Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168944062-6738-190276367913.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig280 Length=589
Score E Sequences producing significant alignments: (Bits) Value gi|15219950|ref|NP_173692.1| PFL (POINTED FIRST LEAVES); RNA ... 267 2e-71 gi|13877525|gb|AAK43840.1|AF370463_1 S18.A ribosomal protein ... 266 5e-71 gi|40287492|gb|AAR83860.1| putative ribosomal protein [Capsicum 259 4e-69 gi|92872600|gb|ABE81204.1| Ribosomal protein S13 [Medicago tr... 259 5e-69 gi|76573321|gb|ABA46765.1| unknown [Solanum tuberosum] 258 1e-68 gi|115455881|ref|NP_001051541.1| Os03g0794700 [Oryza sativa (... 256 3e-68 gi|22204120|gb|AAM92708.1| putative ribosomal protein S18 [Triti 252 6e-67 gi|115470817|ref|NP_001059007.1| Os07g0173700 [Oryza sativa (... 249 5e-66 gi|115470815|ref|NP_001059006.1| Os07g0173500 [Oryza sativa (... 246 4e-65 gi|1350947|sp|P49202|RS18_CHLRE 40S ribosomal protein S18 >gi... 213 3e-55 gi|116054984|emb|CAL57061.1| unnamed protein product [Ostreococc 113 6e-25 gi|25553586|dbj|BAC24851.1| ribosomal protein S18-like [Oryza... 102 8e-22 gi|87248054|gb|ABD36081.1| ribosomal protein S13 [Beta vulgaris 49.7 8e-06 gi|60498746|dbj|BAC19882.2| Ribosomal protein S13 [Oryza sativa 49.7 8e-06 gi|11467125|ref|NP_054426.1| ribosomal protein S13 [Marchanti... 49.3 1e-05 gi|24636948|gb|AAN63487.1|AF315223_1 ribosomal protein S13 [Amar 47.8 3e-05 gi|94502651|ref|YP_588375.1| ribosomal protein S13 [Zea mays ... 47.4 4e-05 gi|11830847|emb|CAA89893.1| ribosomal protein S13 [Magnolia x so 47.4 4e-05 gi|9838401|ref|NP_064014.1| ribosomal protein S13 [Beta vulga... 47.4 4e-05 gi|56791641|gb|AAW30358.1| ribosomal protein S13 [Lonicera sp. B 47.0 5e-05 gi|91208878|ref|YP_539039.1| ribosomal protein S13 [Physcomit... 46.6 7e-05 gi|110225647|ref|YP_665653.1| ribosomal protein S13 [Nephrose... 46.6 7e-05 gi|24636952|gb|AAN63489.1|AF315225_1 ribosomal protein S13 [Narc 45.8 1e-04 gi|24636950|gb|AAN63488.1|AF315224_1 ribosomal protein S13 [Cliv 45.4 1e-04 gi|22550356|ref|NP_689356.1| ribosomal protein S13 [Chaetosph... 45.1 2e-04 gi|134059|sp|P23209|RT13_DAUCA Mitochondrial ribosomal protein S 45.1 2e-04 gi|33341156|gb|AAQ15139.1|AF355064_1 RPS13 [Danae racemosa] >... 43.1 7e-04 gi|62989781|emb|CAD91283.1| mitochondrial ribosomal protein RPS1 42.7 0.001 gi|57281964|emb|CAD19541.1| ribosomal protein S13 [Aspidistra el 42.7 0.001 gi|57281966|emb|CAD19542.1| ribosomal protein S13 [Convallaria k 42.7 0.001 gi|110816065|ref|YP_684397.1| ribosomal protein S13 [Oltmanns... 42.4 0.001 gi|57281980|emb|CAD19549.1| ribosomal protein S13 [Tecophilaea v 42.4 0.001 gi|56791625|gb|AAW30350.1| ribosomal protein S13 [Amborella tric 42.4 0.001 gi|33341144|gb|AAQ15133.1|AF355058_1 RPS13 [Asparagus sp. Quagli 42.0 0.002 gi|62989769|emb|CAD91277.1| mitochondrial ribosomal protein R... 41.6 0.002 gi|24636925|gb|AAN63475.1|AF314097_1 ribosomal protein S13 [Agap 41.6 0.002 gi|57013930|ref|YP_173403.1| ribosomal protein S13 [Nicotiana... 41.6 0.002 gi|62989825|emb|CAD91305.1| mitochondrial ribosomal protein RPS1 41.2 0.003 gi|56791627|gb|AAW30351.1| ribosomal protein S13 [Calycanthus fl 41.2 0.003 gi|24636956|gb|AAN63491.1|AF315227_1 ribosomal protein S13 [Sans 41.2 0.003 gi|30141201|emb|CAD30283.1| ribosomal protein S13 [Hemerocallis 41.2 0.003 gi|62989725|emb|CAD91255.1| mitochondrial ribosomal protein R... 40.8 0.004 gi|62989819|emb|CAD91302.1| mitochondrial ribosomal protein RPS1 40.8 0.004 gi|62989713|emb|CAD91249.1| mitochondrial ribosomal protein RPS1 40.8 0.004 gi|57281988|emb|CAD19553.1| ribosomal protein S13 [Campynema lin 40.8 0.004 gi|57281992|emb|CAD19555.1| ribosomal protein S13 [Philesia b... 40.8 0.004 gi|33341146|gb|AAQ15134.1|AF355059_1 RPS13 [Asphodelus sp. Quagl 40.8 0.004 gi|76780560|emb|CAD92010.1| mitochondrial ribosomal protein RPS1 40.8 0.004 gi|4467407|emb|CAA69616.2| ribosomal protein S13 [Elymus sibiric 40.8 0.004 gi|16215380|emb|CAC80432.1| ribosomal protein S13 [Helianthus an 40.8 0.004 gi|62989721|emb|CAD91253.1| mitochondrial ribosomal protein R... 40.4 0.005 gi|62989805|emb|CAD91295.1| mitochondrial ribosomal protein RPS1 40.4 0.005 gi|62989711|emb|CAD91248.1| mitochondrial ribosomal protein R... 40.4 0.005 gi|62989767|emb|CAD91276.1| mitochondrial ribosomal protein RPS1 40.4 0.005 gi|62989723|emb|CAD91254.1| mitochondrial ribosomal protein RPS1 40.4 0.005 gi|62989815|emb|CAD91300.1| mitochondrial ribosomal protein R... 40.4 0.005 gi|62989831|emb|CAD91308.1| mitochondrial ribosomal protein RPS1 40.4 0.005 gi|62989715|emb|CAD91250.1| mitochondrial ribosomal protein R... 40.4 0.005 gi|33341152|gb|AAQ15137.1|AF355062_1 RPS13 [Dracaena sp. Quaglia 40.4 0.005 gi|24636929|gb|AAN63477.1|AF314099_1 ribosomal protein S13 [I... 40.4 0.005 gi|24636943|gb|AAN63484.1|AF314106_1 ribosomal protein S13 [Spir 40.4 0.005 gi|24636941|gb|AAN63483.1|AF314105_1 ribosomal protein S13 [Sera 40.4 0.005 gi|62989737|emb|CAD91261.1| mitochondrial ribosomal protein RPS1 40.0 0.006 gi|62989743|emb|CAD91264.1| mitochondrial ribosomal protein R... 40.0 0.006 gi|62989799|emb|CAD91292.1| mitochondrial ribosomal protein RPS1 40.0 0.006 gi|57281996|emb|CAD19557.1| ribosomal protein S13 [Ripogonum els 40.0 0.006 gi|57281986|emb|CAD19552.1| ribosomal protein S13 [Eustrephus la 40.0 0.006 gi|33341158|gb|AAQ15140.1|AF355065_1 RPS13 [Colchicum persicum] 40.0 0.006 gi|89280752|ref|YP_514659.1| ribosomal protein S13 [Oryza sat... 40.0 0.006 gi|24636931|gb|AAN63478.1|AF314100_1 ribosomal protein S13 [Trit 40.0 0.006 gi|76780564|emb|CAD92012.1| mitochondrial ribosomal protein RPS1 40.0 0.006 gi|81176511|ref|YP_398395.1| rp13 [Triticum aestivum] >gi|134... 40.0 0.006 gi|62989739|emb|CAD91262.1| mitochondrial ribosomal protein RPS1 39.7 0.008 gi|62989817|emb|CAD91301.1| mitochondrial ribosomal protein RPS1 39.7 0.008 gi|62989771|emb|CAD91278.1| mitochondrial ribosomal protein RPS1 39.7 0.008 gi|57281976|emb|CAD19547.1| ribosomal protein S13 [Behnia ret... 39.7 0.008 gi|57281984|emb|CAD19551.1| ribosomal protein S13 [Drymophila sp 39.7 0.008 gi|57281960|emb|CAD19539.1| ribosomal protein S13 [Rhodohypox... 39.7 0.008 gi|57281968|emb|CAD19543.1| ribosomal protein S13 [Milligania... 39.7 0.008 gi|41469448|gb|AAS07249.1| putative 30S ribosomal protein S13... 39.7 0.008 gi|56791631|gb|AAW30353.1| ribosomal protein S13 [Laurus nobilis 39.7 0.008 gi|24636958|gb|AAN63492.1|AF315228_1 ribosomal protein S13 [Alst 39.7 0.008 gi|24636962|gb|AAN63494.1|AF315230_1 ribosomal protein S13 [Tuli 39.7 0.008 gi|15232526|ref|NP_188139.1| ATERF-4/ATERF4/ERF4/RAP2.5; DNA ... 39.7 0.008 gi|24636927|gb|AAN63476.1|AF314098_1 ribosomal protein S13 [M... 39.7 0.008 gi|32363341|sp|Q8LPW2|RT13_SOYBN Small ribosomal subunit prot... 39.7 0.008 gi|62989797|emb|CAD91291.1| mitochondrial ribosomal protein RPS1 39.3 0.011 gi|62989775|emb|CAD91280.1| mitochondrial ribosomal protein RPS1 39.3 0.011 gi|57281982|emb|CAD19550.1| ribosomal protein S13 [Luzuriaga rad 39.3 0.011 gi|57281998|emb|CAD19558.1| ribosomal protein S13 [Smilax gla... 39.3 0.011 gi|114151585|ref|YP_740351.1| ribosomal protein S13 [Zea pere... 39.3 0.011 gi|56791633|gb|AAW30354.1| ribosomal protein S13 [Liriodendron t 39.3 0.011 gi|24636960|gb|AAN63493.1|AF315229_1 ribosomal protein S13 [Iris 39.3 0.011 gi|32363483|sp|P08977|RT13_MAIZE Mitochondrial ribosomal prot... 39.3 0.011 gi|11497468|ref|NP_042258.1| ribosomal protein S13 [Protothec... 39.3 0.011 gi|11830845|emb|CAA89892.1| ribosomal protein S13 [Magnolia x... 39.3 0.011 gi|62989733|emb|CAD91259.1| mitochondrial ribosomal protein RPS1 38.9 0.014 gi|62989813|emb|CAD91299.1| mitochondrial ribosomal protein RPS1 38.9 0.014 gi|62989809|emb|CAD91297.1| mitochondrial ribosomal protein R... 38.9 0.014 gi|76780566|emb|CAD92013.1| mitochondrial ribosomal protein R... 38.9 0.014
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 423 Number of extensions: 6 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 589 Length of database: 101054579 Length adjustment: 107 Effective length of query: 482 Effective length of database: 70736236 Effective search space: 6295525004 Effective search space used: 6295525004 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 64 (29.3 bits)