RID=1168942817-23418-165833079038.BLASTQ4, Contig239

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168942817-23418-165833079038.BLASTQ4 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig239
Length=483

Distribution of 17 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|18401374|ref|NP_566567.1|  transcription factor [Arabidopsi...   116    4e-26 
gi|21618012|gb|AAM67062.1|  unknown [Arabidopsis thaliana]          111    1e-24 
gi|18397627|ref|NP_566287.1|  transcription factor [Arabidopsi...   111    1e-24 
gi|92874556|gb|ABE82804.1|  Helix-loop-helix DNA-binding [Medicag   100    2e-21
gi|18390998|ref|NP_563839.1|  transcription factor [Arabidopsi...  72.8    6e-13 
gi|115452643|ref|NP_001049922.1|  Os03g0311600 [Oryza sativa (...  69.7    5e-12 
gi|24059889|dbj|BAC21355.1|  bHLH protein-like [Oryza sativa (jap  62.4    8e-10 
gi|51970372|dbj|BAD43878.1|  unknown protein [Arabidopsis thalian  50.4    3e-06 
gi|18397368|ref|NP_566260.1|  transcription factor [Arabidopsi...  50.4    3e-06 
gi|21554109|gb|AAM63189.1|  unknown [Arabidopsis thaliana]         32.3    0.83  
gi|18407313|ref|NP_566098.1|  transcription factor/ transcript...  32.3    0.83  
gi|13540405|gb|AAK29456.1|AF352253_1  histone H1 [Lens culinaris]  30.4    3.2  
gi|13540403|gb|AAK29455.1|AF352252_1  histone H1 [Lens culinaris]  30.4    3.2  
gi|13540401|gb|AAK29454.1|AF352251_1  histone H1 [Lens culinaris]  30.4    3.2  
gi|68300849|gb|AAY89362.1|  RNA polymerase IV largest subunit [Ar  28.9    9.2   
gi|79571777|ref|NP_181532.2|  NRPD1b; DNA binding / DNA-direct...  28.9    9.2   
gi|2088657|gb|AAB95289.1|  unknown protein [Arabidopsis thaliana]  28.9    9.2

Alignments

 

>gi|18401374|ref|NP_566567.1|  transcription factor [Arabidopsis thaliana]
 gi|30684372|ref|NP_850601.1|  transcription factor [Arabidopsis thaliana]
 gi|7670034|dbj|BAA94988.1|  unnamed protein product [Arabidopsis thaliana]
 gi|15010766|gb|AAK74042.1|  AT3g17100/K14A17_22_ [Arabidopsis thaliana]
 gi|16323264|gb|AAL15366.1|  AT3g17100/K14A17_22_ [Arabidopsis thaliana]
 gi|110740413|dbj|BAF02101.1|  hypothetical protein [Arabidopsis thaliana]
Length=230

 Score =  116 bits (290),  Expect = 4e-26
 Identities = 98/160 (61%), Positives = 116/160 (72%), Gaps = 7/160 (4%)
 Frame = +2

Query  8    ENQQSQNQNHARWKSEAQQQIYSSKLLQAL-----SQVSLNSPSPSAPRGGravreaadr  172
            E   S + +  +W+SE QQQIYS+KL+ AL     SQ   +S S S PRGGRAVRE ADR
Sbjct  38   EKSPSPSISLEKWRSEKQQQIYSTKLVHALRELRISQQPSSSSSSSIPRGGRAVREVADR  97

Query  173  alavaaKGRTRWSRAILTNrlklkfrkqkrqr-GSaaavaavTGSIRSKKPRVSVLKLKS  349
            ALAVAA+G+T WSRAIL+  +KLKFRK KRQR  +       TGSIRSKK R +VL+LK+
Sbjct  98   ALAVAARGKTLWSRAILSKAVKLKFRKHKRQRISNPTTTTLTTGSIRSKKQRATVLRLKA  157

Query  350  KSLPAVQRKVKVLGRVVPRCRKQPATRVFFEETTDYIAAL  469
            K LPAVQRKVKVL R+VP CRKQ +  V  EETTDYIAA+
Sbjct  158  KGLPAVQRKVKVLSRLVPGCRKQ-SLPVVLEETTDYIAAM  196


>gi|21618012|gb|AAM67062.1|  unknown [Arabidopsis thaliana]
Length=221

 Score =  111 bits (277),  Expect = 1e-24
 Identities = 96/154 (62%), Positives = 113/154 (73%), Gaps = 10/154 (6%)
 Frame = +2

Query  35   HARWKSEAQQQIYSSKLLQALSQVSLNSP-----SPSAPRGGravreaadralavaaKGR  199
            HARW+SE QQ+IYS+KL QAL QV LNS      SP+A + G+AVREAADRALAV+A+GR
Sbjct  45   HARWRSEKQQRIYSAKLFQALQQVRLNSSASTSSSPTAQKRGKAVREAADRALAVSARGR  104

Query  200  TRWSRAILTNrlklkfrkqkrqrGSaaavaavT----GSIRSKKPRVSVLKLKSKSLPAV  367
            T WSRAIL NR+KLKFRKQ+R R + A  A  T     S RS+K RVSVL+L  KS+P V
Sbjct  105  TLWSRAILANRIKLKFRKQRRPRATVAVPAMTTVVSSSSNRSRKRRVSVLRLNKKSIPDV  164

Query  368  QRKVKVLGRVVPRCRKQPATRVFFEETTDYIAAL  469
             RKV+VLGR+VP C KQ +  V  EE TDYI AL
Sbjct  165  NRKVRVLGRLVPGCGKQ-SVPVILEEATDYIQAL  197


>gi|18397627|ref|NP_566287.1|  transcription factor [Arabidopsis thaliana]
 gi|42572287|ref|NP_974239.1|  unknown protein [Arabidopsis thaliana]
 gi|12322686|gb|AAG51338.1|AC020580_18  unknown protein; 31055-31720 [Arabidopsis thaliana]
 gi|19698883|gb|AAL91177.1|  unknown protein [Arabidopsis thaliana]
 gi|20260084|gb|AAM13389.1|  unknown protein [Arabidopsis thaliana]
Length=221

 Score =  111 bits (277),  Expect = 1e-24
 Identities = 96/154 (62%), Positives = 113/154 (73%), Gaps = 10/154 (6%)
 Frame = +2

Query  35   HARWKSEAQQQIYSSKLLQALSQVSLNSP-----SPSAPRGGravreaadralavaaKGR  199
            HARW+SE QQ+IYS+KL QAL QV LNS      SP+A + G+AVREAADRALAV+A+GR
Sbjct  45   HARWRSEKQQRIYSAKLFQALQQVRLNSSASTSSSPTAQKRGKAVREAADRALAVSARGR  104

Query  200  TRWSRAILTNrlklkfrkqkrqrGSaaavaavT----GSIRSKKPRVSVLKLKSKSLPAV  367
            T WSRAIL NR+KLKFRKQ+R R + A  A  T     S RS+K RVSVL+L  KS+P V
Sbjct  105  TLWSRAILANRIKLKFRKQRRPRATMAIPAMTTVVSSSSNRSRKRRVSVLRLNKKSIPDV  164

Query  368  QRKVKVLGRVVPRCRKQPATRVFFEETTDYIAAL  469
             RKV+VLGR+VP C KQ +  V  EE TDYI AL
Sbjct  165  NRKVRVLGRLVPGCGKQ-SVPVILEEATDYIQAL  197


>gi|92874556|gb|ABE82804.1|  Helix-loop-helix DNA-binding [Medicago truncatula]
Length=201

 Score =  100 bits (249),  Expect = 2e-21
 Identities = 86/155 (55%), Positives = 110/155 (70%), Gaps = 11/155 (7%)
 Frame = +2

Query  5    RENQQSQNQNHARWKSEAQQQIYSSKLLQALSQVSLNSPSPSAPRGGravreaadralav  184
            + +QQ Q Q + +WKS+ QQQIYS+KL QA+++V+    S S PR G+AVREAADRALAV
Sbjct  32   KHHQQDQIQINPKWKSQEQQQIYSTKLRQAITRVN----SSSTPRRGKAVREAADRALAV  87

Query  185  aaKGRTRWSRAILTNrlklkfrkqkrqrGSaaavaavTGSIRSKKPRVSVLKLKSKSLPA  364
             A+GRTRWSR IL  RLK+KFRK+K  R +A        S RSKK RV+V +LK K +P+
Sbjct  88   TARGRTRWSRTILMTRLKIKFRKKKPNRVTALP------STRSKKSRVNVFRLKGKVVPS  141

Query  365  VQRKVKVLGRVVPRCRKQPATRVFFEETTDYIAAL  469
            +QRKV+ LG +VP C+K+P   V  EE  DYI AL
Sbjct  142  MQRKVRFLGGLVPGCKKEPLP-VILEEAIDYIPAL  175


>gi|18390998|ref|NP_563839.1|  transcription factor [Arabidopsis thaliana]
 gi|3249098|gb|AAC24081.1|  ESTs gb|T04610, gb|N38459, gb|T45174, gb|R30481 and gb|N64971 
come from this gene. [Arabidopsis thaliana]
 gi|27764992|gb|AAO23617.1|  At1g09250 [Arabidopsis thaliana]
 gi|110743366|dbj|BAE99570.1|  hypothetical protein [Arabidopsis thaliana]
Length=207

 Score = 72.8 bits (177),  Expect = 6e-13
 Identities = 64/161 (39%), Positives = 96/161 (59%), Gaps = 18/161 (11%)
 Frame = +2

Query  8    ENQQSQNQNHARWKSEAQQQIYSSKLLQALSQVSLNSPSPS-------APRGGravreaa  166
            E ++   ++  RWK+   QQIY+ KL++AL +V   S + S            R +R+ A
Sbjct  32   EARRVNEESLKRWKTNRVQQIYACKLVEALRRVRQRSSTTSNNETDKLVSGAAREIRDTA  91

Query  167  dralavaaKGRTRWSRAILTNrlklkfrkqkrqrGSaaavaavTGSIRSKKPRVSVLKLK  346
            DR LA +A+G TRWSRAIL +R++ K +K ++ + S       TG+ +S+K      ++K
Sbjct  92   DRVLAASARGTTRWSRAILASRVRAKLKKHRKAKKS-------TGNCKSRKGLTETNRIK  144

Query  347  SKSLPAVQRKVKVLGRVVPRCRKQPATRVFFEETTDYIAAL  469
               LPAV+RK+K+LGR+VP CRK     +  +E TDYIAAL
Sbjct  145  ---LPAVERKLKILGRLVPGCRKVSVPNL-LDEATDYIAAL  181


>gi|115452643|ref|NP_001049922.1|  Os03g0311600 [Oryza sativa (japonica cultivar-group)]
 gi|108707789|gb|ABF95584.1|  expressed protein [Oryza sativa (japonica cultivar-group)]
 gi|113548393|dbj|BAF11836.1|  Os03g0311600 [Oryza sativa (japonica cultivar-group)]
Length=205

 Score = 69.7 bits (169),  Expect = 5e-12
 Identities = 72/156 (46%), Positives = 92/156 (58%), Gaps = 13/156 (8%)
 Frame = +2

Query  8    ENQQSQNQNHARWKSEAQQQIYSSKLLQALSQVSLNSPSPS--APRGGravreaadrala  181
            E++ S+ Q  ++W++    +IYSSKLL A+  V   SPS S  AP   RAVREAADRALA
Sbjct  28   ESEGSEAQP-SKWRTRRAHEIYSSKLLDAIRLVRSGSPSSSAAAPPRSRAVREAADRALA  86

Query  182  vaaKGRTRWSRAILTNrlklkfrkqkrqrGSaaavaavTGSIRSKKPRVSVLKLKSKSLP  361
            V+A+GRTRWSRAIL +        ++R + +  A      S  S+ P  S    K    P
Sbjct  87   VSARGRTRWSRAILAS-------HRRRIQAARRARLREAISPPSRHPSSS--SGKGPKAP  137

Query  362  AVQRKVKVLGRVVPRCRKQPATRVFFEETTDYIAAL  469
            A+ RK KVLGR+VP CRK P       E +DYIAAL
Sbjct  138  ALARKAKVLGRLVPGCRKLPFP-ALLAEASDYIAAL  172


>gi|24059889|dbj|BAC21355.1|  bHLH protein-like [Oryza sativa (japonica cultivar-group)]
Length=177

 Score = 62.4 bits (150),  Expect = 8e-10
 Identities = 63/144 (43%), Positives = 78/144 (54%), Gaps = 17/144 (11%)
 Frame = +2

Query  38   ARWKSEAQQQIYSSKLLQALSQVSLNSPSPSAPRGGravreaadralavaaKGRTRWSRA  217
            ARW++  +Q+ YSSKLL AL  V   S  PS P   R VR AADRALAVAA+GR+RWSRA
Sbjct  23   ARWRTRREQESYSSKLLDALRLVRAASGRPS-PASSREVRHAADRALAVAARGRSRWSRA  81

Query  218  ILTNrlklkfrkqkrqrGSaaavaavTGSIRSKKPRVSVLKLKSKSLPAVQRKVKVLGRV  397
            IL +R +    ++ R                   P     +   +S P +  K KVLGR+
Sbjct  82   ILASRARACALRRVRL---------------GAPPPPPAARPAPRSRPPLASKAKVLGRL  126

Query  398  VPRCRKQPATRVFFEETTDYIAAL  469
            VP CRK  A      E +DYIAAL
Sbjct  127  VPGCRKL-AFPALLAEASDYIAAL  149


>gi|51970372|dbj|BAD43878.1|  unknown protein [Arabidopsis thaliana]
Length=207

 Score = 50.4 bits (119),  Expect = 3e-06
 Identities = 55/143 (38%), Positives = 77/143 (53%), Gaps = 20/143 (13%)
 Frame = +2

Query  41   RWKSEAQQQIYSSKLLQALSQVSLNSPSPSAPRGGravreaadralavaaKGRTRWSRAI  220
            RW++   Q++YS KL  AL +           R    VR+ AD+ LA  A+G TRWSRAI
Sbjct  58   RWRATTAQKVYSLKLYDALQR----------SRRSATVRDTADKVLATTARGATRWSRAI  107

Query  221  LTNrlklkfrkqkrqrGSaaavaavTGSIRSKKPRVSVLKLKSKSLPAVQRKVKVLGRVV  400
            L +R     R+++  + ++A  AA+ GS  S + R          L AV  +V+VLG +V
Sbjct  108  LVSRFGTSLRRRRNTKPASALAAAIRGSGGSGRRR---------KLSAVGNRVRVLGGLV  158

Query  401  PRCRKQPATRVFFEETTDYIAAL  469
            P CR+  A     +ET DYIAAL
Sbjct  159  PGCRR-TALPELLDETADYIAAL  180


>gi|18397368|ref|NP_566260.1|  transcription factor [Arabidopsis thaliana]
 gi|6714393|gb|AAF26082.1|AC012393_8  hypothetical protein [Arabidopsis thaliana]
 gi|21554259|gb|AAM63334.1|  unknown [Arabidopsis thaliana]
 gi|51971903|dbj|BAD44616.1|  unknown protein [Arabidopsis thaliana]
 gi|94442469|gb|ABF19022.1|  At3g05800 [Arabidopsis thaliana]
Length=211

 Score = 50.4 bits (119),  Expect = 3e-06
 Identities = 55/143 (38%), Positives = 77/143 (53%), Gaps = 20/143 (13%)
 Frame = +2

Query  41   RWKSEAQQQIYSSKLLQALSQVSLNSPSPSAPRGGravreaadralavaaKGRTRWSRAI  220
            RW++   Q++YS KL  AL +           R    VR+ AD+ LA  A+G TRWSRAI
Sbjct  62   RWRATTAQKVYSLKLYDALQR----------SRRSATVRDTADKVLATTARGATRWSRAI  111

Query  221  LTNrlklkfrkqkrqrGSaaavaavTGSIRSKKPRVSVLKLKSKSLPAVQRKVKVLGRVV  400
            L +R     R+++  + ++A  AA+ GS  S + R          L AV  +V+VLG +V
Sbjct  112  LVSRFGTSLRRRRNTKPASALAAAIRGSGGSGRRR---------KLSAVGNRVRVLGGLV  162

Query  401  PRCRKQPATRVFFEETTDYIAAL  469
            P CR+  A     +ET DYIAAL
Sbjct  163  PGCRR-TALPELLDETADYIAAL  184


>gi|21554109|gb|AAM63189.1|  unknown [Arabidopsis thaliana]
Length=86

 Score = 32.3 bits (72),  Expect = 0.83
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +2

Query  317  KPRVSVLKLKSKSLPAVQRKVKVLGRVVPRCRKQPATRVFFEETTDYIAAL  469
            +PR SV +   +   A+ R+VK L  +VP  +        F +T DYI AL
Sbjct  17   RPRKSV-EASRRPCRAIHRRVKTLKELVPNTKTSEGLDGLFRQTADYILAL  66


>gi|18407313|ref|NP_566098.1|  transcription factor/ transcription regulator [Arabidopsis thaliana]
 gi|2275205|gb|AAB63827.1|  expressed protein [Arabidopsis thaliana]
 gi|89111836|gb|ABD60690.1|  At2g47270 [Arabidopsis thaliana]
Length=102

 Score = 32.3 bits (72),  Expect = 0.83
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +2

Query  317  KPRVSVLKLKSKSLPAVQRKVKVLGRVVPRCRKQPATRVFFEETTDYIAAL  469
            +PR SV +   +   A+ R+VK L  +VP  +        F +T DYI AL
Sbjct  33   RPRKSV-EASRRPCRAIHRRVKTLKELVPNTKTSEGLDGLFRQTADYILAL  82


>gi|13540405|gb|AAK29456.1|AF352253_1  histone H1 [Lens culinaris]
Length=293

 Score = 30.4 bits (67),  Expect = 3.2
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 0/40 (0%)
 Frame = +2

Query  311  SKKPRVSVLKLKSKSLPAVQRKVKVLGRVVPRCRKQPATR  430
            +KKP  S  K K K+ PA + K K   +  P  + +PA +
Sbjct  132  AKKPAASKPKAKPKAKPAAKSKAKPAAKAKPAAKAKPAAK  171


>gi|13540403|gb|AAK29455.1|AF352252_1  histone H1 [Lens culinaris]
Length=293

 Score = 30.4 bits (67),  Expect = 3.2
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 0/40 (0%)
 Frame = +2

Query  311  SKKPRVSVLKLKSKSLPAVQRKVKVLGRVVPRCRKQPATR  430
            +KKP  S  K K K+ PA + K K   +  P  + +PA +
Sbjct  132  AKKPAASKPKAKPKAKPAAKSKAKPAAKAKPAAKAKPAAK  171


>gi|13540401|gb|AAK29454.1|AF352251_1  histone H1 [Lens culinaris]
Length=281

 Score = 30.4 bits (67),  Expect = 3.2
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 0/40 (0%)
 Frame = +2

Query  311  SKKPRVSVLKLKSKSLPAVQRKVKVLGRVVPRCRKQPATR  430
            +KKP  S  K K K+ PA + K K   +  P  + +PA +
Sbjct  132  AKKPAASKPKAKPKAKPAAKSKAKPAAKAKPAAKAKPAAK  171


>gi|68300849|gb|AAY89362.1|  RNA polymerase IV largest subunit [Arabidopsis thaliana]
Length=1976

 Score = 28.9 bits (63),  Expect = 9.2
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 0/41 (0%)
 Frame = +2

Query  2     ARENQQSQNQNHARWKSEAQQQIYSSKLLQALSQVSLNSPS  124
             ++   QSQ+Q+ ++ +S++Q Q  S    Q+ SQ    SPS
Sbjct  1917  SQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSPSQTQTQSPS  1957


>gi|79571777|ref|NP_181532.2|  NRPD1b; DNA binding / DNA-directed RNA polymerase [Arabidopsis 
thaliana]
 gi|59939210|gb|AAX12373.1|  DNA-directed RNA polymerase alpha subunit [Arabidopsis thaliana]
 gi|62822917|gb|AAY15198.1|  DNA-dependent RNA polymerase large subunit [Arabidopsis thaliana]
Length=1976

 Score = 28.9 bits (63),  Expect = 9.2
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 0/41 (0%)
 Frame = +2

Query  2     ARENQQSQNQNHARWKSEAQQQIYSSKLLQALSQVSLNSPS  124
             ++   QSQ+Q+ ++ +S++Q Q  S    Q+ SQ    SPS
Sbjct  1917  SQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSPSQTQTQSPS  1957


>gi|2088657|gb|AAB95289.1|  unknown protein [Arabidopsis thaliana]
Length=839

 Score = 28.9 bits (63),  Expect = 9.2
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 0/41 (0%)
 Frame = +2

Query  2    ARENQQSQNQNHARWKSEAQQQIYSSKLLQALSQVSLNSPS  124
            ++   QSQ+Q+ ++ +S++Q Q  S    Q+ SQ    SPS
Sbjct  780  SQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSPSQTQTQSPS  820

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 332
Number of extensions: 5
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 483
Length of database: 101054579
Length adjustment: 104
Effective length of query: 379
Effective length of database: 71586283
Effective search space: 4080418131
Effective search space used: 4080418131
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 63 (28.9 bits)