Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1169014841-16347-59784451645.BLASTQ4 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,460,989 sequences; 1,533,424,333 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig374 Length=572
Score E Sequences producing significant alignments: (Bits) Value gi|110742192|dbj|BAE99023.1| tubulin alpha-2/alpha-4 chain [Arab 288 7e-78 gi|56481443|gb|AAV92352.1| alpha tubulin 1 [Pseudotsuga menzi... 288 7e-78 gi|15220329|ref|NP_171974.1| TUA4 [Arabidopsis thaliana] >gi|... 288 7e-78 gi|29423813|gb|AAO73546.1| alpha-tubulin [Ceratopteris richar... 288 9e-78 gi|17402471|emb|CAD13178.1| alpha-tubulin [Nicotiana tabacum] 287 2e-77 gi|17402467|emb|CAD13176.1| alpha-tubulin [Nicotiana tabacum] 287 2e-77 gi|77745465|gb|ABB02631.1| unknown [Solanum tuberosum] 287 2e-77 gi|30683070|ref|NP_849388.1| TUA6 [Arabidopsis thaliana] 287 2e-77 gi|15233627|ref|NP_193232.1| TUA6 [Arabidopsis thaliana] >gi|... 287 2e-77 gi|464849|sp|P33629|TBA_PRUDU Tubulin alpha chain >gi|20413|e... 287 2e-77 gi|8928432|sp|Q9ZRR5|TBA3_HORVU Tubulin alpha-3 chain >gi|416... 287 2e-77 gi|17402469|emb|CAD13177.1| alpha-tubulin [Nicotiana tabacum] 286 3e-77 gi|54036493|sp|Q6VAG0|TBA2_GOSHI Tubulin alpha-2 chain (Alpha... 286 3e-77 gi|54036492|sp|Q6VAF9|TBA4_GOSHI Tubulin alpha-4 chain (Alpha... 286 3e-77 gi|91940067|gb|ABE66388.1| alpha-tubulin [Striga asiatica] 286 4e-77 gi|23452339|gb|AAN33000.1| alpha-tubulin 4 [Gossypium hirsutum] 286 4e-77 gi|27819095|gb|AAO23139.1| alpha tubulin [Populus tremuloides] 286 4e-77 gi|29124983|gb|AAO63781.1| alpha-tubulin 1 [Populus tremuloides] 286 4e-77 gi|25396550|dbj|BAC24800.1| alpha tubulin [Physcomitrella patens 286 5e-77 gi|49036476|sp|Q9FT36|TBA_DAUCA Tubulin alpha chain >gi|99659... 285 6e-77 gi|92896308|gb|ABE93145.1| Cell division protein FtsZ [Medicago 285 8e-77 gi|6723478|emb|CAB66336.1| alpha-tubulin [Betula pendula] 285 8e-77 gi|15029368|gb|AAK81858.1|AF394915_1 alpha tubulin subunit [Rosa 285 8e-77 gi|54036494|sp|Q6VAG1|TBA1_GOSHI Tubulin alpha-1 chain (Alpha... 285 8e-77 gi|1174592|sp|P46259|TBA1_PEA Tubulin alpha-1 chain >gi|525332|g 285 8e-77 gi|16226462|gb|AAL16174.1|AF428406_1 AT4g14960/dl3520c [Arabidop 285 1e-76 gi|115484939|ref|NP_001067613.1| Os11g0247300 [Oryza sativa (... 285 1e-76 gi|51988174|emb|CAE52515.1| alpha tubulin [Setaria viridis] 284 2e-76 gi|1556446|gb|AAB08791.1| alpha tubulin [Hordeum vulgare] 284 2e-76 gi|11967906|dbj|BAB19779.1| alpha tubulin [Nicotiana tabacum] 284 2e-76 gi|8928408|sp|Q9ZRB7|TBA_WHEAT Tubulin alpha chain >gi|409827... 284 2e-76 gi|8928422|sp|Q96460|TBA2_HORVU Tubulin alpha-2 chain >gi|161... 284 2e-76 gi|135411|sp|P14641|TBA2_MAIZE Tubulin alpha-2 chain (Alpha-2... 283 2e-76 gi|3163946|emb|CAA06619.1| alpha-tubulin 1 [Eleusine indica] 283 2e-76 gi|6094429|sp|O22347|TBA1_ELEIN Tubulin alpha-1 chain (Alpha-... 283 2e-76 gi|135398|sp|P14640|TBA1_MAIZE Tubulin alpha-1 chain (Alpha-1... 283 2e-76 gi|34733239|gb|AAQ81585.1| putative tubulin alpha-2/alpha-4 chai 283 3e-76 gi|60476110|gb|AAX21196.1| putative alpha-tubulin [Solanum betac 283 4e-76 gi|464840|sp|P33623|TBA1_ANEPH Tubulin alpha-1 chain >gi|2964... 283 4e-76 gi|1136122|emb|CAA62917.1| alfa-tubulin [Oryza sativa (japonica 282 5e-76 gi|110617748|gb|ABG78593.1| alpha-tubulin [Oryza sativa (japonic 281 9e-76 gi|8928409|sp|Q9ZRJ4|TBA_CHLVU Tubulin alpha chain >gi|416222... 281 9e-76 gi|108710848|gb|ABF98643.1| Tubulin alpha-1 chain, putative, ... 281 1e-75 gi|115455063|ref|NP_001051132.1| Os03g0726100 [Oryza sativa (... 281 1e-75 gi|25396545|dbj|BAC24799.1| alpha tubulin [Physcomitrella patens 280 3e-75 gi|2613143|gb|AAB84298.1| tubulin [Oryza sativa] 279 4e-75 gi|2625156|gb|AAB86649.1| alpha-tubulin [Chloromonas sp. ANT1] 278 1e-74 gi|63126536|gb|AAX63396.1| alpha-tubulin [Haematococcus pluviali 278 1e-74 gi|1136120|emb|CAA62916.1| alpha-tubulin [Oryza sativa (japonica 278 1e-74 gi|135394|sp|P09204|TBA1_CHLRE Tubulin alpha-1 chain >gi|1674... 277 2e-74 gi|135404|sp|P11481|TBA1_VOLCA Tubulin alpha-1/alpha-2 chain ... 277 2e-74 gi|135409|sp|P09205|TBA2_CHLRE Tubulin alpha-2 chain >gi|167450| 277 2e-74 gi|2625154|gb|AAB86648.1| alpha-tubulin [Chloromonas sp. ANT3] 276 5e-74 gi|99082883|gb|ABC59068.2| alpha tubulin 1 [Camellia sinensis] 275 8e-74 gi|135417|sp|P22275|TBA3_MAIZE Tubulin alpha-3 chain (Alpha-3... 274 2e-73 gi|15241168|ref|NP_197478.1| TUA3 [Arabidopsis thaliana] >gi|... 270 3e-72 gi|57867865|gb|AAW57312.1| alpha-tubulin [Ceratopteris richardii 268 8e-72 gi|93359562|gb|ABF13307.1| alpha-tubulin [Phaseolus vulgaris] 268 1e-71 gi|115472953|ref|NP_001060075.1| Os07g0574800 [Oryza sativa (... 268 1e-71 gi|7271241|emb|CAB77671.1| alpha-tubulin [Miscanthus sinensis f. 267 2e-71 gi|51988172|emb|CAE52514.1| alpha tubulin [Setaria viridis] 267 2e-71 gi|83283967|gb|ABC01891.1| tubulin alpha-5 chain-like protein [S 266 3e-71 gi|76573359|gb|ABA46784.1| alpha-tubulin-like protein [Solanum t 266 3e-71 gi|82400128|gb|ABB72803.1| alpha-tubulin-like protein [Solanum t 266 5e-71 gi|62546341|gb|AAX86047.1| tubulin A [Glycine max] 265 8e-71 gi|37936218|emb|CAD26886.1| alpha-tubulin [Miscanthus sinensis] 265 8e-71 gi|37936212|emb|CAD24766.1| alpha-tubulin [Miscanthus sinensis] 265 8e-71 gi|6094431|sp|O22349|TBA3_ELEIN Tubulin alpha-3 chain (Alpha-... 265 8e-71 gi|464846|sp|P33627|TBA6_MAIZE Tubulin alpha-6 chain (Alpha-6... 265 8e-71 gi|37936220|emb|CAD26887.1| alpha-tubulin [Miscanthus sinensis] 264 1e-70 gi|37936214|emb|CAD24767.1| alpha-tubulin [Miscanthus floridulus 264 1e-70 gi|37936232|emb|CAD26893.1| alpha-tubulin [Miscanthus floridulus 264 1e-70 gi|8928419|sp|Q43473|TBA1_HORVU Tubulin alpha-1 chain >gi|147... 263 2e-70 gi|37936228|emb|CAD26891.1| alpha-tubulin [Miscanthus floridulus 263 3e-70 gi|37936210|emb|CAD24765.1| alpha-tubulin [Miscanthus sinensis] 263 4e-70 gi|49659780|gb|AAT68202.1| alpha 1 tubulin [Cynodon dactylon] 262 5e-70 gi|7271243|emb|CAB77672.1| alpha-tubulin [Miscanthus transmorris 262 5e-70 gi|37936226|emb|CAD26890.1| alpha-tubulin [Miscanthus sinensis v 262 7e-70 gi|401161|sp|Q02245|TBA5_MAIZE Tubulin alpha-5 chain (Alpha-5... 262 7e-70 gi|37936224|emb|CAD26889.1| alpha-tubulin [Miscanthus transmorri 261 1e-69 gi|8928404|sp|Q38771|TBA_AVESA Tubulin alpha chain >gi|127920... 261 1e-69 gi|116059394|emb|CAL55101.1| Beta tubulin (ISS) [Ostreococcus ta 260 2e-69 gi|37936230|emb|CAD26892.1| alpha-tubulin [Miscanthus floridulus 260 2e-69 gi|37936222|emb|CAD26888.1| alpha-tubulin [Miscanthus transmorri 259 6e-69 gi|15217737|ref|NP_176654.1| TUA1 (ALPHA-1 TUBULIN) [Arabidop... 259 6e-69 gi|226261|prf||1503274A alpha1 tubulin 259 6e-69 gi|77999295|gb|ABB16994.1| unknown [Solanum tuberosum] 258 1e-68 gi|37936216|emb|CAD24768.1| alpha-tubulin [Miscanthus floridulus 258 1e-68 gi|6094430|sp|O22348|TBA2_ELEIN Tubulin alpha-2 chain (Alpha-... 254 1e-67 gi|76257855|gb|ABA41245.1| alpha-tubulin [Mesostigma viride] 253 3e-67 gi|115451599|ref|NP_001049400.1| Os03g0219300 [Oryza sativa (... 253 4e-67 gi|76257853|gb|ABA41244.1| alpha-tubulin [Mesostigma viride] 251 1e-66 gi|116060752|emb|CAL57230.1| Beta tubulin (ISS) [Ostreococcus ta 249 5e-66 gi|76257847|gb|ABA41241.1| alpha-tubulin [Coleochaete scutata] 248 1e-65 gi|25264668|emb|CAD32379.1| tubulin alpha [Oryza sativa (indica 248 1e-65 gi|76257851|gb|ABA41243.1| alpha-tubulin [Mantoniella squamata] 247 2e-65 gi|76257849|gb|ABA41242.1| alpha-tubulin [Mantoniella squamata] 247 2e-65 gi|76257861|gb|ABA41248.1| alpha-tubulin [Pterosperma cristatum] 246 5e-65 gi|76257863|gb|ABA41249.1| alpha-tubulin [Pterosperma cristatum] 243 3e-64 gi|92881795|gb|ABE86411.1| Cell division protein FtsZ [Medicago 242 8e-64
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 16, 2007 5:53 PM Number of letters in database: 101,065,385 Number of sequences in database: 283,397 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283397 Number of Hits to DB: 439 Number of extensions: 6 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 572 Length of database: 101065385 Length adjustment: 107 Effective length of query: 465 Effective length of database: 70741906 Effective search space: 5871578198 Effective search space used: 5871578198 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 64 (29.3 bits)