RID=1168930455-22883-107848366454.BLASTQ1, Contig43

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168930455-22883-107848366454.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Score E Sequences producing significant alignments: (Bits) Value gi|18400390|ref|NP_566488.1| unknown protein [Arabidopsis tha... 47.0 2e-05

gi|42407964|dbj|BAD09102.1| hypothetical protein [Oryza sativa ( 32.3 0.52

gi|86439724|emb|CAJ19340.1| photosystem 1 subunit 5 [Triticum ae 28.1 9.8

Alignments

 

>gi|18400390|ref|NP_566488.1|  unknown protein [Arabidopsis thaliana]
 gi|11994213|dbj|BAB01335.1|  unnamed protein product [Arabidopsis thaliana]
 gi|21592620|gb|AAM64569.1|  unknown [Arabidopsis thaliana]
 gi|27808500|gb|AAO24530.1|  At3g14430 [Arabidopsis thaliana]
 gi|110736260|dbj|BAF00100.1|  hypothetical protein [Arabidopsis thaliana]
Length=76

 Score = 47.0 bits (110),  Expect = 2e-05
 Identities = 44/74 (59%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
 Frame = +1

Query  10   KRVGTSRDMGKGRKGWTLTAAVNSVfeffrlaefeilfflffiiaflifKDLXXRPEYNQ  189
            +R GT+R +G  R    LT  V+SVF FFRLAEFEILF LF +I ++IFKDL  RPEYN+
Sbjct  4    RRAGTNR-VGMRRDDSLLTRFVDSVFYFFRLAEFEILFVLFMLITYVIFKDLTSRPEYNR  62

Query  190  LLVKXPGGVDLWPY  231
            +LV+ PGG D+WP+
Sbjct  63   ILVEKPGGSDIWPF  76


>gi|42407964|dbj|BAD09102.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length=125

 Score = 32.3 bits (72),  Expect = 0.52
 Identities = 39/67 (58%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
 Frame = +1

Query  28   RDMGKGRKGWTLTAAVNSVfeffrlaefeilfflffiiaflifKDLXXRPEYNQLLVKXP  207
            R +G+G  G  LT AV  VF   RLAEFEILF LFF+IAF++FKDL  RPEYN + VK P
Sbjct  7    RGVGRGDPG-LLTRAVEKVFRLVRLAEFEILFVLFFLIAFVLFKDLMSRPEYNSIFVKKP  65

Query  208  GGVDLWP  228
                 WP
Sbjct  66   DLDGRWP  72


>gi|86439724|emb|CAJ19340.1|  photosystem 1 subunit 5 [Triticum aestivum]
Length=183

 Score = 28.1 bits (61),  Expect = 9.8
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 0/27 (0%)
 Frame = +3

Query  9    EASGNESGHGQRQERVDADRRRQLRLR  89
            E   +E+ H QRQ R +AD  R+L+ R
Sbjct  98   EVEEDEAAHHQRQPRAEADHHRRLQRR  124

Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 242 Number of extensions: 2 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 325 Length of database: 101054579 Length adjustment: 76 Effective length of query: 249 Effective length of database: 79520055 Effective search space: 2544641760 Effective search space used: 2544641760 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 61 (28.1 bits)

Distribution of 3 Blast Hits on the Query Sequence