RID=1169016479-20283-154118449000.BLASTQ1, Contig402

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1169016479-20283-154118449000.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,460,989 sequences; 1,533,424,333 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig402
Length=521

Distribution of 11 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|13926174|gb|AAK49569.1|AF370561_1  Unknown protein [Arabido...  43.1    6e-04 
gi|6729517|emb|CAB67673.1|  putative protein [Arabidopsis thalian  38.5    0.014
gi|92897905|gb|ABE93950.1|  hypothetical protein MtrDRAFT_AC12...  36.2    0.069
gi|126156|sp|P09800|LEGB_GOSHI  Legumin B precursor (Beta-glob...  32.3    0.99 
gi|92893904|gb|ABE91954.1|  RNA-binding region RNP-1 (RNA reco...  30.0    4.9  
gi|115463537|ref|NP_001055368.1|  Os05g0373500 [Oryza sativa (...  29.6    6.4   
gi|37805933|dbj|BAC99350.1|  putative teosinte branched1 prote...  29.6    6.4   
gi|20197865|gb|AAM15289.1|  putative RNA-binding protein [Arabido  29.3    8.4  
gi|18406092|ref|NP_565990.1|  MEI2; RNA binding / nucleic acid...  29.3    8.4   
gi|6650523|gb|AAF21885.1|AF101056_1  MEI2 [Arabidopsis thaliana]   29.3    8.4   
gi|42571201|ref|NP_973674.1|  MEI2; RNA binding / nucleic acid bi  29.3    8.4

Alignments

 

>gi|13926174|gb|AAK49569.1|AF370561_1  Unknown protein [Arabidopsis thaliana]
 gi|4056498|gb|AAC98064.1|  expressed protein [Arabidopsis thaliana]
Length=43

 Score = 43.1 bits (100),  Expect = 6e-04
 Identities = 20/28 (71%), Positives = 23/28 (82%), Gaps = 0/28 (0%)
 Frame = +3

Query  9   PSLTPFHAGSCSHRLKHLEKSDRRGNLS  92
           PSLTP+H+G  S+RLK LEK D RGNLS
Sbjct  16  PSLTPYHSGLSSNRLKPLEKCDWRGNLS  43


>gi|6729517|emb|CAB67673.1|  putative protein [Arabidopsis thaliana]
Length=41

 Score = 38.5 bits (88),  Expect = 0.014
 Identities = 18/28 (64%), Positives = 23/28 (82%), Gaps = 0/28 (0%)
 Frame = +3

Query  9   PSLTPFHAGSCSHRLKHLEKSDRRGNLS  92
           P+LT +H+G  S+RLK L+KSD RGNLS
Sbjct  14  PALTFYHSGLSSNRLKPLQKSDWRGNLS  41


>gi|92897905|gb|ABE93950.1|  hypothetical protein MtrDRAFT_AC125368g29v1 [Medicago truncatula]
Length=74

 Score = 36.2 bits (82),  Expect = 0.069
 Identities = 17/24 (70%), Positives = 17/24 (70%), Gaps = 0/24 (0%)
 Frame = +3

Query  9   PSLTPFHAGSCSHRLKHLEKSDRR  80
           P    FH GS SHRLK LEKSDRR
Sbjct  16  PFFNNFHNGSSSHRLKPLEKSDRR  39


>gi|126156|sp|P09800|LEGB_GOSHI  Legumin B precursor (Beta-globulin B) (LEGB-C134) [Contains: 
Legumin B acidic chain; Legumin B basic chain]
 gi|167373|gb|AAA33070.1|  vicilin precursor
 gi|1171335|gb|AAD09844.1|  legumin B [Gossypium hirsutum]
Length=516

 Score = 32.3 bits (72),  Expect = 0.99
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -1

Query  191  KDQKNLEEDGEQRGKGETRKGGKLLQQN*CEMLTKITTPITLFQMFQTMGTR  36
            +++ + EE+ E+RG+G  R+ G  L++  C M  K  TP +   +F   G R
Sbjct  314  QEEGSEEEEREERGRGR-RRSGNGLEETFCSMRLKHRTPASSADVFNPRGGR  364


>gi|92893904|gb|ABE91954.1|  RNA-binding region RNP-1 (RNA recognition motif); Concanavalin 
A-like lectin/glucanase; U2 auxiliary factor small subunit 
[Medicago truncatula]
Length=822

 Score = 30.0 bits (66),  Expect = 4.9
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 6/32 (18%)
 Frame = -3

Query  462  HPHHYHLHSNKHEVLPALCH*DHLPLENPILP  367
            H HH+H H  +HE      H D+ P  NP  P
Sbjct  142  HHHHHHHHQEQHE------HHDNRPTSNPFPP  167


>gi|115463537|ref|NP_001055368.1|  Os05g0373500 [Oryza sativa (japonica cultivar-group)]
 gi|113578919|dbj|BAF17282.1|  Os05g0373500 [Oryza sativa (japonica cultivar-group)]
Length=512

 Score = 29.6 bits (65),  Expect = 6.4
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
 Frame = -3

Query  477  HITSYHPHHYHLHSNKHEVLPALCH*D---HLPLE-----NPILPFAIPVTTKNPSFLRV  322
            H   +H HH+H H + HE    LC      H P+E     +P   F+ P T K  +   V
Sbjct  353  HQHHHHHHHHHHHHHSHEEKRHLCPSPAPVHSPVEQPKYRSPPSSFSHPYTNKPKNRTPV  412

Query  321  KTAA  310
              AA
Sbjct  413  APAA  416


>gi|37805933|dbj|BAC99350.1|  putative teosinte branched1 protein [Oryza sativa (japonica cultivar-group)]
Length=322

 Score = 29.6 bits (65),  Expect = 6.4
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 9/45 (20%)
 Frame = -3

Query  462  HPHHYHLHSNKHEVLPALCH*DHLPLENPILPFAIPVTTKNPSFL  328
            H HH+H  SN+           HLPL  P    + P ++ +PS L
Sbjct  37   HHHHHHCSSNQE---------PHLPLHPPAFLMSAPSSSSSPSTL  72


>gi|20197865|gb|AAM15289.1|  putative RNA-binding protein [Arabidopsis thaliana]
Length=803

 Score = 29.3 bits (64),  Expect = 8.4
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 0/35 (0%)
 Frame = +3

Query  351  SPVLRMEVLGSREVDDLSDIKQAILHACLNEDDND  455
            SP L   V+G+ E D L D++   L   L ED+N+
Sbjct  66   SPNLNKLVIGNSEKDSLEDVEPDALEILLPEDENE  100


>gi|18406092|ref|NP_565990.1|  MEI2; RNA binding / nucleic acid binding [Arabidopsis thaliana]
 gi|13605835|gb|AAK32903.1|AF367316_1  At2g42890/F7D19.11 [Arabidopsis thaliana]
 gi|20197963|gb|AAD21720.2|  putative RNA-binding protein [Arabidopsis thaliana]
 gi|23506039|gb|AAN28879.1|  At2g42890/F7D19.11 [Arabidopsis thaliana]
Length=843

 Score = 29.3 bits (64),  Expect = 8.4
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 0/35 (0%)
 Frame = +3

Query  351  SPVLRMEVLGSREVDDLSDIKQAILHACLNEDDND  455
            SP L   V+G+ E D L D++   L   L ED+N+
Sbjct  79   SPNLNKLVIGNSEKDSLEDVEPDALEILLPEDENE  113


>gi|6650523|gb|AAF21885.1|AF101056_1  MEI2 [Arabidopsis thaliana]
Length=833

 Score = 29.3 bits (64),  Expect = 8.4
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 0/35 (0%)
 Frame = +3

Query  351  SPVLRMEVLGSREVDDLSDIKQAILHACLNEDDND  455
            SP L   V+G+ E D L D++   L   L ED+N+
Sbjct  66   SPNLNKLVIGNSEKDSLEDVEPDALEILLPEDENE  100


>gi|42571201|ref|NP_973674.1|  MEI2; RNA binding / nucleic acid binding [Arabidopsis thaliana]
Length=830

 Score = 29.3 bits (64),  Expect = 8.4
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 0/35 (0%)
 Frame = +3

Query  351  SPVLRMEVLGSREVDDLSDIKQAILHACLNEDDND  455
            SP L   V+G+ E D L D++   L   L ED+N+
Sbjct  66   SPNLNKLVIGNSEKDSLEDVEPDALEILLPEDENE  100

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 16, 2007  5:53 PM
  Number of letters in database: 101,065,385
  Number of sequences in database:  283,397
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283397
Number of Hits to DB: 391
Number of extensions: 8
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 521
Length of database: 101065385
Length adjustment: 105
Effective length of query: 416
Effective length of database: 71308700
Effective search space: 4848991600
Effective search space used: 4848991600
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 63 (28.9 bits)