Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1169016430-17589-53326627833.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,460,989 sequences; 1,533,424,333 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig399 Length=326
Score E Sequences producing significant alignments: (Bits) Value gi|15227787|ref|NP_179898.1| GH3.3 [Arabidopsis thaliana] >gi... 145 5e-35 gi|15226032|ref|NP_179101.1| GH3.1 [Arabidopsis thaliana] >gi... 143 2e-34 gi|15235538|ref|NP_195455.1| YDK1 [Arabidopsis thaliana] >gi|... 142 3e-34 gi|6520208|dbj|BAA87950.1| GH3 homolog [Arabidopsis thaliana] 142 3e-34 gi|41393668|gb|AAS02074.1| auxin and ethylene responsive GH3-... 136 3e-32 gi|4887010|gb|AAD32141.1|AF123503_1 Nt-gh3 deduced protein [Nico 136 3e-32 gi|115473129|ref|NP_001060163.1| Os07g0592600 [Oryza sativa (... 135 3e-32 gi|18591|emb|CAA42636.1| auxin-responsive GH3 product [Glycine m 135 6e-32 gi|15218026|ref|NP_176159.1| GH3.4 [Arabidopsis thaliana] >gi... 131 6e-31 gi|115440131|ref|NP_001044345.1| Os01g0764800 [Oryza sativa (... 112 4e-25 gi|115472973|ref|NP_001060085.1| Os07g0576500 [Oryza sativa (... 111 9e-25 gi|15239653|ref|NP_200262.1| DFL1 (DWARF IN LIGHT 1) [Arabido... 107 1e-23 gi|15237038|ref|NP_194456.1| GH3.5 [Arabidopsis thaliana] >gi... 107 1e-23 gi|115440375|ref|NP_001044467.1| Os01g0785400 [Oryza sativa (... 105 4e-23 gi|17978966|gb|AAL47444.1| AT5g54510/F24B18_13 [Arabidopsis thal 104 8e-23 gi|115464735|ref|NP_001055967.1| Os05g0500900 [Oryza sativa (... 102 4e-22 gi|70561314|emb|CAJ14972.1| auxin-induced GH3 protein [Pinus pin 101 7e-22 gi|30690222|ref|NP_849718.1| GH3.17 [Arabidopsis thaliana] 88.6 6e-18 gi|15217844|ref|NP_174134.1| GH3.17 [Arabidopsis thaliana] >g... 88.6 6e-18 gi|77551235|gb|ABA94032.1| GH3 auxin-responsive promoter fami... 85.9 4e-17 gi|15227128|ref|NP_182296.1| unknown protein [Arabidopsis tha... 77.8 1e-14 gi|82592857|sp|P0C0M3|GH311_ORYSA Probable indole-3-acetic ac... 75.1 7e-14 gi|91805833|gb|ABE65645.1| auxin-responsive GH3 family protein [ 74.7 9e-14 gi|15240601|ref|NP_196836.1| unknown protein [Arabidopsis tha... 74.7 9e-14 gi|15220661|ref|NP_173729.1| unknown protein [Arabidopsis tha... 74.7 9e-14 gi|7543904|emb|CAB87144.1| auxin reponsive-like protein [Arabido 73.2 3e-13 gi|30684377|ref|NP_196841.2| unknown protein [Arabidopsis tha... 73.2 3e-13 gi|7543905|emb|CAB87145.1| auxin reponsive-like protein [Arabido 72.8 3e-13 gi|42567818|ref|NP_196842.2| unknown protein [Arabidopsis thalia 72.8 3e-13 gi|15240608|ref|NP_196839.1| unknown protein [Arabidopsis tha... 72.0 6e-13 gi|15240613|ref|NP_196840.1| unknown protein [Arabidopsis tha... 71.2 1e-12 gi|15221934|ref|NP_175300.1| unknown protein [Arabidopsis tha... 69.7 3e-12 gi|40644906|emb|CAD21959.1| GH3-like protein [Physcomitrella ... 66.6 2e-11 gi|15221933|ref|NP_175299.1| unknown protein [Arabidopsis tha... 65.9 4e-11 gi|86212374|gb|ABC87760.1| jasmonic acid-amino acid-conjugati... 60.8 1e-09 gi|51102314|gb|AAT95870.1| putative GH3-like protein [Brassica j 60.1 2e-09 gi|115468210|ref|NP_001057704.1| Os06g0499500 [Oryza sativa (... 59.3 4e-09 gi|77539386|dbj|BAE46566.1| putative auxin-regulated protein [Ni 55.8 4e-08 gi|115465721|ref|NP_001056460.1| Os05g0586200 [Oryza sativa (... 55.8 4e-08 gi|15242095|ref|NP_199960.1| unknown protein [Arabidopsis tha... 53.9 2e-07 gi|62319728|dbj|BAD95281.1| putative auxin-responsive protein [A 53.5 2e-07 gi|15292855|gb|AAK92798.1| putative auxin-responsive protein [Ar 53.5 2e-07 gi|18407057|ref|NP_566071.1| JAR1 (JASMONATE RESISTANT 1) [Ar... 53.5 2e-07 gi|62319623|dbj|BAD95110.1| putative GH3-like protein [Arabidops 53.1 3e-07 gi|15236304|ref|NP_192249.1| DFL2 (DWARF IN LIGHT 2) [Arabido... 53.1 3e-07 gi|115462041|ref|NP_001054620.1| Os05g0143800 [Oryza sativa (... 50.1 2e-06 gi|56783930|dbj|BAD81367.1| putative Nt-gh3 deduced protein [... 49.3 4e-06 gi|75269829|sp|Q53P49|GH312_ORYSA Probable indole-3-acetic ac... 47.0 2e-05 gi|82592860|sp|Q60EY1|GH36_ORYSA Probable indole-3-acetic aci... 43.5 2e-04 gi|16610205|dbj|BAB71764.1| GH3-like protein 1 [Physcomitrell... 42.7 4e-04 gi|53749339|gb|AAU90198.1| unknown protein [Oryza sativa (japoni 39.7 0.003 gi|115472971|ref|NP_001060084.1| Os07g0576100 [Oryza sativa (... 33.9 0.18 gi|84663851|gb|ABC60338.1| unknown [Musa acuminata] 30.4 2.0 gi|109629729|gb|ABG35119.1| eukaryotic translation initiation... 28.1 9.8 gi|48431259|gb|AAT44121.1| eukaryotic translation initiation ... 28.1 9.8
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 16, 2007 5:53 PM Number of letters in database: 101,065,385 Number of sequences in database: 283,397 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283397 Number of Hits to DB: 199 Number of extensions: 3 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 326 Length of database: 101065385 Length adjustment: 76 Effective length of query: 250 Effective length of database: 79527213 Effective search space: 2544870816 Effective search space used: 2544870816 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 61 (28.1 bits)