Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1169016227-2544-73715937286.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,460,989 sequences; 1,533,424,333 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig397 Length=748
Score E Sequences producing significant alignments: (Bits) Value gi|20218809|emb|CAC84489.1| putative translation factor [Pinus p 217 3e-56 gi|15221783|ref|NP_175831.1| translation initiation factor [A... 215 2e-55 gi|113952523|gb|ABI48954.1| putative protein translation factor 214 2e-55 gi|15236989|ref|NP_194443.1| translation initiation factor [A... 212 1e-54 gi|115464699|ref|NP_001055949.1| Os05g0498400 [Oryza sativa (... 211 2e-54 gi|15239733|ref|NP_200287.1| translation initiation factor [A... 211 3e-54 gi|11135352|sp|Q9SQF4|SUI1_BRAOL Protein translation factor S... 209 1e-53 gi|53791638|dbj|BAD53005.1| putative translation initiation f... 208 2e-53 gi|115472489|ref|NP_001059843.1| Os07g0529800 [Oryza sativa (... 208 2e-53 gi|92892132|gb|ABE91150.1| translation initiation factor SUI1 [M 207 3e-53 gi|3334346|sp|O48650|SUI1_SALBA Protein translation factor SU... 207 3e-53 gi|11135350|sp|Q9SM41|SUI1_SPOST Protein translation factor S... 207 4e-53 gi|77745501|gb|ABB02649.1| unknown [Solanum tuberosum] 206 6e-53 gi|3024657|sp|P56330|SUI1_MAIZE Protein translation factor SU... 206 8e-53 gi|28193048|emb|CAD58628.1| SUI1 protein [Coffea arabica] 203 5e-52 gi|21070377|gb|AAM34279.1|AF508969_1 translation initiation fact 202 1e-51 gi|28193050|emb|CAD58629.1| SUI1 protein [Coffea arabica] 201 2e-51 gi|21842314|gb|AAM77753.1|AF521961_1 translation initiation fact 186 1e-46 gi|115440449|ref|NP_001044504.1| Os01g0794500 [Oryza sativa (... 184 2e-46 gi|7388263|sp|O82569|SUI1_PIMBR Protein translation factor SU... 184 4e-46 gi|18423691|ref|NP_568818.1| translation initiation factor [A... 174 4e-43 gi|5918208|emb|CAB56294.1| putative protein translation factor [ 168 2e-41 gi|116312010|emb|CAJ86367.1| OSIGBa0117N13.11 [Oryza sativa (... 143 6e-34 gi|115460710|ref|NP_001053955.1| Os04g0627900 [Oryza sativa (... 130 4e-30 gi|39546233|emb|CAE04242.3| OSJNBa0089N06.3 [Oryza sativa (japon 130 4e-30 gi|48093518|gb|AAT40136.1| putative translation initiation facto 117 5e-26 gi|116055832|emb|CAL57917.1| Translation initiation factor 1 ... 106 1e-22 gi|499888|gb|AAA53420.1| ORF 79.7 1e-14 gi|116060460|emb|CAL55796.1| Density-regulated protein relate... 36.6 0.11 gi|115471541|ref|NP_001059369.1| Os07g0277600 [Oryza sativa (... 36.2 0.14 gi|13775111|gb|AAK39132.1|AF369792_1 bZIP transcription factor 6 32.3 2.0 gi|94503774|gb|ABF29696.1| abscisic acid responsive element-b... 31.2 4.4 gi|15228789|ref|NP_191158.1| unknown protein [Arabidopsis tha... 30.8 5.8 gi|26452343|dbj|BAC43257.1| unknown protein [Arabidopsis thalian 30.8 5.8
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 16, 2007 5:53 PM Number of letters in database: 101,065,385 Number of sequences in database: 283,397 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283397 Number of Hits to DB: 613 Number of extensions: 2 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 748 Length of database: 101065385 Length adjustment: 110 Effective length of query: 638 Effective length of database: 69891715 Effective search space: 9714948385 Effective search space used: 9714948385 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 66 (30.0 bits)