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BLASTX 2.2.15 [Oct-15-2006] 
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman 
(1997), "Gapped BLAST and PSI-BLAST: a new generation of 
protein database search programs", Nucleic Acids Res. 25:3389-3402.

RID: 1169014882-29202-64356135562.BLASTQ4


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
           4,460,989 sequences; 1,533,424,333 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs
Taxonomy reports

Query=  Contig377
Length=237

Distribution of 9 Blast Hits on the Query Sequence


                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|42563076|ref|NP_177107.2|  unknown protein [Arabidopsis tha...  30.4    2.0   UniGene infoGene info
gi|12597793|gb|AAG60105.1|AC073178_16  hypothetical protein [Arab  30.4    2.0  
gi|38112202|gb|AAR11195.1|  zeaxanthin epoxidase [Vitis vinifera]  29.6    3.3   UniGene info
gi|56070063|gb|AAV70692.1|  ribosomal protein 4 [Gnetum costatum]  29.3    4.4  
gi|51860461|gb|AAU11367.1|  ribosomal protein small subunit 4 [Gn  29.3    4.4  
gi|51860463|gb|AAU11368.1|  ribosomal protein small subunit 4 [Gn  29.3    4.4  
gi|51860469|gb|AAU11371.1|  ribosomal protein small subunit 4 [Gn  29.3    4.4  
gi|56070061|gb|AAV70691.1|  ribosomal protein 4 [Gnetum gnemon]    28.5    7.4  
gi|108773035|ref|YP_635945.1|  cell division protein [Scenedes...  28.1    9.7   Gene info
Alignments

>gi|42563076|ref|NP_177107.2| UniGene infoGene info unknown protein [Arabidopsis thaliana]
 gi|41079301|gb|AAR99492.1| UniGene infoGene info PHO1-like protein [Arabidopsis thaliana]
Length=777

 Score = 30.4 bits (67),  Expect = 2.0
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 0/30 (0%)
 Frame = +2

Query  23   TSGIAPGLQVFD*MFINWGLSDYAAKNPFL  112
            +SG+A G+  F  + I+WGL    +KNP+L
Sbjct  652  SSGVATGMNTFWDIVIDWGLLRKHSKNPYL  681


>gi|12597793|gb|AAG60105.1|AC073178_16  hypothetical protein [Arabidopsis thaliana]
Length=777

 Score = 30.4 bits (67),  Expect = 2.0
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 0/30 (0%)
 Frame = +2

Query  23   TSGIAPGLQVFD*MFINWGLSDYAAKNPFL  112
            +SG+A G+  F  + I+WGL    +KNP+L
Sbjct  652  SSGVATGMNTFWDIVIDWGLLRKHSKNPYL  681


>gi|38112202|gb|AAR11195.1| UniGene info zeaxanthin epoxidase [Vitis vinifera]
Length=658

 Score = 29.6 bits (65),  Expect = 3.3
 Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 0/22 (0%)
 Frame = +3

Query  3    VGGRSSKLVGLPPGCRCLTKCS  68
            +GG SSKL G PP CR   K S
Sbjct  487  LGGNSSKLEGRPPSCRLSDKAS  508


>gi|56070063|gb|AAV70692.1|  ribosomal protein 4 [Gnetum costatum]
Length=160

 Score = 29.3 bits (64),  Expect = 4.4
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = -1

Query  207  FASKPQDLVVIKPKNPS*NSSKQVILRNQHTSK  109
            +  KPQD++ IK KNP  +  K +I RN++ ++
Sbjct  89   YRCKPQDVITIKGKNP--DQLKTIITRNRNKAR  119


>gi|51860461|gb|AAU11367.1|  ribosomal protein small subunit 4 [Gnetum gnemon]
Length=195

 Score = 29.3 bits (64),  Expect = 4.4
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = -1

Query  207  FASKPQDLVVIKPKNPS*NSSKQVILRNQHTSK  109
            +  KPQD++ IK KNP  +  K +I RN++ ++
Sbjct  120  YRCKPQDVITIKGKNP--DQLKTIITRNRNKAR  150


>gi|51860463|gb|AAU11368.1|  ribosomal protein small subunit 4 [Gnetum gnemonoides]
Length=198

 Score = 29.3 bits (64),  Expect = 4.4
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = -1

Query  207  FASKPQDLVVIKPKNPS*NSSKQVILRNQHTSK  109
            +  KPQD++ IK KNP  +  K +I RN++ ++
Sbjct  123  YRCKPQDVITIKGKNP--DQLKTIITRNRNKAR  153


>gi|51860469|gb|AAU11371.1|  ribosomal protein small subunit 4 [Gnetum leyboldii]
Length=200

 Score = 29.3 bits (64),  Expect = 4.4
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = -1

Query  207  FASKPQDLVVIKPKNPS*NSSKQVILRNQHTSK  109
            +  KPQD++ IK KNP  +  K +I RN++ ++
Sbjct  125  YRCKPQDVITIKGKNP--DQLKTIITRNRNKTR  155


>gi|56070061|gb|AAV70691.1|  ribosomal protein 4 [Gnetum gnemon]
Length=160

 Score = 28.5 bits (62),  Expect = 7.4
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = -1

Query  207  FASKPQDLVVIKPKNPS*NSSKQVILRNQHTSK  109
            +  KPQD++ IK KNP  +  K +I RN++ ++
Sbjct  89   YRCKPQDVITIKGKNP--DQLKTLITRNRNKAR  119


>gi|108773035|ref|YP_635945.1| Gene info cell division protein [Scenedesmus obliquus]
 gi|88696601|gb|ABD48227.1| Gene info cell division protein [Scenedesmus obliquus]
Length=3665

 Score = 28.1 bits (61),  Expect = 9.7
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 0/42 (0%)
 Frame = -3

Query  232   QNSSEKQFFCQQTTRPCSHKTKKPILKQLKTSDFKKSTHIQK  107
             QN S   F C ++        K    K LK ++F+K T+ +K
Sbjct  1819  QNQSLSNFLCSESFEKTQQNQKNEKTKVLKNNEFEKLTNARK  1860







  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 16, 2007  5:53 PM
  Number of letters in database: 101,065,385
  Number of sequences in database:  283,397
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283397
Number of Hits to DB: 198
Number of extensions: 7
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 237
Length of database: 101065385
Length adjustment: 50
Effective length of query: 187
Effective length of database: 86895535
Effective search space: 2519970515
Effective search space used: 2519970515
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 61 (28.1 bits)