Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168945609-30268-23213304355.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig339 Length=364
Score E Sequences producing significant alignments: (Bits) Value gi|68164862|ref|YP_247658.1| hypothetical protein CsCp113 [Cu... 33.1 0.30 gi|74027156|gb|AAZ94706.1| hypothetical protein [Cucumis sativus 33.1 0.30 gi|115443735|ref|NP_001045647.1| Os02g0110000 [Oryza sativa (... 32.7 0.39 gi|92899172|gb|ABE94565.1| hypothetical protein MtrDRAFT_AC12... 31.2 1.1 gi|4033606|dbj|BAA35135.1| Extensin [Adiantum capillus-veneris] 31.2 1.1 gi|115467008|ref|NP_001057103.1| Os06g0208300 [Oryza sativa (... 30.4 1.9 gi|115439231|ref|NP_001043895.1| Os01g0685200 [Oryza sativa (... 30.0 2.5 gi|5734709|gb|AAD49974.1|AC008075_7 Contains PF|00069 Eukaryo... 29.6 3.3 gi|115484277|ref|NP_001065800.1| Os11g0157300 [Oryza sativa (... 29.6 3.3 gi|115438124|ref|NP_001043463.1| Os01g0594300 [Oryza sativa (... 29.3 4.3 gi|20521298|dbj|BAB91812.1| extensin precursor-like [Oryza sa... 29.3 4.3 gi|104295004|gb|ABF72019.1| hypothetical protein MA4_82I11.20 [M 28.9 5.7 gi|20146373|dbj|BAB89154.1| hypothetical protein [Oryza sativa ( 28.9 5.7 gi|535586|gb|AAB41815.1| proline rich protein [Medicago sativa] 28.9 5.7 gi|75336811|sp|Q9S740|AGP19_ARATH Lysine-rich arabinogalactan... 28.9 5.7 gi|77555668|gb|ABA98464.1| transposon protein, putative, CACT... 28.9 5.7 gi|22330504|ref|NP_177041.2| AGP19/ATAGP19 [Arabidopsis thaliana 28.9 5.7 gi|22328703|ref|NP_680707.1| unknown protein [Arabidopsis thalia 28.9 5.7 gi|26453042|dbj|BAC43597.1| unknown protein [Arabidopsis thalian 28.9 5.7 gi|116309602|emb|CAH66658.1| OSIGBa0092J07.4 [Oryza sativa (indi 28.5 7.4 gi|115444209|ref|NP_001045884.1| Os02g0147500 [Oryza sativa (... 28.5 7.4 gi|37806399|dbj|BAC99937.1| hypothetical protein [Oryza sativa ( 28.5 7.4 gi|38344512|emb|CAE02586.2| OSJNBa0016N04.5 [Oryza sativa (japon 28.5 7.4 gi|82780756|gb|ABB90547.1| putative lipid transfer protein [Trit 28.1 9.7 gi|115486321|ref|NP_001068304.1| Os11g0623700 [Oryza sativa (... 28.1 9.7 gi|108864459|gb|ABG22508.1| retrotransposon protein, putative... 28.1 9.7 gi|62733331|gb|AAX95448.1| Ulp1 protease family, C-terminal c... 28.1 9.7 gi|77553800|gb|ABA96596.1| transposon protein, putative, CACT... 28.1 9.7 gi|77552460|gb|ABA95257.1| transposon protein, putative, CACT... 28.1 9.7 gi|15238432|ref|NP_198369.1| structural constituent of cell wall 28.1 9.7 gi|53791985|dbj|BAD54438.1| hypothetical protein [Oryza sativa ( 28.1 9.7 gi|25553611|dbj|BAC24871.1| putative auxin response factor 6a... 28.1 9.7 gi|600118|emb|CAA84230.1| extensin-like protein [Zea mays] >g... 28.1 9.7 gi|8978351|dbj|BAA98204.1| unnamed protein product [Arabidopsis 28.1 9.7 gi|1015937|emb|CAA62943.1| extensin class 1 protein [Vigna ungui 28.1 9.7
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 293 Number of extensions: 8 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 364 Length of database: 101054579 Length adjustment: 88 Effective length of query: 276 Effective length of database: 76119867 Effective search space: 2511955611 Effective search space used: 2511955611 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 61 (28.1 bits)