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BLASTX 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman 
(1997), "Gapped BLAST and PSI-BLAST: a new generation of 
protein database search programs", Nucleic Acids Res. 25:3389-3402.

RID: 1168944443-25998-32105521816.BLASTQ1


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
           4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig300
Length=486


Distribution of 6 Blast Hits on the Query Sequence



                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|18407646|ref|NP_564800.1|  unknown protein [Arabidopsis tha...   161    1e-39 UniGene infoGene info
gi|115465898|ref|NP_001056548.1|  Os06g0104100 [Oryza sativa (...   152    7e-37 Gene info
gi|116059346|emb|CAL55053.1|  Phytoene/squalene synthetase (ISS)   68.9    8e-12
gi|4512660|gb|AAD21714.1|  hypothetical protein [Arabidopsis t...  29.3    7.2  
gi|30689197|ref|NP_181823.2|  unknown protein [Arabidopsis tha...  29.3    7.2   UniGene infoGene info
gi|115453141|ref|NP_001050171.1|  Os03g0364400 [Oryza sativa (...  28.9    9.4   Gene info
Alignments
>gi|18407646|ref|NP_564800.1| UniGene infoGene info unknown protein [Arabidopsis thaliana] gi|6630461|gb|AAF19549.1|AC007190_17 Gene info F23N19.9 [Arabidopsis thaliana] gi|21553608|gb|AAM62701.1| UniGene infoGene info unknown [Arabidopsis thaliana] gi|109946495|gb|ABG48426.1| Gene info At1g62730 [Arabidopsis thaliana] Length=304 Score = 161 bits (407), Expect = 1e-39 Identities = 78/93 (83%), Positives = 83/93 (89%), Gaps = 0/93 (0%) Frame = +2 Query 110 GVSSSLRAAFSYCVQQVRCYDYHHYLCLLELPPNMRKAAFALRAFNVETARAMDVASDPK 289 G SSSLR+A SYCVQQVR YDYHHYLCLLELP MRKAAFALRAFNVETARAMDVASDPK Sbjct 4 GGSSSLRSALSYCVQQVRNYDYHHYLCLLELPTEMRKAAFALRAFNVETARAMDVASDPK 63 Query 290 IGLMRLVWWQEAIDKIYANKLIEHPTAQALSFS 388 IGLMRL+WWQEAIDK+Y K I HP AQALS++ Sbjct 64 IGLMRLLWWQEAIDKLYTKKPINHPAAQALSWA 96 >gi|115465898|ref|NP_001056548.1| Gene info Os06g0104100 [Oryza sativa (japonica cultivar-group)] gi|24413977|dbj|BAC22228.1| Gene info unknown protein [Oryza sativa (japonica cultivar-group)] gi|113594588|dbj|BAF18462.1| Gene info Os06g0104100 [Oryza sativa (japonica cultivar-group)] Length=302 Score = 152 bits (383), Expect = 7e-37 Identities = 75/116 (64%), Positives = 93/116 (80%), Gaps = 2/116 (1%) Frame = +2 Query 122 SLRAAFSYCVQQVRCYDYHHYLCLLELPPNMRKAAFALRAFNVETARAMDVASDPKIGLM 301 +LR A SYCVQQVR YDYHHYLCLL LPP MRKAAFA RAFN+ETA+AMDV SDPK GLM Sbjct 10 NLRTALSYCVQQVRNYDYHHYLCLLHLPPAMRKAAFAFRAFNIETAKAMDVVSDPKTGLM 69 Query 302 RLVWWQEAIDKIYANKLIEHPTAQALSFSDI*K*KLARLG*NGXVESFGINDASRE 469 RL+WW++ +DK++ANKL+EHP AQ LS S + + K+++ VE+ INDA+R+ Sbjct 70 RLLWWKDVVDKVFANKLVEHPVAQVLS-SVVSEHKISKHWLKRSVEA-RINDANRD 123 >gi|116059346|emb|CAL55053.1| Phytoene/squalene synthetase (ISS) [Ostreococcus tauri] Length=437 Score = 68.9 bits (167), Expect = 8e-12 Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 2/88 (2%) Frame = +2 Query 125 LRAAFSYCVQQVRCYDYHHYLCLLELPPNMRKAAFALRAFNVETARAMDVASDPKIGLMR 304 LRAA +CV+ VR DY YLC L LP + AAFA+RA N ET + AS + R Sbjct 26 LRAALRHCVEVVRARDYETYLCTLALPRALAPAAFAIRALNCETGSIVGSASSSDAAVAR 85 Query 305 LVWWQEAI--DKIYANKLIEHPTAQALS 382 L+WW +A+ D HP A+A++ Sbjct 86 LMWWSDALVGDDEGPGGTPAHPVARAVA 113 >gi|4512660|gb|AAD21714.1| hypothetical protein [Arabidopsis thaliana] gi|20197871|gb|AAM15295.1| hypothetical protein [Arabidopsis thaliana] Length=481 Score = 29.3 bits (64), Expect = 7.2 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 0/26 (0%) Frame = +2 Query 53 VPFETLRSLSGNHSRDLMNGVSSSLR 130 + FE L+ L GN ++DL+ G+ S R Sbjct 297 IVFELLQQLKGNRTKDLLEGIKKSTR 322 >gi|30689197|ref|NP_181823.2| UniGene infoGene info unknown protein [Arabidopsis thaliana] gi|26450698|dbj|BAC42458.1| UniGene infoGene info unknown protein [Arabidopsis thaliana] gi|32815829|gb|AAP88299.1| UniGene infoGene info At2g42950 [Arabidopsis thaliana] Length=501 Score = 29.3 bits (64), Expect = 7.2 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 0/26 (0%) Frame = +2 Query 53 VPFETLRSLSGNHSRDLMNGVSSSLR 130 + FE L+ L GN ++DL+ G+ S R Sbjct 317 IVFELLQQLKGNRTKDLLEGIKKSTR 342 >gi|115453141|ref|NP_001050171.1| Gene info Os03g0364400 [Oryza sativa (japonica cultivar-group)] gi|108708318|gb|ABF96113.1| Gene info Protein kinase APK1A, chloroplast precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] gi|113548642|dbj|BAF12085.1| Gene info Os03g0364400 [Oryza sativa (japonica cultivar-group)] Length=447 Score = 28.9 bits (63), Expect = 9.4 Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 0/54 (0%) Frame = -3 Query 328 NGFLPPDKAHETNLGIRSNIHSSGSFNIEGAECKCSLSHVRGKLKKAEVMMIII 167 +G+ P+ +L I+S+++S G +E + ++ HVRG+ A+ ++ I+ Sbjct 279 HGYAAPEYVMTGHLNIKSDVYSYGVVLLELLTGRRAMEHVRGRSLHADQVVKIV 332
  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 334
Number of extensions: 8
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 486
Length of database: 101054579
Length adjustment: 104
Effective length of query: 382
Effective length of database: 71586283
Effective search space: 4152004414
Effective search space used: 4152004414
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 63 (28.9 bits)