RID=1168944731-26802-211675163838.BLASTQ4, Contig303

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168944731-26802-211675163838.BLASTQ4 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig303
Length=320

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|92868228|gb|ABE78299.1|  Ribosomal protein S23, eukaryotic ...  66.2    7e-24
gi|77999293|gb|ABB16993.1|  unknown [Solanum tuberosum]            66.2    7e-24
gi|1173187|sp|P46297|RS23_FRAAN  40S ribosomal protein S23 (S1...  66.2    7e-24
gi|62287478|sp|Q9M5Z9|RS23_EUPES  40S ribosomal protein S23 >g...  66.2    7e-24
gi|15242574|ref|NP_195916.1|  structural constituent of riboso...  66.2    7e-24 
gi|18398604|ref|NP_566351.1|  structural constituent of riboso...  66.2    7e-24 
gi|6682246|gb|AAF23298.1|AC016661_23  putative 40S ribosomal prot  66.2    7e-24
gi|75706923|gb|ABA25923.1|  40S ribosomal protein [Picea mariana]  66.2    7e-24
gi|18476504|gb|AAL50317.1|  ultraviolet-B-inducible ribosomal pro  66.2    7e-24
gi|47026867|gb|AAT08659.1|  40S ribosomal protein S23 [Hyacinthus  66.2    7e-24
gi|42565432|gb|AAS20987.1|  40S ribosomal protein S23 [Hyacinthus  66.2    7e-24
gi|115440881|ref|NP_001044720.1|  Os01g0834500 [Oryza sativa (...  66.2    2e-23 
gi|116058273|emb|CAL53462.1|  Mitochondrial/chloroplast riboso...  61.2    3e-20
gi|23928437|gb|AAN40023.1|  putative 40S ribosomal protein [Zea m  66.2    1e-14
gi|115440883|ref|NP_001044721.1|  Os01g0834600 [Oryza sativa (...  66.2    1e-14 
gi|21672071|gb|AAM74433.1|AC123594_16  Putative ribosomal pote...  51.2    8e-09 
gi|115481628|ref|NP_001064407.1|  Os10g0350400 [Oryza sativa (...  35.0    0.078 
gi|19920123|gb|AAM08555.1|AC092749_8  Putative 40s ribosomal prot  33.5    0.23

Alignments

 

>gi|92868228|gb|ABE78299.1|  Ribosomal protein S23, eukaryotic and archaeal form [Medicago 
truncatula]
Length=142

 Score = 66.2 bits (160),  Expect(2) = 7e-24
 Identities = 33/33 (100%), Positives = 33/33 (100%), Gaps = 0/33 (0%)
 Frame = +2

Query  92   AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS  190
            AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct  110  AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS  142


 Score = 62.8 bits (151),  Expect(2) = 7e-24
 Identities = 27/28 (96%), Positives = 28/28 (100%), Gaps = 0/28 (0%)
 Frame = +1

Query  10   FVPNDGCLNYIEENDEVLIAGFGRKGHS  93
            FVPNDGCLNYIEENDEVLIAGFGRKGH+
Sbjct  83   FVPNDGCLNYIEENDEVLIAGFGRKGHA  110


>gi|77999293|gb|ABB16993.1|  unknown [Solanum tuberosum]
Length=142

 Score = 66.2 bits (160),  Expect(2) = 7e-24
 Identities = 33/33 (100%), Positives = 33/33 (100%), Gaps = 0/33 (0%)
 Frame = +2

Query  92   AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS  190
            AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct  110  AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS  142


 Score = 62.8 bits (151),  Expect(2) = 7e-24
 Identities = 27/28 (96%), Positives = 28/28 (100%), Gaps = 0/28 (0%)
 Frame = +1

Query  10   FVPNDGCLNYIEENDEVLIAGFGRKGHS  93
            FVPNDGCLNYIEENDEVLIAGFGRKGH+
Sbjct  83   FVPNDGCLNYIEENDEVLIAGFGRKGHA  110


>gi|1173187|sp|P46297|RS23_FRAAN  40S ribosomal protein S23 (S12)
 gi|643074|gb|AAA79921.1|  putative 40S ribosomal protein s12
Length=142

 Score = 66.2 bits (160),  Expect(2) = 7e-24
 Identities = 33/33 (100%), Positives = 33/33 (100%), Gaps = 0/33 (0%)
 Frame = +2

Query  92   AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS  190
            AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct  110  AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS  142


 Score = 62.8 bits (151),  Expect(2) = 7e-24
 Identities = 27/28 (96%), Positives = 28/28 (100%), Gaps = 0/28 (0%)
 Frame = +1

Query  10   FVPNDGCLNYIEENDEVLIAGFGRKGHS  93
            FVPNDGCLNYIEENDEVLIAGFGRKGH+
Sbjct  83   FVPNDGCLNYIEENDEVLIAGFGRKGHA  110


>gi|62287478|sp|Q9M5Z9|RS23_EUPES  40S ribosomal protein S23
 gi|6716785|gb|AAF26742.1|AF220539_1  40s ribosomal protein S23 [Euphorbia esula]
Length=142

 Score = 66.2 bits (160),  Expect(2) = 7e-24
 Identities = 33/33 (100%), Positives = 33/33 (100%), Gaps = 0/33 (0%)
 Frame = +2

Query  92   AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS  190
            AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct  110  AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS  142


 Score = 62.8 bits (151),  Expect(2) = 7e-24
 Identities = 27/28 (96%), Positives = 28/28 (100%), Gaps = 0/28 (0%)
 Frame = +1

Query  10   FVPNDGCLNYIEENDEVLIAGFGRKGHS  93
            FVPNDGCLNYIEENDEVLIAGFGRKGH+
Sbjct  83   FVPNDGCLNYIEENDEVLIAGFGRKGHA  110


>gi|15242574|ref|NP_195916.1|  structural constituent of ribosome [Arabidopsis thaliana]
 gi|27735238|sp|P49201|RS23B_ARATH  40S ribosomal protein S23-2 (S12)
 gi|7413571|emb|CAB86050.1|  putative protein [Arabidopsis thaliana]
 gi|14532718|gb|AAK64160.1|  unknown protein [Arabidopsis thaliana]
 gi|15450459|gb|AAK96523.1|  AT5g02960/F9G14_270 [Arabidopsis thaliana]
 gi|21281137|gb|AAM44979.1|  unknown protein [Arabidopsis thaliana]
Length=142

 Score = 66.2 bits (160),  Expect(2) = 7e-24
 Identities = 33/33 (100%), Positives = 33/33 (100%), Gaps = 0/33 (0%)
 Frame = +2

Query  92   AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS  190
            AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct  110  AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS  142


 Score = 62.8 bits (151),  Expect(2) = 7e-24
 Identities = 27/28 (96%), Positives = 28/28 (100%), Gaps = 0/28 (0%)
 Frame = +1

Query  10   FVPNDGCLNYIEENDEVLIAGFGRKGHS  93
            FVPNDGCLNYIEENDEVLIAGFGRKGH+
Sbjct  83   FVPNDGCLNYIEENDEVLIAGFGRKGHA  110


>gi|18398604|ref|NP_566351.1|  structural constituent of ribosome [Arabidopsis thaliana]
 gi|27734450|sp|Q9SF35|RS23A_ARATH  40S ribosomal protein S23-1 (S12)
 gi|21536723|gb|AAM61055.1|  putative 40S ribosomal protein S23 [Arabidopsis thaliana]
 gi|98960873|gb|ABF58920.1|  At3g09680 [Arabidopsis thaliana]
Length=142

 Score = 66.2 bits (160),  Expect(2) = 7e-24
 Identities = 33/33 (100%), Positives = 33/33 (100%), Gaps = 0/33 (0%)
 Frame = +2

Query  92   AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS  190
            AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct  110  AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS  142


 Score = 62.8 bits (151),  Expect(2) = 7e-24
 Identities = 27/28 (96%), Positives = 28/28 (100%), Gaps = 0/28 (0%)
 Frame = +1

Query  10   FVPNDGCLNYIEENDEVLIAGFGRKGHS  93
            FVPNDGCLNYIEENDEVLIAGFGRKGH+
Sbjct  83   FVPNDGCLNYIEENDEVLIAGFGRKGHA  110


>gi|6682246|gb|AAF23298.1|AC016661_23  putative 40S ribosomal protein S23 [Arabidopsis thaliana]
Length=136

 Score = 66.2 bits (160),  Expect(2) = 7e-24
 Identities = 33/33 (100%), Positives = 33/33 (100%), Gaps = 0/33 (0%)
 Frame = +2

Query  92   AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS  190
            AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct  104  AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS  136


 Score = 62.8 bits (151),  Expect(2) = 7e-24
 Identities = 27/28 (96%), Positives = 28/28 (100%), Gaps = 0/28 (0%)
 Frame = +1

Query  10   FVPNDGCLNYIEENDEVLIAGFGRKGHS  93
            FVPNDGCLNYIEENDEVLIAGFGRKGH+
Sbjct  77   FVPNDGCLNYIEENDEVLIAGFGRKGHA  104


>gi|75706923|gb|ABA25923.1|  40S ribosomal protein [Picea mariana]
Length=82

 Score = 66.2 bits (160),  Expect(2) = 7e-24
 Identities = 33/33 (100%), Positives = 33/33 (100%), Gaps = 0/33 (0%)
 Frame = +2

Query  92   AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS  190
            AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct  50   AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS  82


 Score = 62.8 bits (151),  Expect(2) = 7e-24
 Identities = 27/28 (96%), Positives = 28/28 (100%), Gaps = 0/28 (0%)
 Frame = +1

Query  10  FVPNDGCLNYIEENDEVLIAGFGRKGHS  93
           FVPNDGCLNYIEENDEVLIAGFGRKGH+
Sbjct  23  FVPNDGCLNYIEENDEVLIAGFGRKGHA  50


>gi|18476504|gb|AAL50317.1|  ultraviolet-B-inducible ribosomal protein [Pisum sativum]
Length=78

 Score = 66.2 bits (160),  Expect(2) = 7e-24
 Identities = 33/33 (100%), Positives = 33/33 (100%), Gaps = 0/33 (0%)
 Frame = +2

Query  92   AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS  190
            AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct  46   AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS  78


 Score = 62.8 bits (151),  Expect(2) = 7e-24
 Identities = 27/28 (96%), Positives = 28/28 (100%), Gaps = 0/28 (0%)
 Frame = +1

Query  10  FVPNDGCLNYIEENDEVLIAGFGRKGHS  93
           FVPNDGCLNYIEENDEVLIAGFGRKGH+
Sbjct  19  FVPNDGCLNYIEENDEVLIAGFGRKGHA  46


>gi|47026867|gb|AAT08659.1|  40S ribosomal protein S23 [Hyacinthus orientalis]
Length=71

 Score = 66.2 bits (160),  Expect(2) = 7e-24
 Identities = 33/33 (100%), Positives = 33/33 (100%), Gaps = 0/33 (0%)
 Frame = +2

Query  92   AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS  190
            AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct  39   AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS  71


 Score = 62.8 bits (151),  Expect(2) = 7e-24
 Identities = 27/28 (96%), Positives = 28/28 (100%), Gaps = 0/28 (0%)
 Frame = +1

Query  10  FVPNDGCLNYIEENDEVLIAGFGRKGHS  93
           FVPNDGCLNYIEENDEVLIAGFGRKGH+
Sbjct  12  FVPNDGCLNYIEENDEVLIAGFGRKGHA  39


>gi|42565432|gb|AAS20987.1|  40S ribosomal protein S23 [Hyacinthus orientalis]
Length=71

 Score = 66.2 bits (160),  Expect(2) = 7e-24
 Identities = 33/33 (100%), Positives = 33/33 (100%), Gaps = 0/33 (0%)
 Frame = +2

Query  92   AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS  190
            AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct  39   AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS  71


 Score = 62.8 bits (151),  Expect(2) = 7e-24
 Identities = 27/28 (96%), Positives = 28/28 (100%), Gaps = 0/28 (0%)
 Frame = +1

Query  10  FVPNDGCLNYIEENDEVLIAGFGRKGHS  93
           FVPNDGCLNYIEENDEVLIAGFGRKGH+
Sbjct  12  FVPNDGCLNYIEENDEVLIAGFGRKGHA  39


>gi|115440881|ref|NP_001044720.1|  Os01g0834500 [Oryza sativa (japonica cultivar-group)]
 gi|115456215|ref|NP_001051708.1|  Os03g0818400 [Oryza sativa (japonica cultivar-group)]
 gi|20805266|dbj|BAB92932.1|  putative 40s ribosomal protein S23 [Oryza sativa (japonica cultivar-group)]
 gi|20805267|dbj|BAB92933.1|  putative 40s ribosomal protein S23 [Oryza sativa (japonica cultivar-group)]
 gi|21671347|dbj|BAC02683.1|  putative 40s ribosomal protein S23 [Oryza sativa (japonica cultivar-group)]
 gi|21671348|dbj|BAC02684.1|  putative 40s ribosomal protein S23 [Oryza sativa (japonica cultivar-group)]
 gi|28876025|gb|AAO60034.1|  40S ribosomal protein S23 [Oryza sativa (japonica cultivar-group)]
 gi|29124115|gb|AAO65856.1|  40S ribosomal protein S23 [Oryza sativa (japonica cultivar-group)]
 gi|108711771|gb|ABF99566.1|  40S ribosomal protein S23, putative, expressed [Oryza sativa 
(japonica cultivar-group)]
 gi|113534251|dbj|BAF06634.1|  Os01g0834500 [Oryza sativa (japonica cultivar-group)]
 gi|113550179|dbj|BAF13622.1|  Os03g0818400 [Oryza sativa (japonica cultivar-group)]
Length=142

 Score = 66.2 bits (160),  Expect(2) = 2e-23
 Identities = 33/33 (100%), Positives = 33/33 (100%), Gaps = 0/33 (0%)
 Frame = +2

Query  92   AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS  190
            AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct  110  AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS  142


 Score = 61.2 bits (147),  Expect(2) = 2e-23
 Identities = 26/28 (92%), Positives = 28/28 (100%), Gaps = 0/28 (0%)
 Frame = +1

Query  10   FVPNDGCLNYIEENDEVLIAGFGRKGHS  93
            FVPNDGCLN+IEENDEVLIAGFGRKGH+
Sbjct  83   FVPNDGCLNFIEENDEVLIAGFGRKGHA  110


>gi|116058273|emb|CAL53462.1|  Mitochondrial/chloroplast ribosomal protein S12 (ISS) [Ostreococcus 
tauri]
Length=142

 Score = 61.2 bits (147),  Expect(2) = 3e-20
 Identities = 30/33 (90%), Positives = 32/33 (96%), Gaps = 0/33 (0%)
 Frame = +2

Query  92   AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS  190
            AVGDIPGVRFKVVKV+GVSL ALF+EKKEKPRS
Sbjct  110  AVGDIPGVRFKVVKVAGVSLNALFREKKEKPRS  142


 Score = 55.8 bits (133),  Expect(2) = 3e-20
 Identities = 23/28 (82%), Positives = 26/28 (92%), Gaps = 0/28 (0%)
 Frame = +1

Query  10   FVPNDGCLNYIEENDEVLIAGFGRKGHS  93
            FVP DGCLN+ +ENDEVLIAGFGRKGH+
Sbjct  83   FVPRDGCLNFTDENDEVLIAGFGRKGHA  110


>gi|23928437|gb|AAN40023.1|  putative 40S ribosomal protein [Zea mays]
Length=309

 Score = 66.2 bits (160),  Expect(2) = 1e-14
 Identities = 33/33 (100%), Positives = 33/33 (100%), Gaps = 0/33 (0%)
 Frame = +2

Query  92   AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS  190
            AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct  237  AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS  269


 Score = 31.6 bits (70),  Expect(2) = 1e-14
 Identities = 13/14 (92%), Positives = 14/14 (100%), Gaps = 0/14 (0%)
 Frame = +1

Query  52   DEVLIAGFGRKGHS  93
            DEVLIAGFGRKGH+
Sbjct  224  DEVLIAGFGRKGHA  237


>gi|115440883|ref|NP_001044721.1|  Os01g0834600 [Oryza sativa (japonica cultivar-group)]
 gi|113534252|dbj|BAF06635.1|  Os01g0834600 [Oryza sativa (japonica cultivar-group)]
Length=46

 Score = 66.2 bits (160),  Expect(2) = 1e-14
 Identities = 33/33 (100%), Positives = 33/33 (100%), Gaps = 0/33 (0%)
 Frame = +2

Query  92   AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS  190
            AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct  14   AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS  46


 Score = 31.6 bits (70),  Expect(2) = 1e-14
 Identities = 13/14 (92%), Positives = 14/14 (100%), Gaps = 0/14 (0%)
 Frame = +1

Query  52  DEVLIAGFGRKGHS  93
           DEVLIAGFGRKGH+
Sbjct  1   DEVLIAGFGRKGHA  14


>gi|21672071|gb|AAM74433.1|AC123594_16  Putative ribosomal potein S23 (S12) [Oryza sativa (japonica cultivar-group)]
 gi|31431420|gb|AAP53201.1|  hypothetical protein LOC_Os10g20910 [Oryza sativa (japonica cultivar-group)]
Length=66

 Score = 51.2 bits (121),  Expect(2) = 8e-09
 Identities = 25/30 (83%), Positives = 28/30 (93%), Gaps = 0/30 (0%)
 Frame = +2

Query  92   AVGDIPGVRFKVVKVSGVSLLALFKEKKEK  181
            A+GDIPGVR KVVKVS VSLLALFKEKK++
Sbjct  35   ALGDIPGVRLKVVKVSAVSLLALFKEKKKQ  64


 Score = 26.9 bits (58),  Expect(2) = 8e-09
 Identities = 11/14 (78%), Positives = 12/14 (85%), Gaps = 0/14 (0%)
 Frame = +1

Query  52  DEVLIAGFGRKGHS  93
           DEVLI GFG KGH+
Sbjct  22  DEVLIVGFGWKGHA  35


>gi|115481628|ref|NP_001064407.1|  Os10g0350400 [Oryza sativa (japonica cultivar-group)]
 gi|21672079|gb|AAM74441.1|AC123594_24  Putative ribosomal protein S23 (S12) [Oryza sativa (japonica 
cultivar-group)]
 gi|78708313|gb|ABB47288.1|  Ribosomal protein S12 containing protein [Oryza sativa (japonica 
cultivar-group)]
 gi|113639016|dbj|BAF26321.1|  Os10g0350400 [Oryza sativa (japonica cultivar-group)]
Length=561

 Score = 35.0 bits (79),  Expect = 0.078
 Identities = 13/21 (61%), Positives = 17/21 (80%), Gaps = 0/21 (0%)
 Frame = +1

Query  10   FVPNDGCLNYIEENDEVLIAG  72
            FVPNDGCLN+I+EN+   + G
Sbjct  154  FVPNDGCLNFIKENEVAYVDG  174


>gi|19920123|gb|AAM08555.1|AC092749_8  Putative 40s ribosomal protein S23 [Oryza sativa]
Length=301

 Score = 33.5 bits (75),  Expect = 0.23
 Identities = 13/17 (76%), Positives = 15/17 (88%), Gaps = 0/17 (0%)
 Frame = +1

Query  10   FVPNDGCLNYIEENDEV  60
            FVPNDGCLN+I+EN  V
Sbjct  154  FVPNDGCLNFIKENGPV  170

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 223
Number of extensions: 0
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 320
Length of database: 101054579
Length adjustment: 75
Effective length of query: 245
Effective length of database: 79803404
Effective search space: 2473905524
Effective search space used: 2473905524
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 61 (28.1 bits)

Distribution of 34 Blast Hits on the Query Sequence