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BLASTX 2.2.15 [Oct-15-2006] 
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman 
(1997), "Gapped BLAST and PSI-BLAST: a new generation of 
protein database search programs", Nucleic Acids Res. 25:3389-3402.

RID: 1169013832-32623-175768476767.BLASTQ4


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
           4,460,989 sequences; 1,533,424,333 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs
Taxonomy reports

Query=  Contig360
Length=449

Distribution of 28 Blast Hits on the Query Sequence


                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|15228141|ref|NP_178520.1|  structural constituent of riboso...   204    1e-52 UniGene infoGene info
gi|25295117|pir||B84466  40S ribosomal protein S17 [imported] - A   201    8e-52
gi|40287504|gb|AAR83866.1|  40S ribosomal protein S17 [Capsicum a   199    2e-51
gi|18395997|ref|NP_565320.1|  structural constituent of riboso...   199    2e-51 UniGene infoGene info
gi|76573345|gb|ABA46777.1|  40S ribosomal protein S17-like protei   199    3e-51 UniGene info
gi|15238332|ref|NP_196100.1|  structural constituent of riboso...   199    3e-51 UniGene infoGene info
gi|15228335|ref|NP_187672.1|  structural constituent of riboso...   199    3e-51 UniGene infoGene info
gi|20141760|sp|P49215|RS17_LYCES  40S ribosomal protein S17 >g...   199    3e-51 Gene info
gi|21593447|gb|AAM65414.1|  40S ribosomal protein S17-like [Arabi   196    2e-50 UniGene info
gi|115450215|ref|NP_001048708.1|  Os03g0109500 [Oryza sativa (...   192    3e-49 Gene info
gi|115481984|ref|NP_001064585.1|  Os10g0411800 [Oryza sativa (...   184    1e-46 Gene info
gi|116057495|emb|CAL51922.1|  40S ribosomal protein S17 (ISS) [Os   179    3e-45
gi|603570|emb|CAA58444.1|  ribosomal protein S17 [Solanum lycoper  90.1    3e-18 UniGene info
gi|18411885|ref|NP_565175.1|  RNA binding / nucleic acid bindi...  31.6    1.2   UniGene infoGene info
gi|8052542|gb|AAF71806.1|AC013430_15  F3F9.20 [Arabidopsis thalia  31.6    1.2  
gi|42572157|ref|NP_974169.1|  RNA binding / nucleic acid bindi...  31.6    1.2   UniGene infoGene info
gi|92886492|gb|ABE88359.1|  Lipoxygenase [Medicago truncatula]     30.0    3.3  
gi|77554335|gb|ABA97131.1|  retrotransposon protein, putative,...  30.0    3.3  
gi|108711657|gb|ABF99452.1|  Calreticulin family protein, expr...  29.6    4.4  
gi|115452921|ref|NP_001050061.1|  Os03g0339700 [Oryza sativa (...  29.6    4.4   Gene info
gi|30103011|gb|AAP21424.1|  putative pentatricopeptide repeat ...  29.6    4.4   Gene info
gi|3297822|emb|CAA19880.1|  putative protein [Arabidopsis thal...  29.3    5.7  
gi|115477116|ref|NP_001062154.1|  Os08g0500200 [Oryza sativa (...  29.3    5.7   Gene info
gi|19071644|gb|AAL84311.1|AC073556_28  putative DNA-binding pr...  28.9    7.5   Gene info
gi|4678316|emb|CAB41127.1|  putative protein [Arabidopsis thalian  28.9    7.5  
gi|41053170|dbj|BAD08112.1|  hypothetical protein [Oryza sativa (  28.9    7.5   Gene info
gi|42565712|ref|NP_190395.3|  unknown protein [Arabidopsis tha...  28.9    7.5   UniGene infoGene info
gi|52076255|dbj|BAD45023.1|  hypothetical protein [Oryza sativa (  28.5    9.7
Alignments

>gi|15228141|ref|NP_178520.1| UniGene infoGene info structural constituent of ribosome [Arabidopsis thaliana]
 gi|19884102|sp|P49205|RS17A_ARATH Gene info 40S ribosomal protein S17-1
 gi|16930429|gb|AAL31900.1|AF419568_1 UniGene infoGene info At2g04390/T1O3.20 [Arabidopsis thaliana]
 gi|4587611|gb|AAD25839.1| Gene info 40S ribosomal protein S17 [Arabidopsis thaliana]
 gi|19310511|gb|AAL84989.1| UniGene infoGene info At2g04390/T1O3.20 [Arabidopsis thaliana]
 gi|21595522|gb|AAM66109.1| UniGene infoGene info 40S ribosomal protein S17 [Arabidopsis thaliana]
Length=141

 Score =  204 bits (518),  Expect = 1e-52
 Identities = 108/131 (82%), Positives = 115/131 (87%), Gaps = 3/131 (2%)
 Frame = +3

Query  24   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKIIEEVAIIPSKRLRNKIAGFSTHLMKR  203
            MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKI+EEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct  1    MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR  60

Query  204  IQKGPVRGISLKLQEEERERRMDFVPDESAIKVDQIEVDKETLDMPFKFLGWLIFLGLVR  383
            IQKGPVRGISLKLQEEERERRMDFVPDESAIK D+I+VDKETL+M    LG    LG+  
Sbjct  61   IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEM-LASLGMSDTLGISA  119

Query  384  VDP--GAGPVP  410
            VDP     P+P
Sbjct  120  VDPQQAMAPIP  130


>gi|25295117|pir||B84466  40S ribosomal protein S17 [imported] - Arabidopsis thaliana
Length=179

 Score =  201 bits (511),  Expect = 8e-52
 Identities = 106/134 (79%), Positives = 114/134 (85%), Gaps = 1/134 (0%)
 Frame = +3

Query  9    PKETTMGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKIIEEVAIIPSKRLRNKIAGFST  188
            P  + MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKI+EEVAIIPSKRLRNKIAGFST
Sbjct  35   PSLSPMGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFST  94

Query  189  HLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKVDQIEVDKETLDMPFKFLGWLIF  368
            HLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIK D+I+VDKETL+M    LG    
Sbjct  95   HLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEM-LASLGMSDT  153

Query  369  LGLVRVDPGAGPVP  410
             G+  V+P     P
Sbjct  154  SGISAVEPQQAMAP  167


>gi|40287504|gb|AAR83866.1|  40S ribosomal protein S17 [Capsicum annuum]
Length=145

 Score =  199 bits (507),  Expect = 2e-51
 Identities = 105/120 (87%), Positives = 109/120 (90%), Gaps = 1/120 (0%)
 Frame = +3

Query  24   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKIIEEVAIIPSKRLRNKIAGFSTHLMKR  203
            MGRVRTKTVKKSSRQVIERYYS+MTLDFHTNKKI+EEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct  1    MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR  60

Query  204  IQKGPVRGISLKLQEEERERRMDFVPDESAIKVDQIEVDKETLDMPFKFLGWLIFLGLVR  383
            IQKGPVRGISLKLQEEERERRMDFVPDESAIK D IEVDKETLDM    LG     G+V+
Sbjct  61   IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDM-LSALGMAELPGVVK  119


>gi|18395997|ref|NP_565320.1| UniGene infoGene info structural constituent of ribosome [Arabidopsis thaliana]
 gi|79321790|ref|NP_001031325.1| UniGene infoGene info structural constituent of ribosome [Arabidopsis thaliana]
 gi|20139841|sp|Q9SJ36|RS17B_ARATH Gene info 40S ribosomal protein S17-2
 gi|13878099|gb|AAK44127.1|AF370312_1 UniGene infoGene info putative 40S ribosomal protein S17 [Arabidopsis thaliana]
 gi|17104767|gb|AAL34272.1| UniGene infoGene info putative 40S ribosomal protein S17 [Arabidopsis thaliana]
 gi|20198002|gb|AAD29060.2| Gene info 40S ribosomal protein S17 [Arabidopsis thaliana]
 gi|25083446|gb|AAN72079.1| UniGene infoGene info 40S ribosomal protein S17 [Arabidopsis thaliana]
 gi|30102846|gb|AAP21341.1| UniGene infoGene info At2g05220 [Arabidopsis thaliana]
Length=140

 Score =  199 bits (507),  Expect = 2e-51
 Identities = 105/129 (81%), Positives = 112/129 (86%), Gaps = 1/129 (0%)
 Frame = +3

Query  24   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKIIEEVAIIPSKRLRNKIAGFSTHLMKR  203
            MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKI+EEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct  1    MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR  60

Query  204  IQKGPVRGISLKLQEEERERRMDFVPDESAIKVDQIEVDKETLDMPFKFLGWLIFLGLVR  383
            IQKGPVRGISLKLQEEERERRMDFVPDESAIK D+I+VDKETL+M    LG     G+  
Sbjct  61   IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEM-LASLGMSDTSGISA  119

Query  384  VDPGAGPVP  410
            V+P     P
Sbjct  120  VEPQQAMAP  128


>gi|76573345|gb|ABA46777.1| UniGene info 40S ribosomal protein S17-like protein [Solanum tuberosum]
Length=144

 Score =  199 bits (506),  Expect = 3e-51
 Identities = 101/105 (96%), Positives = 103/105 (98%), Gaps = 0/105 (0%)
 Frame = +3

Query  24   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKIIEEVAIIPSKRLRNKIAGFSTHLMKR  203
            MGRVRTKTVKKSSRQVIERYYS+MTLDFHTNKKI+EEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct  1    MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR  60

Query  204  IQKGPVRGISLKLQEEERERRMDFVPDESAIKVDQIEVDKETLDM  338
            IQKGPVRGISLKLQEEERERRMDFVPDESAIK D IEVDKETLDM
Sbjct  61   IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDM  105


>gi|15238332|ref|NP_196100.1| UniGene infoGene info structural constituent of ribosome [Arabidopsis thaliana]
 gi|30680641|ref|NP_850765.1| UniGene infoGene info structural constituent of ribosome [Arabidopsis thaliana]
 gi|79326979|ref|NP_001031834.1| UniGene infoGene info structural constituent of ribosome [Arabidopsis thaliana]
 gi|79326995|ref|NP_001031835.1| UniGene infoGene info structural constituent of ribosome [Arabidopsis thaliana]
 gi|20139799|sp|Q9LZ17|RS17D_ARATH Gene info 40S ribosomal protein S17-4
 gi|13605724|gb|AAK32855.1|AF361843_1 UniGene infoGene info AT5g04800/MUK11_12 [Arabidopsis thaliana]
 gi|7413542|emb|CAB86022.1| Gene info 40S ribosomal protein S17-like [Arabidopsis thaliana]
 gi|9758455|dbj|BAB08984.1| Gene info 40S ribosomal protein S17 [Arabidopsis thaliana]
 gi|23507769|gb|AAN38688.1| UniGene infoGene info At5g04800/MUK11_12 [Arabidopsis thaliana]
Length=141

 Score =  199 bits (506),  Expect = 3e-51
 Identities = 105/129 (81%), Positives = 112/129 (86%), Gaps = 1/129 (0%)
 Frame = +3

Query  24   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKIIEEVAIIPSKRLRNKIAGFSTHLMKR  203
            MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKI+EEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct  1    MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR  60

Query  204  IQKGPVRGISLKLQEEERERRMDFVPDESAIKVDQIEVDKETLDMPFKFLGWLIFLGLVR  383
            IQKGPVRGISLKLQEEERERRMDFVPDESAIK D+I+VDKETL+M    LG     G+  
Sbjct  61   IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEM-LASLGMSDTPGISA  119

Query  384  VDPGAGPVP  410
            V+P     P
Sbjct  120  VEPQQAMAP  128


>gi|15228335|ref|NP_187672.1| UniGene infoGene info structural constituent of ribosome [Arabidopsis thaliana]
 gi|20139843|sp|Q9SQZ1|RS17C_ARATH Gene info 40S ribosomal protein S17-3
 gi|12322775|gb|AAG51372.1|AC011560_4 Gene info putative 40S ribosomal protein S17; 27898-27476 [Arabidopsis 
thaliana]
 gi|8567795|gb|AAF76367.1| Gene info 40S ribosomal protein S17, putative [Arabidopsis thaliana]
 gi|17380850|gb|AAL36237.1| UniGene infoGene info putative 40S ribosomal protein S17 [Arabidopsis thaliana]
 gi|20259073|gb|AAM14252.1| UniGene infoGene info putative 40S ribosomal protein S17 [Arabidopsis thaliana]
 gi|21593823|gb|AAM65790.1| UniGene infoGene info 40S ribosomal protein S17-3 [Arabidopsis thaliana]
Length=140

 Score =  199 bits (506),  Expect = 3e-51
 Identities = 105/135 (77%), Positives = 114/135 (84%), Gaps = 1/135 (0%)
 Frame = +3

Query  24   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKIIEEVAIIPSKRLRNKIAGFSTHLMKR  203
            MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKI+EEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct  1    MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR  60

Query  204  IQKGPVRGISLKLQEEERERRMDFVPDESAIKVDQIEVDKETLDMPFKFLGWLIFLGLVR  383
            IQKGPVRGISLKLQEEERERRMDFVPDESAIK+D ++VDKETL+M    LG     G+ +
Sbjct  61   IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEM-LASLGMSDIAGISQ  119

Query  384  VDPGAGPVPQNRVRP  428
            V+      P    RP
Sbjct  120  VETQQAMAPAVFGRP  134


>gi|20141760|sp|P49215|RS17_LYCES Gene info 40S ribosomal protein S17
 gi|5758304|gb|AAD50774.1|AF161704_1 UniGene infoGene info 40S ribosomal protein S17 [Lycopersicon esculentum]
Length=144

 Score =  199 bits (506),  Expect = 3e-51
 Identities = 101/105 (96%), Positives = 103/105 (98%), Gaps = 0/105 (0%)
 Frame = +3

Query  24   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKIIEEVAIIPSKRLRNKIAGFSTHLMKR  203
            MGRVRTKTVKKSSRQVIERYYS+MTLDFHTNKKI+EEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct  1    MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR  60

Query  204  IQKGPVRGISLKLQEEERERRMDFVPDESAIKVDQIEVDKETLDM  338
            IQKGPVRGISLKLQEEERERRMDFVPDESAIK D IEVDKETLDM
Sbjct  61   IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDM  105


>gi|21593447|gb|AAM65414.1| UniGene info 40S ribosomal protein S17-like [Arabidopsis thaliana]
Length=141

 Score =  196 bits (499),  Expect = 2e-50
 Identities = 104/129 (80%), Positives = 111/129 (86%), Gaps = 1/129 (0%)
 Frame = +3

Query  24   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKIIEEVAIIPSKRLRNKIAGFSTHLMKR  203
            MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKI+EEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct  1    MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR  60

Query  204  IQKGPVRGISLKLQEEERERRMDFVPDESAIKVDQIEVDKETLDMPFKFLGWLIFLGLVR  383
            IQKGPVRGISLKLQEEERERRMDFVP ESAIK D+I+VDKETL+M    LG     G+  
Sbjct  61   IQKGPVRGISLKLQEEERERRMDFVPGESAIKTDEIKVDKETLEM-LASLGMSDTPGISA  119

Query  384  VDPGAGPVP  410
            V+P     P
Sbjct  120  VEPQQAMAP  128


>gi|115450215|ref|NP_001048708.1| Gene info Os03g0109500 [Oryza sativa (japonica cultivar-group)]
 gi|24431604|gb|AAN61484.1| Gene info Putative 40S ribosomal protein S17 [Oryza sativa (japonica cultivar-group)]
 gi|108705781|gb|ABF93576.1| Gene info 40S ribosomal protein S17, putative, expressed [Oryza sativa 
(japonica cultivar-group)]
 gi|113547179|dbj|BAF10622.1| Gene info Os03g0109500 [Oryza sativa (japonica cultivar-group)]
Length=144

 Score =  192 bits (489),  Expect = 3e-49
 Identities = 98/130 (75%), Positives = 111/130 (85%), Gaps = 1/130 (0%)
 Frame = +3

Query  24   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKIIEEVAIIPSKRLRNKIAGFSTHLMKR  203
            MGRVRTKTVKK+SRQVIE+YYSRMTLDFHTNKK++EEV+I+PSKRLRNK+AGFSTHLM+R
Sbjct  1    MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFSTHLMRR  60

Query  204  IQKGPVRGISLKLQEEERERRMDFVPDESAIKVDQIEVDKETLDMPFKFLGWLIFLGLVR  383
            IQ+GPVRGISLKLQEEERERRMDFVPD SA++VD I VDKETLDM    LG     G+VR
Sbjct  61   IQRGPVRGISLKLQEEERERRMDFVPDRSALEVDDIRVDKETLDM-LTSLGMADLPGVVR  119

Query  384  VDPGAGPVPQ  413
                +   PQ
Sbjct  120  QPDASTSAPQ  129


>gi|115481984|ref|NP_001064585.1| Gene info Os10g0411800 [Oryza sativa (japonica cultivar-group)]
 gi|31432043|gb|AAP53735.1| Gene info 40S ribosomal protein S17-4, putative, expressed [Oryza sativa 
(japonica cultivar-group)]
 gi|113639194|dbj|BAF26499.1| Gene info Os10g0411800 [Oryza sativa (japonica cultivar-group)]
Length=141

 Score =  184 bits (466),  Expect = 1e-46
 Identities = 86/105 (81%), Positives = 104/105 (99%), Gaps = 0/105 (0%)
 Frame = +3

Query  24   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKIIEEVAIIPSKRLRNKIAGFSTHLMKR  203
            MGRVRTKTVKK+SRQVIE+YYSRMTLDFHTNKK++EEV+I+PSKRLRNK+AGF+THLM+R
Sbjct  1    MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRR  60

Query  204  IQKGPVRGISLKLQEEERERRMDFVPDESAIKVDQIEVDKETLDM  338
            IQ+GPVRGISLKLQEEERERRMDFVP++SA++V++I VDKET++M
Sbjct  61   IQRGPVRGISLKLQEEERERRMDFVPEKSALEVEEIRVDKETMEM  105


>gi|116057495|emb|CAL51922.1|  40S ribosomal protein S17 (ISS) [Ostreococcus tauri]
Length=134

 Score =  179 bits (455),  Expect = 3e-45
 Identities = 86/105 (81%), Positives = 101/105 (96%), Gaps = 0/105 (0%)
 Frame = +3

Query  24   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKIIEEVAIIPSKRLRNKIAGFSTHLMKR  203
            MGRVRTKTVKK+SRQ+IE+YYSR+TLDF TNK+I +E+AIIPSKRLRNKIAGF+THLMKR
Sbjct  1    MGRVRTKTVKKASRQIIEKYYSRLTLDFATNKRIADEIAIIPSKRLRNKIAGFTTHLMKR  60

Query  204  IQKGPVRGISLKLQEEERERRMDFVPDESAIKVDQIEVDKETLDM  338
            IQ+GPVRGISLKLQEEERERRMDFVP++SA+ VD IEVD++T+DM
Sbjct  61   IQRGPVRGISLKLQEEERERRMDFVPEKSALDVDSIEVDRDTMDM  105


>gi|603570|emb|CAA58444.1| UniGene info ribosomal protein S17 [Solanum lycopersicum]
Length=71

 Score = 90.1 bits (222),  Expect = 3e-18
 Identities = 45/48 (93%), Positives = 45/48 (93%), Gaps = 0/48 (0%)
 Frame = +3

Query  195  MKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKVDQIEVDKETLDM  338
            MKRIQKGPVRGISLKLQEEERERRMDFVPDESAIK D IE DKETLDM
Sbjct  1    MKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEFDKETLDM  48


>gi|18411885|ref|NP_565175.1| UniGene infoGene info RNA binding / nucleic acid binding [Arabidopsis thaliana]
 gi|21537200|gb|AAM61541.1| UniGene infoGene info RNA recognition motif-containing protein SEB-4 [Arabidopsis thaliana]
Length=287

 Score = 31.6 bits (70),  Expect = 1.2
 Identities = 21/61 (34%), Positives = 24/61 (39%), Gaps = 12/61 (19%)
 Frame = +2

Query  62   PPSDRAVLLPHD---------PRFPHQQEDHRRSGYNPIQEAPQQDRRFLDPSHETYPEG  214
            P S  A ++P           PR P+Q   H    YNP Q   Q   RF  PS   YP  
Sbjct  182  PSSSGATIMPSPYYYGYSLQAPRVPYQHHHHLPQPYNPQQHHHQ---RFSSPSFLVYPSN  238

Query  215  S  217
            S
Sbjct  239  S  239


>gi|8052542|gb|AAF71806.1|AC013430_15  F3F9.20 [Arabidopsis thaliana]
Length=302

 Score = 31.6 bits (70),  Expect = 1.2
 Identities = 21/61 (34%), Positives = 24/61 (39%), Gaps = 12/61 (19%)
 Frame = +2

Query  62   PPSDRAVLLPHD---------PRFPHQQEDHRRSGYNPIQEAPQQDRRFLDPSHETYPEG  214
            P S  A ++P           PR P+Q   H    YNP Q   Q   RF  PS   YP  
Sbjct  197  PSSSGATIMPSPYYYGYSLQAPRVPYQHHHHLPQPYNPQQHHHQ---RFSSPSFLVYPSN  253

Query  215  S  217
            S
Sbjct  254  S  254


>gi|42572157|ref|NP_974169.1| UniGene infoGene info RNA binding / nucleic acid binding [Arabidopsis thaliana]
 gi|110736924|dbj|BAF00419.1| Gene info hypothetical protein [Arabidopsis thaliana]
Length=271

 Score = 31.6 bits (70),  Expect = 1.2
 Identities = 21/61 (34%), Positives = 24/61 (39%), Gaps = 12/61 (19%)
 Frame = +2

Query  62   PPSDRAVLLPHD---------PRFPHQQEDHRRSGYNPIQEAPQQDRRFLDPSHETYPEG  214
            P S  A ++P           PR P+Q   H    YNP Q   Q   RF  PS   YP  
Sbjct  182  PSSSGATIMPSPYYYGYSLQAPRVPYQHHHHLPQPYNPQQHHHQ---RFSSPSFLVYPSN  238

Query  215  S  217
            S
Sbjct  239  S  239


>gi|92886492|gb|ABE88359.1|  Lipoxygenase [Medicago truncatula]
Length=869

 Score = 30.0 bits (66),  Expect = 3.3
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
 Frame = +3

Query  162  RNKIAGFSTHLMKRIQKGPVRG--------ISLKLQEEERERRMDFVPDESAIKVDQIEV  317
            R  IAG + H++KRIQ+ P +          +  + EE+ E  MD V  E AI+ +++ +
Sbjct  377  REMIAGVNPHIIKRIQEFPPKSKLNTDYGDNTSTITEEQLELNMDGVTVEEAIQNNRLYI  436


>gi|77554335|gb|ABA97131.1|  retrotransposon protein, putative, unclassified [Oryza sativa 
(japonica cultivar-group)]
Length=741

 Score = 30.0 bits (66),  Expect = 3.3
 Identities = 27/89 (30%), Positives = 35/89 (39%), Gaps = 11/89 (12%)
 Frame = +2

Query  26   GPRPNEDSEEIVPPSDRAVLLPHDPRFPHQQEDHRRSGYNPIQEAP-------QQDRR--  178
            G R  ED+    PP     L       P +   H + G + ++E+        + DRR  
Sbjct  105  GKRKLEDTPSPSPPRGGGALFFCLSEIPSRPSRHSKFGRSEVEESTTAEARRREADRREA  164

Query  179  --FLDPSHETYPEGSRAWHFSEAARRRAR  259
               L  S ET  E  RA    EAAR  AR
Sbjct  165  ADRLRESEETAQEAVRARQAEEAAREEAR  193


>gi|108711657|gb|ABF99452.1|  Calreticulin family protein, expressed [Oryza sativa (japonica 
cultivar-group)]
Length=1111

 Score = 29.6 bits (65),  Expect = 4.4
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
 Frame = -1

Query  212  LLDTFHEMGRETGDLVAEPLGWDYSHFFDDLLVGVEIEGH---AGVVP----LDHLAGRF  54
            LLD+  + G + G +    L   Y+ F  DL V +E+ G    +GV P       L   F
Sbjct  239  LLDSMRQEGTQPGVVTWNTLISSYARF-GDLDVAMELLGQMEESGVAPDVVTWTSLVSGF  297

Query  53   LHCLRSDAAHGCF  15
            +H  RSD A  CF
Sbjct  298  VHMDRSDEALRCF  310


>gi|115452921|ref|NP_001050061.1| Gene info Os03g0339700 [Oryza sativa (japonica cultivar-group)]
 gi|108708050|gb|ABF95845.1| Gene info expressed protein [Oryza sativa (japonica cultivar-group)]
 gi|113548532|dbj|BAF11975.1| Gene info Os03g0339700 [Oryza sativa (japonica cultivar-group)]
Length=544

 Score = 29.6 bits (65),  Expect = 4.4
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
 Frame = +3

Query  174  AGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKVDQIEVDKETLDM  338
            A +S+HL++R+   P    + K Q EE ++ +D     + ++ D I  +KETLD+
Sbjct  41   AAWSSHLIRRMFAPP----NPKEQSEESKQPVDIKEQAAQLEHDLIIKEKETLDV  91


>gi|30103011|gb|AAP21424.1| Gene info putative pentatricopeptide repeat containing protein [Oryza sativa 
(japonica cultivar-group)]
Length=859

 Score = 29.6 bits (65),  Expect = 4.4
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
 Frame = -1

Query  212  LLDTFHEMGRETGDLVAEPLGWDYSHFFDDLLVGVEIEGH---AGVVP----LDHLAGRF  54
            LLD+  + G + G +    L   Y+ F  DL V +E+ G    +GV P       L   F
Sbjct  239  LLDSMRQEGTQPGVVTWNTLISSYARF-GDLDVAMELLGQMEESGVAPDVVTWTSLVSGF  297

Query  53   LHCLRSDAAHGCF  15
            +H  RSD A  CF
Sbjct  298  VHMDRSDEALRCF  310


>gi|3297822|emb|CAA19880.1|  putative protein [Arabidopsis thaliana]
 gi|7270347|emb|CAB80115.1|  putative protein [Arabidopsis thaliana]
Length=247

 Score = 29.3 bits (64),  Expect = 5.7
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
 Frame = +3

Query  225  GISLKLQEEERE-------RRMDFVPDESAIKVDQIEVDKETLDMPFKFLGWLIFLGLVR  383
            G + + +EEE E       R  +   D+S++K DQ+ +DKE +   F   G ++   L+ 
Sbjct  182  GQNFREEEEEEEKGEVSKKREREANNDDSSLKEDQVNIDKEQIRNNFTSTGEVLLKRLLH  241

Query  384  V  386
            +
Sbjct  242  I  242


>gi|115477116|ref|NP_001062154.1| Gene info Os08g0500200 [Oryza sativa (japonica cultivar-group)]
 gi|42407352|dbj|BAD08813.1| Gene info unknown protein [Oryza sativa (japonica cultivar-group)]
 gi|113624123|dbj|BAF24068.1| Gene info Os08g0500200 [Oryza sativa (japonica cultivar-group)]
Length=513

 Score = 29.3 bits (64),  Expect = 5.7
 Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 16/94 (17%)
 Frame = +2

Query  5    RAQRNNHGPRPNEDSEEIVPPSDRAVLLPHD-----PRFPHQQ----EDHRRSGYNPIQE  157
            ++Q+   G R  EDSE+  P   R     HD     PR  HQ+    E  RR       +
Sbjct  260  KSQKEKKGQR--EDSEDDKPKKSRKDRRRHDSEDEEPRRKHQRSEDDEPKRRQSEVSGDD  317

Query  158  APQQDRRFLDPSHETYPEGSRAWHFSEAARRRAR  259
             P++ R+ + P H+ Y    R    S+A  RR R
Sbjct  318  EPRRRRQEM-PKHDEYSRRGR----SDADDRRGR  346


>gi|19071644|gb|AAL84311.1|AC073556_28 Gene info putative DNA-binding protein [Oryza sativa (japonica cultivar-group)]
 gi|108706412|gb|ABF94207.1|  DNA-binding protein, putative, expressed [Oryza sativa (japonica 
cultivar-group)]
 gi|108706413|gb|ABF94208.1|  DNA-binding protein, putative, expressed [Oryza sativa (japonica 
cultivar-group)]
Length=366

 Score = 28.9 bits (63),  Expect = 7.5
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 0/34 (0%)
 Frame = +2

Query  89   PHDPRFPHQQEDHRRSGYNPIQEAPQQDRRFLDP  190
            PHDP+  H    H   G++  Q+  QQ    L P
Sbjct  30   PHDPQEHHHHHHHGHHGHHHEQQQQQQHHHHLGP  63


>gi|4678316|emb|CAB41127.1|  putative protein [Arabidopsis thaliana]
Length=347

 Score = 28.9 bits (63),  Expect = 7.5
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
 Frame = +2

Query  17   NNHGPRPNEDSEEIVPPSDRAVLLPHDPRFPHQQEDHRRSGYNPIQEAPQQDRRFLDPSH  196
            +NH    +    EI    D+    P DPR P  +  +R S       + ++D R  D SH
Sbjct  57   SNHTKSTDNKDSEIRSIRDKLKKKPEDPRVP--ERSYRESSERRRYRSRERDER--DKSH  112

Query  197  ETYPEGS-RAWHFSEAARRRARA  262
                  S R   + +  RRR+R+
Sbjct  113  RRRSRSSERRSSYVDRERRRSRS  135


>gi|41053170|dbj|BAD08112.1| Gene info hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length=252

 Score = 28.9 bits (63),  Expect = 7.5
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 0/57 (0%)
 Frame = +2

Query  83   LLPHDPRFPHQQEDHRRSGYNPIQEAPQQDRRFLDPSHETYPEGSRAWHFSEAARRR  253
            LLP  P     +  H  S   P  + P + R  L P+H   P G+RA   + A +RR
Sbjct  74   LLPPSPPPTAHRHLHLLSPPPPPPDFPARRRTLLGPTHRRPPLGARALRSACARQRR  130


>gi|42565712|ref|NP_190395.3| UniGene infoGene info unknown protein [Arabidopsis thaliana]
 gi|34365691|gb|AAQ65157.1| UniGene infoGene info At3g48120 [Arabidopsis thaliana]
 gi|51971064|dbj|BAD44224.1| UniGene infoGene info putative protein [Arabidopsis thaliana]
 gi|51971096|dbj|BAD44240.1| UniGene infoGene info putative protein [Arabidopsis thaliana]
Length=328

 Score = 28.9 bits (63),  Expect = 7.5
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
 Frame = +2

Query  17   NNHGPRPNEDSEEIVPPSDRAVLLPHDPRFPHQQEDHRRSGYNPIQEAPQQDRRFLDPSH  196
            +NH    +    EI    D+    P DPR P  +  +R S       + ++D R  D SH
Sbjct  57   SNHTKSTDNKDSEIRSIRDKLKKKPEDPRVP--ERSYRESSERRRYRSRERDER--DKSH  112

Query  197  ETYPEGS-RAWHFSEAARRRARA  262
                  S R   + +  RRR+R+
Sbjct  113  RRRSRSSERRSSYVDRERRRSRS  135


>gi|52076255|dbj|BAD45023.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length=446

 Score = 28.5 bits (62),  Expect = 9.7
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 0/38 (0%)
 Frame = -3

Query  258  RALLLAASEKCHARDPSGYVS*DGSRNRRSCCGASWMG  145
            + +++AA+++C  R P      D S  RR C   SW G
Sbjct  144  KQVVVAAADRCFLRTPPRRPDVDASPLRRLCVRMSWRG  181







  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 16, 2007  5:53 PM
  Number of letters in database: 101,065,385
  Number of sequences in database:  283,397
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283397
Number of Hits to DB: 328
Number of extensions: 6
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 449
Length of database: 101065385
Length adjustment: 103
Effective length of query: 346
Effective length of database: 71875494
Effective search space: 3306272724
Effective search space used: 3306272724
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 62 (28.5 bits)