Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168944848-4342-99717664651.BLASTQ4 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig311 Length=921
Score E Sequences producing significant alignments: (Bits) Value gi|27529824|dbj|BAC53927.1| hypothetical protein [Nicotiana taba 86.3 4e-32 gi|79330664|ref|NP_001032061.1| RD29B (RESPONSIVE TO DESSICATION 80.1 1e-14 gi|22327778|ref|NP_200043.2| RD29B (RESPONSIVE TO DESSICATION... 80.1 1e-14 gi|16388|emb|CAA47902.1| lti65 [Arabidopsis thaliana] 77.8 6e-14 gi|10177396|dbj|BAB10527.1| low-temperature-induced 65 kD protei 77.8 6e-14 gi|5802248|gb|AAD51627.1| seed maturation protein PM39 [Glycine 70.1 1e-13 gi|265975|gb|AAB25482.1| RD29B=responsive-to-dessication prot... 76.3 2e-13 gi|303503|dbj|BAA02375.1| RD29B [Arabidopsis thaliana] 76.3 2e-13 gi|2980792|emb|CAA18168.1| putative protein [Arabidopsis thalian 68.9 3e-13 gi|7269408|emb|CAB81368.1| putative protein [Arabidopsis thalian 68.9 3e-13 gi|22328929|ref|NP_194288.2| unknown protein [Arabidopsis tha... 68.9 3e-13 gi|2644964|emb|CAA05780.1| CDet11-24 [Craterostigma plantagineum 58.9 3e-08 gi|265974|gb|AAB25481.1| RD29A=responsive-to-dessication prot... 53.5 7e-07 gi|404668|gb|AAA32776.1| cor78 50.4 5e-06 gi|15242967|ref|NP_200044.1| COR78 (COLD REGULATED 78) [Arabi... 50.4 5e-06 gi|15450771|gb|AAK96657.1| low-temperature-induced protein 78 [A 50.4 5e-06 gi|2654206|gb|AAC49998.1| cold acclimation protein [Spinacia ... 48.1 5e-05 gi|62320388|dbj|BAD94805.1| low-temperature-induced protein 78 [ 41.6 0.005 gi|92868227|gb|ABE78298.1| conserved hypothetical protein [Medic 40.0 0.013 gi|30685162|ref|NP_188532.2| protein binding / structural con... 29.3 0.067 gi|20259488|gb|AAM13864.1| unknown protein [Arabidopsis thaliana 29.3 0.068 gi|115450973|ref|NP_001049087.1| Os03g0168100 [Oryza sativa (... 36.2 0.19 gi|9758395|dbj|BAB08882.1| unnamed protein product [Arabidopsis 35.8 0.25 gi|228939|prf||1814452D Hyp-rich glycoprotein 27.7 0.54 gi|4996369|dbj|BAA78427.1| polyprotein [Arabidopsis thaliana] 34.3 0.72 gi|110289394|gb|AAP54582.2| Plus-3 domain containing protein,... 33.9 0.94 gi|5541684|emb|CAB51190.1| serine/threonine kinase-like protein 30.0 2.4 gi|79436760|ref|NP_190259.2| unknown protein [Arabidopsis tha... 30.0 2.4 gi|92891083|gb|ABE90625.1| This gene is isolated by means of ... 32.3 2.7 gi|92868651|gb|ABE78650.1| This gene is isolated by means of ... 32.3 2.7 gi|3924609|gb|AAC79110.1| putative polyprotein of LTR transpo... 32.3 2.7 gi|42572233|ref|NP_974211.1| unknown protein [Arabidopsis thalia 32.3 2.7 gi|15237230|ref|NP_197706.1| HUA2 (ENHANCER OF AG-4 2) [Arabi... 32.3 2.7 gi|4996367|dbj|BAA78426.1| polyprotein [Arabidopsis thaliana] 32.3 2.7 gi|4996363|dbj|BAA78424.1| polyprotein [Arabidopsis thaliana] 32.3 2.7 gi|15232924|ref|NP_186903.1| unknown protein [Arabidopsis tha... 32.3 2.7 gi|6983787|emb|CAB75404.1| gamma-gliadin [Triticum aestivum] 32.3 2.7 gi|1345516|emb|CAA40826.1| lti140 [Arabidopsis thaliana] 26.9 3.1 gi|92867401|gb|ABE77711.1| conserved hypothetical protein [Medic 32.0 3.6 gi|30017586|gb|AAP13008.1| putative protein kinase [Oryza sat... 31.6 4.7 gi|15231736|ref|NP_190872.1| unknown protein [Arabidopsis tha... 31.6 4.7 gi|55792579|gb|AAV65383.1| plastid geranylgeranyl diphosphate... 31.6 4.7 gi|15240391|ref|NP_201001.1| cysteine-type endopeptidase/ ubi... 31.6 4.7 gi|15228865|ref|NP_188922.1| AT-HSFA6B; DNA binding / transcr... 31.6 4.7 gi|27804451|gb|AAO22522.1| HUA2 [Brassica rapa subsp. pekinensis 31.2 6.1 gi|115438665|ref|NP_001043612.1| Os01g0622600 [Oryza sativa (... 31.2 6.1 gi|15231795|ref|NP_190901.1| copper ion binding / electron tr... 31.2 6.1 gi|38605837|emb|CAE02917.3| OSJNBb0108J11.9 [Oryza sativa (japon 26.2 6.6 gi|115474247|ref|NP_001060722.1| Os07g0692500 [Oryza sativa (... 30.8 8.0 gi|92891204|gb|ABE90722.1| This gene is isolated by means of ... 30.8 8.0 gi|92889755|gb|ABE90015.1| RNA-directed DNA polymerase (Rever... 30.8 8.0 gi|92884236|gb|ABE87256.1| IMP dehydrogenase/GMP reductase [Medi 30.8 8.0 gi|33146887|dbj|BAC79885.1| unknown protein [Oryza sativa (japon 30.8 8.0
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 625 Number of extensions: 8 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 921 Length of database: 101054579 Length adjustment: 113 Effective length of query: 808 Effective length of database: 69036142 Effective search space: 13393011548 Effective search space used: 13393011548 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 67 (30.4 bits)