RID=1168945444-17574-24448938912.BLASTQ1, Contig331

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168945444-17574-24448938912.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig331
Length=453

Distribution of 18 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|1711512|sp|P49972|SR542_LYCES  Signal recognition particle ...  73.9    2e-13 
gi|1711509|sp|P49971|SR541_LYCES  Signal recognition particle ...  71.2    1e-12
gi|515681|gb|AAA66200.1|  signal recognition particle 54 kDa subu  70.5    2e-12
gi|18402407|ref|NP_564535.1|  7S RNA binding / GTP binding / R...  70.5    2e-12 
gi|25294409|pir||G96526  hypothetical protein F27K7.8 [importe...  70.5    2e-12
gi|92867758|gb|ABE77897.1|  GTP-binding signal recognition par...  65.1    1e-10
gi|115440231|ref|NP_001044395.1|  Os01g0772800 [Oryza sativa (...  64.7    1e-10 
gi|15239909|ref|NP_199761.1|  7S RNA binding / GTP binding / R...  59.7    4e-09 
gi|1711510|sp|P49966|SR542_ARATH  Signal recognition particle ...  59.7    4e-09
gi|18394225|ref|NP_563970.1|  ATHSRP54A; 7S RNA binding / GTP ...  58.9    7e-09 
gi|1711508|sp|P49968|SR541_HORVU  Signal recognition particle ...  53.1    4e-07
gi|1711511|sp|P49969|SR542_HORVU  Signal recognition particle ...  53.1    4e-07
gi|1711514|sp|P49970|SR543_HORVU  Signal recognition particle ...  43.9    2e-04
gi|116059951|emb|CAL56010.1|  Signal recognition particle, sub...  39.7    0.004
gi|115464807|ref|NP_001056003.1|  Os05g0509500 [Oryza sativa (...  35.0    0.11  
gi|116057002|emb|CAL51429.1|  FOG: Ankyrin repeat (ISS) [Ostreoco  29.6    4.6  
gi|91806534|gb|ABE65994.1|  zinc finger family protein [Arabidops  29.3    6.0   
gi|15230710|ref|NP_190134.1|  ubiquitin-protein ligase/ zinc i...  29.3    6.0

Alignments

 

>gi|1711512|sp|P49972|SR542_LYCES  Signal recognition particle 54 kDa protein 2 (SRP54)
 gi|556902|emb|CAA84288.1|  54-kD signal recognition particle (SRP) specific protein [Solanum 
lycopersicum]
Length=499

 Score = 73.9 bits (180),  Expect = 2e-13
 Identities = 35/35 (100%), Positives = 35/35 (100%), Gaps = 0/35 (0%)
 Frame = +1

Query  34   NAQHMSKVLPPQMLKQIGGMGGLQNLMKQMGSAKD  138
            NAQHMSKVLPPQMLKQIGGMGGLQNLMKQMGSAKD
Sbjct  451  NAQHMSKVLPPQMLKQIGGMGGLQNLMKQMGSAKD  485


>gi|1711509|sp|P49971|SR541_LYCES  Signal recognition particle 54 kDa protein 1 (SRP54)
 gi|556900|emb|CAA84275.1|  54-kD signal recognition particle (SRP) specific protein [Solanum 
lycopersicum]
Length=496

 Score = 71.2 bits (173),  Expect = 1e-12
 Identities = 34/35 (97%), Positives = 35/35 (100%), Gaps = 0/35 (0%)
 Frame = +1

Query  34   NAQHMSKVLPPQMLKQIGGMGGLQNLMKQMGSAKD  138
            NAQ+MSKVLPPQMLKQIGGMGGLQNLMKQMGSAKD
Sbjct  451  NAQNMSKVLPPQMLKQIGGMGGLQNLMKQMGSAKD  485


>gi|515681|gb|AAA66200.1|  signal recognition particle 54 kDa subunit
Length=495

 Score = 70.5 bits (171),  Expect = 2e-12
 Identities = 33/35 (94%), Positives = 34/35 (97%), Gaps = 0/35 (0%)
 Frame = +1

Query  34   NAQHMSKVLPPQMLKQIGGMGGLQNLMKQMGSAKD  138
            NAQHMSKVLPPQMLKQIGGMGGLQ+LMKQMGS KD
Sbjct  451  NAQHMSKVLPPQMLKQIGGMGGLQSLMKQMGSGKD  485


>gi|18402407|ref|NP_564535.1|  7S RNA binding / GTP binding / RNA binding / mRNA binding / nucleoside-triphosphatase/ 
nucleotide binding [Arabidopsis thaliana]
 gi|21542461|sp|P49967|SR543_ARATH  Signal recognition particle 54 kDa protein 3 (SRP54)
 gi|17386102|gb|AAL38597.1|AF446864_1  At1g48900/F27K7_8 [Arabidopsis thaliana]
 gi|15450461|gb|AAK96524.1|  At1g48900/F27K7_8 [Arabidopsis thaliana]
 gi|15810010|gb|AAL06932.1|  At1g48900/F27K7_8 [Arabidopsis thaliana]
Length=495

 Score = 70.5 bits (171),  Expect = 2e-12
 Identities = 33/35 (94%), Positives = 34/35 (97%), Gaps = 0/35 (0%)
 Frame = +1

Query  34   NAQHMSKVLPPQMLKQIGGMGGLQNLMKQMGSAKD  138
            NAQHMSKVLPPQMLKQIGGMGGLQ+LMKQMGS KD
Sbjct  451  NAQHMSKVLPPQMLKQIGGMGGLQSLMKQMGSGKD  485


>gi|25294409|pir||G96526  hypothetical protein F27K7.8 [imported] - Arabidopsis thaliana
 gi|11094805|gb|AAG29734.1|AC084414_2  signal recognition particle 54 kDa protein 2 (SRP54), putative 
[Arabidopsis thaliana]
Length=522

 Score = 70.5 bits (171),  Expect = 2e-12
 Identities = 33/35 (94%), Positives = 34/35 (97%), Gaps = 0/35 (0%)
 Frame = +1

Query  34   NAQHMSKVLPPQMLKQIGGMGGLQNLMKQMGSAKD  138
            NAQHMSKVLPPQMLKQIGGMGGLQ+LMKQMGS KD
Sbjct  478  NAQHMSKVLPPQMLKQIGGMGGLQSLMKQMGSGKD  512


>gi|92867758|gb|ABE77897.1|  GTP-binding signal recognition particle SRP54, G-domain [Medicago 
truncatula]
 gi|92874832|gb|ABE83032.1|  GTP-binding signal recognition particle SRP54, G-domain [Medicago 
truncatula]
Length=496

 Score = 65.1 bits (157),  Expect = 1e-10
 Identities = 30/35 (85%), Positives = 32/35 (91%), Gaps = 0/35 (0%)
 Frame = +1

Query  34   NAQHMSKVLPPQMLKQIGGMGGLQNLMKQMGSAKD  138
            NA HMSK+LPPQMLKQIGGMGGLQ+LMK MGS KD
Sbjct  451  NATHMSKILPPQMLKQIGGMGGLQSLMKSMGSNKD  485


>gi|115440231|ref|NP_001044395.1|  Os01g0772800 [Oryza sativa (japonica cultivar-group)]
 gi|20160917|dbj|BAB89854.1|  putative signal recognition particle 54kD protein [Oryza sativa 
(japonica cultivar-group)]
 gi|21743252|dbj|BAC03250.1|  putative signal recognition particle 54kD protein [Oryza sativa 
(japonica cultivar-group)]
 gi|32879776|dbj|BAC79360.1|  signal recognition particle 54kDa subunit [Oryza sativa (japonica 
cultivar-group)]
 gi|113533926|dbj|BAF06309.1|  Os01g0772800 [Oryza sativa (japonica cultivar-group)]
Length=496

 Score = 64.7 bits (156),  Expect = 1e-10
 Identities = 30/32 (93%), Positives = 31/32 (96%), Gaps = 0/32 (0%)
 Frame = +1

Query  34   NAQHMSKVLPPQMLKQIGGMGGLQNLMKQMGS  129
            N QHMSKVLPPQMLKQIGGMGGLQ+LMKQMGS
Sbjct  451  NVQHMSKVLPPQMLKQIGGMGGLQSLMKQMGS  482


>gi|15239909|ref|NP_199761.1|  7S RNA binding / GTP binding / RNA binding / mRNA binding [Arabidopsis 
thaliana]
 gi|10177616|dbj|BAB10763.1|  SRP54 (signal recognition particle 54 KDa) protein [Arabidopsis 
thaliana]
Length=497

 Score = 59.7 bits (143),  Expect = 4e-09
 Identities = 28/35 (80%), Positives = 31/35 (88%), Gaps = 0/35 (0%)
 Frame = +1

Query  34   NAQHMSKVLPPQMLKQIGGMGGLQNLMKQMGSAKD  138
            N+Q +SKVLP QMLKQIGGM GLQ+LMKQMGS KD
Sbjct  453  NSQQLSKVLPAQMLKQIGGMSGLQSLMKQMGSGKD  487


>gi|1711510|sp|P49966|SR542_ARATH  Signal recognition particle 54 kDa protein 2 (SRP54)
 gi|515679|gb|AAA66199.1|  signal recognition particle 54 kDa subunit
Length=495

 Score = 59.7 bits (143),  Expect = 4e-09
 Identities = 28/35 (80%), Positives = 31/35 (88%), Gaps = 0/35 (0%)
 Frame = +1

Query  34   NAQHMSKVLPPQMLKQIGGMGGLQNLMKQMGSAKD  138
            N+Q +SKVLP QMLKQIGGM GLQ+LMKQMGS KD
Sbjct  451  NSQQLSKVLPAQMLKQIGGMSGLQSLMKQMGSGKD  485


>gi|18394225|ref|NP_563970.1|  ATHSRP54A; 7S RNA binding / GTP binding / RNA binding / mRNA 
binding / nucleoside-triphosphatase/ nucleotide binding [Arabidopsis 
thaliana]
 gi|586036|sp|P37106|SR541_ARATH  Signal recognition particle 54 kDa protein 1 (SRP54)
 gi|5103829|gb|AAD39659.1|AC007591_24  Identical to gb|L19997 signal recognition particle 54 kDa subunit 
(Srp54-1) from Arabidopsis thaliana.  ESTs gb|T88590 and 
gb|T20603 come from this gene
 gi|12745001|gb|AAK06880.1|AF344329_1  unknown protein [Arabidopsis thaliana]
 gi|304111|gb|AAA19728.1|  signal recognition particle 54 kDa subunit
 gi|21592315|gb|AAM64266.1|  signal recognition particle 54 kDa protein 2 (SRP54), putative 
[Arabidopsis thaliana]
 gi|62320715|dbj|BAD95382.1|  putative signal recognition particle 54 kDa subunit [Arabidopsis 
thaliana]
Length=479

 Score = 58.9 bits (141),  Expect = 7e-09
 Identities = 27/31 (87%), Positives = 30/31 (96%), Gaps = 0/31 (0%)
 Frame = +1

Query  46   MSKVLPPQMLKQIGGMGGLQNLMKQMGSAKD  138
            MSKV+PPQMLKQ+GGM GLQ+LMKQMGSAKD
Sbjct  439  MSKVIPPQMLKQMGGMSGLQSLMKQMGSAKD  469


>gi|1711508|sp|P49968|SR541_HORVU  Signal recognition particle 54 kDa protein 1 (SRP54)
 gi|1020000|gb|AAA79354.1|  signal recognition particle 54 kDa subunit [Hordeum vulgare]
Length=497

 Score = 53.1 bits (126),  Expect = 4e-07
 Identities = 24/31 (77%), Positives = 27/31 (87%), Gaps = 0/31 (0%)
 Frame = +1

Query  34   NAQHMSKVLPPQMLKQIGGMGGLQNLMKQMG  126
            N Q M+K LPPQ+LKQ+GGMGGLQ LMKQMG
Sbjct  451  NIQQMTKALPPQVLKQMGGMGGLQALMKQMG  481


>gi|1711511|sp|P49969|SR542_HORVU  Signal recognition particle 54 kDa protein 2 (SRP54)
 gi|1020002|gb|AAA79355.1|  signal recognition particle 54 kDa subunit [Hordeum vulgare]
Length=497

 Score = 53.1 bits (126),  Expect = 4e-07
 Identities = 24/31 (77%), Positives = 27/31 (87%), Gaps = 0/31 (0%)
 Frame = +1

Query  34   NAQHMSKVLPPQMLKQIGGMGGLQNLMKQMG  126
            N Q M+K LPPQ+LKQ+GGMGGLQ LMKQMG
Sbjct  451  NIQQMTKALPPQVLKQMGGMGGLQALMKQMG  481


>gi|1711514|sp|P49970|SR543_HORVU  Signal recognition particle 54 kDa protein 3 (SRP54)
 gi|1020004|gb|AAA79356.1|  signal recognition particle 54 kDa subunit [Hordeum vulgare]
Length=493

 Score = 43.9 bits (102),  Expect = 2e-04
 Identities = 18/33 (54%), Positives = 26/33 (78%), Gaps = 0/33 (0%)
 Frame = +1

Query  40   QHMSKVLPPQMLKQIGGMGGLQNLMKQMGSAKD  138
            Q M KV+PPQ+++Q+GG  GL+ L+KQ+G  KD
Sbjct  449  QKMLKVMPPQVVQQMGGKSGLEALLKQLGGGKD  481


>gi|116059951|emb|CAL56010.1|  Signal recognition particle, subunit Srp54 (ISS) [Ostreococcus 
tauri]
Length=559

 Score = 39.7 bits (91),  Expect = 0.004
 Identities = 16/25 (64%), Positives = 20/25 (80%), Gaps = 0/25 (0%)
 Frame = +1

Query  46   MSKVLPPQMLKQIGGMGGLQNLMKQ  120
            M+  LPP ML+ +GG GGLQN+MKQ
Sbjct  516  MANALPPDMLRMMGGAGGLQNMMKQ  540


>gi|115464807|ref|NP_001056003.1|  Os05g0509500 [Oryza sativa (japonica cultivar-group)]
 gi|33235565|dbj|BAC80140.1|  signal recognition particle 54kDa subunit [Oryza sativa (japonica 
cultivar-group)]
 gi|48475202|gb|AAT44271.1|  putative signal recognition particle  54 KD protein (SRP54) [Oryza 
sativa (japonica cultivar-group)]
 gi|113579554|dbj|BAF17917.1|  Os05g0509500 [Oryza sativa (japonica cultivar-group)]
Length=483

 Score = 35.0 bits (79),  Expect = 0.11
 Identities = 14/27 (51%), Positives = 22/27 (81%), Gaps = 0/27 (0%)
 Frame = +1

Query  46   MSKVLPPQMLKQIGGMGGLQNLMKQMG  126
            ++ ++P Q+L QIGG+  LQ++MKQMG
Sbjct  454  INNLIPKQLLNQIGGVNPLQSVMKQMG  480


>gi|116057002|emb|CAL51429.1|  FOG: Ankyrin repeat (ISS) [Ostreococcus tauri]
Length=300

 Score = 29.6 bits (65),  Expect = 4.6
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 0/29 (0%)
 Frame = +3

Query  39   AAHEQGSPSTDAKADRWHGWLAELDEANG  125
            A+    SP T   ++RW GW+ E  E +G
Sbjct  11   ASTASSSPPTPTPSERWRGWMTEAIERDG  39


>gi|91806534|gb|ABE65994.1|  zinc finger family protein [Arabidopsis thaliana]
Length=382

 Score = 29.3 bits (64),  Expect = 6.0
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +2

Query  203  KFTWLLPLDSLVKTXDICIPRPQXSPCANC  292
            KF + L  ++LV   +I IPRPQ   C NC
Sbjct  132  KFVYKLAKETLVS--NISIPRPQKKTCGNC  159


>gi|15230710|ref|NP_190134.1|  ubiquitin-protein ligase/ zinc ion binding [Arabidopsis thaliana]
 gi|6996251|emb|CAB75477.1|  putative protein [Arabidopsis thaliana]
Length=373

 Score = 29.3 bits (64),  Expect = 6.0
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +2

Query  203  KFTWLLPLDSLVKTXDICIPRPQXSPCANC  292
            KF + L  ++LV   +I IPRPQ   C NC
Sbjct  132  KFVYKLAKETLVS--NISIPRPQKKTCGNC  159

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 319
Number of extensions: 4
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 453
Length of database: 101054579
Length adjustment: 103
Effective length of query: 350
Effective length of database: 71869632
Effective search space: 3449742336
Effective search space used: 3449742336
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 62 (28.5 bits)