Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168930873-22454-128563441012.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig51 Length=505
Score E Sequences producing significant alignments: (Bits) Value gi|57471706|gb|AAW50984.1| ribosomal protein L13a [Triticum aest 186 8e-55 gi|115455427|ref|NP_001051314.1| Os03g0756000 [Oryza sativa (... 182 8e-55 gi|6093869|sp|O65055|RL13A_PICMA 60S ribosomal protein L13a >... 182 1e-53 gi|15239698|ref|NP_199687.1| structural constituent of riboso... 182 9e-53 gi|21326116|gb|AAM47582.1| putative 60S ribosomal protein [Sorgh 184 1e-52 gi|40748267|gb|AAR89618.1| 60S ribosomal protein L13a [Capsicum 178 1e-51 gi|76573371|gb|ABA46790.1| 60S ribosomal protein L13a-like prote 178 1e-51 gi|19423912|gb|AAL87341.1| putative 60S ribosomal protein [Arabi 179 2e-51 gi|15230197|ref|NP_189127.1| structural constituent of riboso... 179 2e-51 gi|79313149|ref|NP_001030654.1| structural constituent of riboso 180 4e-51 gi|15231394|ref|NP_187367.1| structural constituent of riboso... 180 4e-51 gi|15235617|ref|NP_193053.1| structural constituent of riboso... 177 5e-51 gi|115470251|ref|NP_001058724.1| Os07g0109500 [Oryza sativa (... 175 2e-50 gi|3914535|sp|O49885|RL13A_LUPLU 60S ribosomal protein L13a >... 165 1e-48 gi|62642266|gb|AAX92709.1| 60S ribosomal protein L13a [Picea abi 124 7e-37 gi|32401104|gb|AAP80748.1| 60S ribosomal protein [Kandelia cande 149 5e-36 gi|37718795|gb|AAR01666.1| putative ribosomal protein L13a [O... 113 2e-32 gi|13359437|dbj|BAB33414.1| putative senescence-associated prote 94.4 2e-19 gi|116060863|emb|CAL57341.1| 60S ribosomal protein L13a (ISS) [O 73.6 4e-19 gi|108711153|gb|ABF98948.1| 60S ribosomal protein L13a-2, put... 68.2 4e-19 gi|115455423|ref|NP_001051312.1| Os03g0755700 [Oryza sativa (... 68.2 4e-19 gi|20473412|gb|AAM22489.1| 36I5.8 [Oryza sativa (japonica cultiv 70.5 3e-12 gi|62732710|gb|AAX94829.1| retrotransposon protein, putative,... 38.1 1e-05 gi|115485267|ref|NP_001067777.1| Os11g0425800 [Oryza sativa (... 38.1 1e-05 gi|116058185|emb|CAL53374.1| Mitochondrial/chloroplast riboso... 42.7 7e-04 gi|15218435|ref|NP_177984.1| EMB1473; structural constituent ... 40.8 0.003 gi|6049132|gb|AAF02469.1|AF127593_1 putative 60S ribosomal pr... 30.4 0.006 gi|6049134|gb|AAF02470.1|AF127594_1 putative 60S ribosomal prote 30.0 0.007 gi|115439933|ref|NP_001044246.1| Os01g0749200 [Oryza sativa (... 39.3 0.007 gi|6049142|gb|AAF02474.1|AF127598_1 putative 60S ribosomal prote 28.9 0.016 gi|132659|sp|P12629|RK13_SPIOL 50S ribosomal protein L13, chl... 36.2 0.063 gi|1076557|pir||S54157 extensin-like protein - cowpea (fragment) 32.7 0.70 gi|6049138|gb|AAF02472.1|AF127596_1 putative 60S ribosomal prote 28.5 0.99 gi|116056379|emb|CAL52668.1| mRNA cleavage and polyadenylatio... 31.6 1.6 gi|38605901|emb|CAE04785.3| OSJNBb0020O11.13 [Oryza sativa (japo 31.6 1.6 gi|110737000|dbj|BAF00455.1| hypothetical protein [Arabidopsis t 30.8 2.7 gi|15240110|ref|NP_201488.1| ASL1 [Arabidopsis thaliana] >gi|... 30.8 2.7
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 392 Number of extensions: 0 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 505 Length of database: 101054579 Length adjustment: 105 Effective length of query: 400 Effective length of database: 71302934 Effective search space: 4492084842 Effective search space used: 4492084842 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 63 (28.9 bits)