RID=1168932194-24060-89885637233.BLASTQ4, Contig79

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168932194-24060-89885637233.BLASTQ4 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig79
Length=611

Distribution of 11 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|42563913|ref|NP_187597.2|  unknown protein [Arabidopsis tha...  89.7    7e-18 
gi|6681333|gb|AAF23250.1|AC015985_8  unknown protein [Arabidopsis  61.2    5e-12
gi|115453887|ref|NP_001050544.1|  Os03g0578200 [Oryza sativa (...  36.6    0.072 
gi|50399957|gb|AAT76345.1|  hypothetical protein [Oryza sativa (j  33.5    0.61 
gi|115439449|ref|NP_001044004.1|  Os01g0704200 [Oryza sativa (...  32.0    1.8   
gi|92897225|gb|ABE93586.1|  hypothetical protein MtrDRAFT_AC12...  30.4    5.2  
gi|22165093|gb|AAM93710.1|  hypothetical protein [Oryza sativa (j  30.4    5.2   
gi|114703609|emb|CAL46259.1|  cytidine deaminase [Paspalum simple  30.0    6.8  
gi|15240914|ref|NP_198660.1|  unknown protein [Arabidopsis tha...  30.0    6.8   
gi|27497473|emb|CAD59868.1|  reverse transcriptase [Cicer arietin  29.6    8.9

Alignments

 

>gi|42563913|ref|NP_187597.2|  unknown protein [Arabidopsis thaliana]
 gi|48310049|gb|AAT41743.1|  At3g09860 [Arabidopsis thaliana]
 gi|52218784|gb|AAU29462.1|  At3g09860 [Arabidopsis thaliana]
 gi|110742123|dbj|BAE98991.1|  hypothetical protein [Arabidopsis thaliana]
Length=98

 Score = 89.7 bits (221),  Expect = 7e-18
 Identities = 44/72 (61%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
 Frame = -1

Query  572  GDPGVPHASPDRFVNIWIGSAAFSALTWYQPLHVASL*PILIGMTKQLLFEQYHWKKATA  393
            GDPGVPHA  DRFVNIWIGSAAFS LTW  P ++  L        K +LFEQYHWKKA A
Sbjct  11   GDPGVPHADADRFVNIWIGSAAFSVLTWVNP-YMWQLSNQFNYHDKWMLFEQYHWKKARA  69

Query  392  KKHPYKFXVERV  357
            KK PY+F   ++
Sbjct  70   KKQPYEFKWNKI  81


>gi|6681333|gb|AAF23250.1|AC015985_8  unknown protein [Arabidopsis thaliana]
Length=102

 Score = 61.2 bits (147),  Expect(2) = 5e-12
 Identities = 26/31 (83%), Positives = 26/31 (83%), Gaps = 0/31 (0%)
 Frame = -1

Query  572  GDPGVPHASPDRFVNIWIGSAAFSALTWYQP  480
            GDPGVPHA  DRFVNIWIGSAAFS LTW  P
Sbjct  11   GDPGVPHADADRFVNIWIGSAAFSVLTWVNP  41


 Score = 29.3 bits (64),  Expect(2) = 5e-12
 Identities = 10/12 (83%), Positives = 11/12 (91%), Gaps = 0/12 (0%)
 Frame = -2

Query  487  INPYMWHLSNQF  452
            +NPYMW LSNQF
Sbjct  39   VNPYMWQLSNQF  50


>gi|115453887|ref|NP_001050544.1|  Os03g0578200 [Oryza sativa (japonica cultivar-group)]
 gi|108709478|gb|ABF97273.1|  expressed protein [Oryza sativa (japonica cultivar-group)]
 gi|113549015|dbj|BAF12458.1|  Os03g0578200 [Oryza sativa (japonica cultivar-group)]
Length=83

 Score = 36.6 bits (83),  Expect = 0.072
 Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
 Frame = -1

Query  572  GDPGVPHASPDRFVNIWIGSAAFSALTWYQ------PLHVASL*PILIGMTKQLLFEQYH  411
            GD GVPH+ P R V  W G+ A  A             ++ SL      MT  ++ +Q  
Sbjct  14   GDSGVPHSDPQRLVTTWTGAFALGAAACVHHHASALASNIKSLPHYWQDMT--MMLDQKR  71

Query  410  WKKATAKK  387
            WKK   KK
Sbjct  72   WKKILEKK  79


>gi|50399957|gb|AAT76345.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length=89

 Score = 33.5 bits (75),  Expect = 0.61
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 0/25 (0%)
 Frame = -1

Query  572  GDPGVPHASPDRFVNIWIGSAAFSA  498
            GD GVPH+ P R V  W G+ A  A
Sbjct  14   GDSGVPHSDPQRLVTTWTGAFALGA  38


>gi|115439449|ref|NP_001044004.1|  Os01g0704200 [Oryza sativa (japonica cultivar-group)]
 gi|113533535|dbj|BAF05918.1|  Os01g0704200 [Oryza sativa (japonica cultivar-group)]
Length=351

 Score = 32.0 bits (71),  Expect = 1.8
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -1

Query  491  WYQPLHVASL*PILIGMTKQLLFEQY--HWKKATAKKHPYKFXVERVH  354
            W  P   A+L P L+G+  Q  FEQY  H K  +    P  F + R+H
Sbjct  238  WTGPAASATLAPYLVGLVVQFAFEQYARHRKSPSWPVIPIIFKIYRLH  285


>gi|92897225|gb|ABE93586.1|  hypothetical protein MtrDRAFT_AC124952g33v1 [Medicago truncatula]
Length=376

 Score = 30.4 bits (67),  Expect = 5.2
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -1

Query  491  WYQPLHVASL*PILIGMTKQLLFEQY--HWKKATAKKHPYKFXVERVH  354
            W  P   A+L P L+G+  Q  FEQY  + K  +    P  F V R+H
Sbjct  263  WTGPAASATLAPYLVGIVVQFAFEQYARYRKSPSWSAIPLIFQVYRLH  310


>gi|22165093|gb|AAM93710.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length=700

 Score = 30.4 bits (67),  Expect = 5.2
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -3

Query  402  SNGKEASIQI*XGTSTWTRITGTCNIADRPVYFPLV-FLFV*ACSLISSLGKXDCTLL  232
            SNGK +   +  G+S WT    T   AD      +  F+ +  C ++S  G  DC LL
Sbjct  487  SNGKLSVYLLKRGSSVWTHCKTTSRDADLTEKINISGFVVLKRCFMVSDAGSFDCFLL  544


>gi|114703609|emb|CAL46259.1|  cytidine deaminase [Paspalum simplex]
Length=148

 Score = 30.0 bits (66),  Expect = 6.8
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = +1

Query  259  TTYQRACLHKQKN*GKVDRPICNITSPCDPCPCTRSTLNLYG  384
            T  + AC    K  GK++   C I + C+PCP     + L+G
Sbjct  85   TAIREAC----KKLGKIELSDCEIYASCEPCPMCFGAVYLFG  122


>gi|15240914|ref|NP_198660.1|  unknown protein [Arabidopsis thaliana]
 gi|9758822|dbj|BAB09356.1|  unnamed protein product [Arabidopsis thaliana]
Length=133

 Score = 30.0 bits (66),  Expect = 6.8
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -3

Query  525  MDRVSCFLRSHLVSTLTCGISLTNFNWHDKATVI*AIPLEESN  397
            M+R+SCFL   LV  L  G+S  N  W++K TV     L  +N
Sbjct  1    MNRLSCFL---LVIGLCIGLSNANLIWNEKNTVFFKSSLGRNN  40


>gi|27497473|emb|CAD59868.1|  reverse transcriptase [Cicer arietinum]
Length=37

 Score = 29.6 bits (65),  Expect = 8.9
 Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%)
 Frame = +1

Query  16  TXHAPGRHGGRG  51
           T HAPGRHGGRG
Sbjct  6   TSHAPGRHGGRG  17

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 372
Number of extensions: 3
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 611
Length of database: 101054579
Length adjustment: 108
Effective length of query: 503
Effective length of database: 70452887
Effective search space: 6693024265
Effective search space used: 6693024265
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 65 (29.6 bits)