
 gi|31431391|gb|AAP53179.1|  retrotransposon protein, putative, Ty1-copia subclass [Oryza 
sativa (japonica cultivar-group)]
Length=1299

 Score = 33.9 bits (76),  Expect(2) = 1e-04
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 0/58 (0%)
 Frame = +2

Query  173  RALSFKHSTVSESVFNRIMGCETANEALSKLEKEFLGSARSKQVRLQNLKRKYELLRM  346
            +A++   +++S+  F+R+   ETA E  +KL +   G++  K  +L  LK +YE   M
Sbjct  31   QAMNALFNSLSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAKLHFLKIQYETFSM  88


 Score = 30.8 bits (68),  Expect(2) = 1e-04
 Identities = 11/36 (30%), Positives = 25/36 (69%), Gaps = 0/36 (0%)
 Frame = +3

Query  393  LVNQIRLMGDSLIDLKVVEKIMLSLPERVDPTITYL  500
            +VN ++ +G +  DL++ +K++ +LPE+ +  +T L
Sbjct  104  IVNDLKGLGANYTDLEIAQKMLRALPEKYETLVTML  139


>gi|15217314|gb|AAK92658.1|AC079634_19  Putative retroelement [Oryza sativa]
Length=1131

 Score = 33.9 bits (76),  Expect(2) = 1e-04
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 0/58 (0%)
 Frame = +2

Query  173  RALSFKHSTVSESVFNRIMGCETANEALSKLEKEFLGSARSKQVRLQNLKRKYELLRM  346
            +A++   +++S+  F+R+   ETA E  +KL +   G++  K  +L  LK +YE   M
Sbjct  85   QAMNALFNSLSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAKLHFLKIQYETFSM  142
Distribution of 177 Blast Hits on the Query Sequence
