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BLASTX 2.2.15 [Oct-15-2006] 
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman 
(1997), "Gapped BLAST and PSI-BLAST: a new generation of 
protein database search programs", Nucleic Acids Res. 25:3389-3402.

RID: 1169017061-18387-110775730721.BLASTQ4


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
           4,460,989 sequences; 1,533,424,333 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs
Taxonomy reports

Query=  Contig408
Length=602

Distribution of 198 Blast Hits on the Query Sequence


                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|15220930|ref|NP_175778.1|  RPT1A; ATPase [Arabidopsis thali...   259    3e-88 UniGene infoGene info
gi|3914449|sp|O64982|PRS7_PRUPE  26S protease regulatory subun...   259    3e-88
gi|49175787|gb|AAT52191.1|  26S proteasome ATPase subunit [Pisum    259    3e-88
gi|115466876|ref|NP_001057037.1|  Os06g0192600 [Oryza sativa (...   259    9e-88 Gene info
gi|2492519|sp|Q41365|PRS7_SPIOL  26S protease regulatory subun...   259    9e-88
gi|115449095|ref|NP_001048327.1|  Os02g0784700 [Oryza sativa (...   259    9e-88 Gene info
gi|6652878|gb|AAF22521.1|AF123390_1  26S proteasome AAA-ATPase su   259    1e-87 UniGene info
gi|37932204|gb|AAP72958.1|  26S proteasome subunit 7-like protein   257    2e-87
gi|37932196|gb|AAP72957.1|  26S proteasome subunit 7-like protein   257    2e-87
gi|15220933|ref|NP_175781.1|  ATP binding / ATPase/ hydrolase/...   242    3e-81 UniGene infoGene info
gi|6056389|gb|AAF02853.1|AC009324_2  Putative 26S proteasome ATPa   242    3e-81
gi|89114282|gb|ABD61729.1|  26S proteasome ATPase subunit [Lup...   169    5e-61
gi|92873672|gb|ABE82075.1|  AAA-protein subdomain [Medicago trunc   155    3e-57
gi|116000720|emb|CAL50400.1|  26S proteasome subunit P45 famil...   150    5e-54
gi|11045086|emb|CAC14432.1|  26S proteasome subunit 4-like protei   177    1e-53
gi|13937244|gb|AAK50114.1|AF372977_1  At2g20140/T2G17.6 [Arabidop   177    2e-53 UniGene info
gi|15225307|ref|NP_179604.1|  ATP binding / ATPase/ hydrolase/...   177    2e-53 UniGene infoGene info
gi|6652880|gb|AAF22522.1|AF123391_1  26S proteasome AAA-ATPase su   177    2e-53 UniGene info
gi|15235544|ref|NP_194633.1|  RPT2A; ATPase [Arabidopsis thali...   177    2e-53 UniGene infoGene info
gi|115474241|ref|NP_001060719.1|  Os07g0691800 [Oryza sativa (...   176    6e-53 Gene info
gi|115452485|ref|NP_001049843.1|  Os03g0298400 [Oryza sativa (...   176    6e-53 Gene info
gi|556558|dbj|BAA04615.1|  rice homologue of Tat binding prote...   176    6e-53 UniGene info
gi|6752880|gb|AAF27916.1|AF220199_1  26S proteasome regulatory su   181    6e-53 UniGene info
gi|87241031|gb|ABD32889.1|  AAA ATPase; 26S proteasome subunit P4   177    8e-53
gi|116056475|emb|CAL52764.1|  26S proteasome regulatory comple...   180    8e-53
gi|21593177|gb|AAM65126.1|  26S proteasome subunit 4 [Arabidopsis   175    1e-52 UniGene info
gi|15241241|ref|NP_197500.1|  RPT6A; ATP binding / ATPase/ hyd...   180    1e-52 UniGene infoGene info
gi|18420092|ref|NP_568389.1|  ATSUG1; ATPase [Arabidopsis thal...   180    1e-52 UniGene infoGene info
gi|6652888|gb|AAF22526.1|AF123395_1  26S proteasome AAA-ATPase su   180    1e-52 UniGene info
gi|11993907|gb|AAG42150.1|  26S proteasome RPT6a subunit [Dactyli   181    1e-52
gi|115444937|ref|NP_001046248.1|  Os02g0205300 [Oryza sativa (...   181    1e-52 Gene info
gi|17385640|dbj|BAA87070.2|  TAT-binding protein homolog [Matrica   181    2e-52
gi|115468800|ref|NP_001057999.1|  Os06g0600100 [Oryza sativa (...   179    3e-52 Gene info
gi|92867387|gb|ABE77697.1|  AAA ATPase, central region; 26S pr...   182    3e-52
gi|15237159|ref|NP_200637.1|  RPT3; ATPase [Arabidopsis thalia...   182    3e-52 UniGene infoGene info
gi|116056700|emb|CAL52989.1|  26S proteasome regulatory comple...   179    5e-52
gi|18479040|gb|AAL73395.1|AF432345_1  26S proteasome regulatory s   173    8e-52
gi|77745479|gb|ABB02638.1|  26S proteasome subunit 4-like [Solanu   172    8e-52
gi|115445841|ref|NP_001046700.1|  Os02g0325100 [Oryza sativa (...   180    1e-51 Gene info
gi|17298145|dbj|BAB78494.1|  26S proteasome regulatory particl...   180    1e-51 UniGene info
gi|15219503|ref|NP_175120.1|  ATP binding / ATPase/ hydrolase/...   182    1e-51 UniGene infoGene info
gi|1709798|sp|P54778|PRS6B_SOLTU  26S protease regulatory subu...   180    2e-51
gi|115468870|ref|NP_001058034.1|  Os06g0607800 [Oryza sativa (...   181    3e-51 Gene info
gi|15239140|ref|NP_199115.1|  RPT4A; ATPase [Arabidopsis thali...   181    3e-51 UniGene infoGene info
gi|17298147|dbj|BAB78495.1|  26S proteasome regulatory particl...   181    3e-51 UniGene info
gi|42602319|gb|AAS21759.1|  26S proteasome regulatory complex ATP   179    3e-51 UniGene infoGene info
gi|50660432|gb|AAT80904.1|  26S proteasome ATPase subunit [Lemna    135    3e-51
gi|92870338|gb|ABE79655.1|  AAA ATPase; 26S proteasome subunit...   181    4e-51
gi|24745880|dbj|BAC23035.1|  26S proteasome AAA-ATPase subunit...   182    4e-51 UniGene info
gi|115444877|ref|NP_001046218.1|  Os02g0199900 [Oryza sativa (...   181    1e-50 Gene info
gi|6599051|emb|CAB63651.1|  26S proteasome subunit 8; Tat binding   170    7e-50
gi|556560|dbj|BAA04614.1|  rice homologue of Tat binding prote...   172    1e-49 UniGene info
gi|115449297|ref|NP_001048428.1|  Os02g0803700 [Oryza sativa (...   172    1e-49 Gene info
gi|92871663|gb|ABE80601.1|  AAA ATPase; 26S proteasome subunit...   172    1e-49
gi|51090591|dbj|BAD36043.1|  putative 26S proteasome regulator...   172    1e-49
gi|115466690|ref|NP_001056944.1|  Os06g0173100 [Oryza sativa (...   172    2e-49 Gene info
gi|1729860|sp|P54776|PRS6A_LYCES  26S protease regulatory subu...   172    2e-49 Gene info
gi|12697589|dbj|BAB21595.1|  Tat binding protein like protein [Br   171    3e-49
gi|15230005|ref|NP_187204.1|  RPT5A; ATPase/ calmodulin bindin...   171    3e-49 UniGene infoGene info
gi|3024434|sp|O23894|PRS6A_BRACM  26S protease regulatory subu...   171    3e-49
gi|5669047|gb|AAD46145.1|  19S proteasome regulatory complex s...   171    4e-49 UniGene info
gi|15217431|ref|NP_172384.1|  ATPase/ calmodulin binding [Arab...   170    1e-48 UniGene infoGene info
gi|3024431|sp|O04019|PRS6A_ARATH  26S protease regulatory subu...   170    1e-48
gi|32400784|gb|AAP80624.1|AF475102_1  tat binding protein [Tritic   171    1e-48 UniGene infoGene info
gi|23197864|gb|AAN15459.1|  26S proteasome AAA-ATPase subunit RPT   168    3e-48 UniGene info
gi|116058503|emb|CAL53692.1|  26S proteasome regulatory comple...   162    7e-47
gi|115457548|ref|NP_001052374.1|  Os04g0284600 [Oryza sativa (...   157    7e-44 Gene info
gi|116309138|emb|CAH66240.1|  OSIGBa0145C02.5 [Oryza sativa (indi   156    9e-44
gi|116000717|emb|CAL50397.1|  AAA+-type ATPase (ISS) [Ostreococcu   125    2e-36
gi|7141245|gb|AAF37267.1|AF220406_1  26S proteasome regulatory AT   150    4e-36
gi|91806862|gb|ABE66158.1|  FtsH protease [Arabidopsis thaliana]    121    1e-35 UniGene info
gi|18417611|ref|NP_568311.1|  FTSH6; ATP-dependent peptidase/ ...   121    1e-35 UniGene infoGene info
gi|115480661|ref|NP_001063924.1|  Os09g0560200 [Oryza sativa (...   136    1e-35 Gene info
gi|17298165|dbj|BAB78504.1|  26S proteasome regulatory particl...   125    1e-35 UniGene info
gi|3808101|emb|CAA09935.1|  chloroplast protease [Capsicum annuum   122    4e-35
gi|4325041|gb|AAD17230.1|  FtsH-like protein Pftf precursor [Nico   122    4e-35 UniGene info
gi|87240674|gb|ABD32532.1|  Peptidase S26A, signal peptidase I...   123    4e-35
gi|30684767|ref|NP_850156.1|  VAR2 (VARIEGATED 2); ATP-depende...   122    5e-35 UniGene infoGene info
gi|84468324|dbj|BAE71245.1|  putative zinc dependent protease [Tr   122    6e-35
gi|52075838|dbj|BAD45446.1|  putative FtsH-like protein Pftf p...   123    6e-35
gi|115469444|ref|NP_001058321.1|  Os06g0669400 [Oryza sativa (...   123    6e-35 Gene info
gi|52075839|dbj|BAD45447.1|  putative chloroplast protease [Or...   123    7e-35
gi|84468286|dbj|BAE71226.1|  putative zinc dependent protease [Tr   122    1e-34
gi|66954652|dbj|BAD99306.1|  FtsH protease [Solanum lycopersicum]   120    2e-34 UniGene infoGene info
gi|18422193|ref|NP_568604.1|  VAR1 (VARIEGATED 1); ATP-depende...   127    2e-34 UniGene infoGene info
gi|42561751|ref|NP_563766.3|  FTSH8; ATP-dependent peptidase/ ...   122    2e-34 UniGene infoGene info
gi|6692685|gb|AAF24819.1|AC007592_12  F12K11.22 [Arabidopsis thal   122    2e-34
gi|21954076|gb|AAK76625.2|  putative FtsH protease [Arabidopsis t   122    2e-34 UniGene info
gi|17865457|sp|O82150|FTSH_TOBAC  Cell division protease ftsH ...   127    9e-34
gi|17865463|sp|Q9BAE0|FTSH_MEDSA  Cell division protease ftsH ...   126    2e-33
gi|18402995|ref|NP_564563.1|  FTSH1; ATP-dependent peptidase/ ...   127    3e-33 UniGene infoGene info
gi|116059740|emb|CAL55447.1|  26S proteasome regulatory comple...   124    3e-33
gi|115470052|ref|NP_001058625.1|  Os06g0725900 [Oryza sativa (...   124    3e-33 Gene info
gi|2492515|sp|Q39444|FTSH_CAPAN  Cell division protease ftsH h...   125    1e-32
gi|2077957|emb|CAA73318.1|  ATPase [Arabidopsis thaliana]           125    2e-32 UniGene info
gi|38606517|emb|CAE05991.3|  OSJNBa0016O02.1 [Oryza sativa (japon   117    2e-32 Gene info
gi|116309721|emb|CAH66766.1|  OSIGBa0115M15.4 [Oryza sativa (indi   116    2e-32
gi|17380916|gb|AAL36270.1|  putative AAA-type ATPase [Arabidopsis   122    3e-32 UniGene info
gi|30684118|ref|NP_850129.1|  FTSH3; ATP-dependent peptidase/ ...   122    3e-32 UniGene infoGene info
gi|3461848|gb|AAC33234.1|  putative AAA-type ATPase [Arabidopsis    122    3e-32
Alignments

>gi|15220930|ref|NP_175778.1| UniGene infoGene info RPT1A; ATPase [Arabidopsis thaliana]
 gi|28558169|sp|Q9SSB5|PRS7_ARATH Gene info 26S protease regulatory subunit 7 (26S proteasome subunit 7) 
(26S proteasome AAA-ATPase subunit RPT1a) (Regulatory particle 
triple-A ATPase subunit 1a)
 gi|6056388|gb|AAF02852.1|AC009324_1 Gene info 26S proteasome ATPase subunit [Arabidopsis thaliana]
 gi|12324021|gb|AAG51970.1|AC024260_8 Gene info 26S proteasome ATPase subunit; 3861-6264 [Arabidopsis thaliana]
 gi|17065568|gb|AAL32938.1| UniGene infoGene info 26S proteasome ATPase subunit [Arabidopsis thaliana]
 gi|23197722|gb|AAN15388.1| UniGene infoGene info 26S proteasome ATPase subunit [Arabidopsis thaliana]
Length=426

 Score =  259 bits (661),  Expect(2) = 3e-88
 Identities = 128/128 (100%), Positives = 128/128 (100%), Gaps = 0/128 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA
Sbjct  198  GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  257

Query  189  RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  368
            RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP
Sbjct  258  RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  317

Query  369  DTLDPALL  392
            DTLDPALL
Sbjct  318  DTLDPALL  325


 Score = 86.7 bits (213),  Expect(2) = 3e-88
 Identities = 41/46 (89%), Positives = 42/46 (91%), Gaps = 0/46 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIELLTPLCP  531
            RPGRLDRKVEFGLPDLESRTQIFKIHTRTMN ERDI+ ELL  LCP
Sbjct  326  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCP  371


>gi|3914449|sp|O64982|PRS7_PRUPE  26S protease regulatory subunit 7 (26S proteasome subunit 7) 
(26S proteasome AAA-ATPase subunit RPT1) (Regulatory particle 
triple-A ATPase subunit 1)
 gi|3172331|gb|AAC18523.1|  26S proteasome subunit 7 [Prunus persica]
Length=425

 Score =  259 bits (661),  Expect(2) = 3e-88
 Identities = 128/128 (100%), Positives = 128/128 (100%), Gaps = 0/128 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA
Sbjct  197  GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  256

Query  189  RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  368
            RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP
Sbjct  257  RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  316

Query  369  DTLDPALL  392
            DTLDPALL
Sbjct  317  DTLDPALL  324


 Score = 86.7 bits (213),  Expect(2) = 3e-88
 Identities = 41/46 (89%), Positives = 42/46 (91%), Gaps = 0/46 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIELLTPLCP  531
            RPGRLDRKVEFGLPDLESRTQIFKIHTRTMN ERDI+ ELL  LCP
Sbjct  325  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCP  370


>gi|49175787|gb|AAT52191.1|  26S proteasome ATPase subunit [Pisum sativum]
Length=211

 Score =  259 bits (661),  Expect(2) = 3e-88
 Identities = 128/128 (100%), Positives = 128/128 (100%), Gaps = 0/128 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA
Sbjct  36   GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  95

Query  189  RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  368
            RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP
Sbjct  96   RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  155

Query  369  DTLDPALL  392
            DTLDPALL
Sbjct  156  DTLDPALL  163


 Score = 86.7 bits (213),  Expect(2) = 3e-88
 Identities = 41/46 (89%), Positives = 42/46 (91%), Gaps = 0/46 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIELLTPLCP  531
            RPGRLDRKVEFGLPDLESRTQIFKIHTRTMN ERDI+ ELL  LCP
Sbjct  164  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCP  209


>gi|115466876|ref|NP_001057037.1| Gene info Os06g0192600 [Oryza sativa (japonica cultivar-group)]
 gi|28558165|sp|Q9FXT9|PRS7_ORYSA  26S protease regulatory subunit 7 (26S proteasome subunit 7) 
(26S proteasome AAA-ATPase subunit RPT1) (Regulatory particle 
triple-A ATPase subunit 1)
 gi|11094190|dbj|BAB17624.1| UniGene infoGene info 26S proteasome regulatory particle triple-A ATPase subunit1 [Oryza 
sativa (japonica cultivar-group)]
 gi|47497255|dbj|BAD19299.1| Gene info 26S proteasome regulatory particle triple-A ATPase subunit1 [Oryza 
sativa (japonica cultivar-group)]
 gi|51090788|dbj|BAD35266.1| Gene info 26S protease regulatory subunit 7 [Oryza sativa (japonica cultivar-group)]
 gi|51091125|dbj|BAD35822.1| Gene info 26S protease regulatory subunit 7 [Oryza sativa (japonica cultivar-group)]
 gi|113595077|dbj|BAF18951.1| Gene info Os06g0192600 [Oryza sativa (japonica cultivar-group)]
Length=426

 Score =  259 bits (661),  Expect(2) = 9e-88
 Identities = 128/128 (100%), Positives = 128/128 (100%), Gaps = 0/128 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA
Sbjct  198  GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  257

Query  189  RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  368
            RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP
Sbjct  258  RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  317

Query  369  DTLDPALL  392
            DTLDPALL
Sbjct  318  DTLDPALL  325


 Score = 85.1 bits (209),  Expect(2) = 9e-88
 Identities = 40/46 (86%), Positives = 41/46 (89%), Gaps = 0/46 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIELLTPLCP  531
            RPGRLDRKVEFGLPDLE RTQIFKIHTRTMN ERDI+ ELL  LCP
Sbjct  326  RPGRLDRKVEFGLPDLEGRTQIFKIHTRTMNCERDIRFELLARLCP  371


>gi|2492519|sp|Q41365|PRS7_SPIOL  26S protease regulatory subunit 7 (26S proteasome subunit 7) 
(26S proteasome AAA-ATPase subunit RPT1) (Regulatory particle 
triple-A ATPase subunit 1)
 gi|1395191|dbj|BAA13021.1|  26S proteasome ATPase subunit [Spinacia oleracea]
Length=426

 Score =  259 bits (661),  Expect(2) = 9e-88
 Identities = 128/128 (100%), Positives = 128/128 (100%), Gaps = 0/128 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA
Sbjct  198  GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  257

Query  189  RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  368
            RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP
Sbjct  258  RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  317

Query  369  DTLDPALL  392
            DTLDPALL
Sbjct  318  DTLDPALL  325


 Score = 85.1 bits (209),  Expect(2) = 9e-88
 Identities = 40/46 (86%), Positives = 41/46 (89%), Gaps = 0/46 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIELLTPLCP  531
            RPGRLDRKVEFGLPDLE RTQIFKIHTRTMN ERDI+ ELL  LCP
Sbjct  326  RPGRLDRKVEFGLPDLEGRTQIFKIHTRTMNCERDIRFELLARLCP  371


>gi|115449095|ref|NP_001048327.1| Gene info Os02g0784700 [Oryza sativa (japonica cultivar-group)]
 gi|17298143|dbj|BAB78493.1| UniGene infoGene info 26S proteasome regulatory particle triple-A ATPase subunit1b 
[Oryza sativa (japonica cultivar-group)]
 gi|113537858|dbj|BAF10241.1| Gene info Os02g0784700 [Oryza sativa (japonica cultivar-group)]
Length=235

 Score =  259 bits (661),  Expect(2) = 9e-88
 Identities = 128/128 (100%), Positives = 128/128 (100%), Gaps = 0/128 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA
Sbjct  7    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  66

Query  189  RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  368
            RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP
Sbjct  67   RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  126

Query  369  DTLDPALL  392
            DTLDPALL
Sbjct  127  DTLDPALL  134


 Score = 85.1 bits (209),  Expect(2) = 9e-88
 Identities = 40/46 (86%), Positives = 41/46 (89%), Gaps = 0/46 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIELLTPLCP  531
            RPGRLDRKVEFGLPDLE RTQIFKIHTRTMN ERDI+ ELL  LCP
Sbjct  135  RPGRLDRKVEFGLPDLEGRTQIFKIHTRTMNCERDIRFELLARLCP  180


>gi|6652878|gb|AAF22521.1|AF123390_1 UniGene info 26S proteasome AAA-ATPase subunit RPT1a [Arabidopsis thaliana]
Length=426

 Score =  259 bits (663),  Expect(2) = 1e-87
 Identities = 129/130 (99%), Positives = 129/130 (99%), Gaps = 0/130 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA
Sbjct  198  GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  257

Query  189  RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  368
            RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP
Sbjct  258  RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  317

Query  369  DTLDPALLPS  398
            DTLDPALL S
Sbjct  318  DTLDPALLRS  327


 Score = 83.6 bits (205),  Expect(2) = 1e-87
 Identities = 40/46 (86%), Positives = 41/46 (89%), Gaps = 0/46 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIELLTPLCP  531
            R GRLDRKVEFGLPDLESRTQIFKIHTRTMN ERDI+ ELL  LCP
Sbjct  326  RSGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCP  371


>gi|37932204|gb|AAP72958.1|  26S proteasome subunit 7-like protein [Lactuca sativa]
Length=426

 Score =  257 bits (657),  Expect(2) = 2e-87
 Identities = 127/128 (99%), Positives = 127/128 (99%), Gaps = 0/128 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA
Sbjct  198  GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  257

Query  189  RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  368
            RSKKACIVFFDEVDAIGGARFDDG GGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP
Sbjct  258  RSKKACIVFFDEVDAIGGARFDDGAGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  317

Query  369  DTLDPALL  392
            DTLDPALL
Sbjct  318  DTLDPALL  325


 Score = 85.5 bits (210),  Expect(2) = 2e-87
 Identities = 39/46 (84%), Positives = 42/46 (91%), Gaps = 0/46 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIELLTPLCP  531
            RPGRLDRKVEFGLPD+ESRTQIFKIHTRTMN ERD++ ELL  LCP
Sbjct  326  RPGRLDRKVEFGLPDMESRTQIFKIHTRTMNCERDVRFELLARLCP  371


>gi|37932196|gb|AAP72957.1|  26S proteasome subunit 7-like protein [Lactuca sativa]
Length=426

 Score =  257 bits (657),  Expect(2) = 2e-87
 Identities = 127/128 (99%), Positives = 127/128 (99%), Gaps = 0/128 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA
Sbjct  198  GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  257

Query  189  RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  368
            RSKKACIVFFDEVDAIGGARFDDG GGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP
Sbjct  258  RSKKACIVFFDEVDAIGGARFDDGAGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  317

Query  369  DTLDPALL  392
            DTLDPALL
Sbjct  318  DTLDPALL  325


 Score = 85.5 bits (210),  Expect(2) = 2e-87
 Identities = 39/46 (84%), Positives = 42/46 (91%), Gaps = 0/46 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIELLTPLCP  531
            RPGRLDRKVEFGLPD+ESRTQIFKIHTRTMN ERD++ ELL  LCP
Sbjct  326  RPGRLDRKVEFGLPDMESRTQIFKIHTRTMNCERDVRFELLARLCP  371


>gi|15220933|ref|NP_175781.1| UniGene infoGene info ATP binding / ATPase/ hydrolase/ nucleoside-triphosphatase/ nucleotide 
binding [Arabidopsis thaliana]
Length=464

 Score =  242 bits (618),  Expect(2) = 3e-81
 Identities = 117/128 (91%), Positives = 124/128 (96%), Gaps = 0/128 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GIDPPKGVLCYGPPG+GKTL+ARAVANRT ACFIRV+GSELVQKY+GEGARMVRELFQMA
Sbjct  235  GIDPPKGVLCYGPPGSGKTLVARAVANRTGACFIRVVGSELVQKYIGEGARMVRELFQMA  294

Query  189  RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  368
            RSKKACI+FFDE+DAIGGARFDDGVG DNEVQRTMLEI+ QLDGFDARGNIKVLMATNRP
Sbjct  295  RSKKACILFFDEIDAIGGARFDDGVGSDNEVQRTMLEILYQLDGFDARGNIKVLMATNRP  354

Query  369  DTLDPALL  392
            D LDPALL
Sbjct  355  DILDPALL  362


 Score = 79.7 bits (195),  Expect(2) = 3e-81
 Identities = 38/46 (82%), Positives = 40/46 (86%), Gaps = 0/46 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIELLTPLCP  531
            RPGRLDRKVEF LPDLE RTQIFKIHTRTM+ ERDI+ ELL  LCP
Sbjct  363  RPGRLDRKVEFCLPDLEGRTQIFKIHTRTMSCERDIRFELLAGLCP  408


>gi|6056389|gb|AAF02853.1|AC009324_2  Putative 26S proteasome ATPase subunit [Arabidopsis thaliana]
Length=451

 Score =  242 bits (618),  Expect(2) = 3e-81
 Identities = 117/128 (91%), Positives = 124/128 (96%), Gaps = 0/128 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GIDPPKGVLCYGPPG+GKTL+ARAVANRT ACFIRV+GSELVQKY+GEGARMVRELFQMA
Sbjct  222  GIDPPKGVLCYGPPGSGKTLVARAVANRTGACFIRVVGSELVQKYIGEGARMVRELFQMA  281

Query  189  RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  368
            RSKKACI+FFDE+DAIGGARFDDGVG DNEVQRTMLEI+ QLDGFDARGNIKVLMATNRP
Sbjct  282  RSKKACILFFDEIDAIGGARFDDGVGSDNEVQRTMLEILYQLDGFDARGNIKVLMATNRP  341

Query  369  DTLDPALL  392
            D LDPALL
Sbjct  342  DILDPALL  349


 Score = 79.7 bits (195),  Expect(2) = 3e-81
 Identities = 38/46 (82%), Positives = 40/46 (86%), Gaps = 0/46 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIELLTPLCP  531
            RPGRLDRKVEF LPDLE RTQIFKIHTRTM+ ERDI+ ELL  LCP
Sbjct  350  RPGRLDRKVEFCLPDLEGRTQIFKIHTRTMSCERDIRFELLAGLCP  395


>gi|89114282|gb|ABD61729.1|  26S proteasome ATPase subunit [Lupinus albus]
 gi|89114284|gb|ABD61730.1|  26S proteasome beta subunit [Lupinus albus]
Length=185

 Score =  169 bits (429),  Expect(2) = 5e-61
 Identities = 84/84 (100%), Positives = 84/84 (100%), Gaps = 0/84 (0%)
 Frame = +3

Query  141  YVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG  320
            YVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG
Sbjct  1    YVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG  60

Query  321  FDARGNIKVLMATNRPDTLDPALL  392
            FDARGNIKVLMATNRPDTLDPALL
Sbjct  61   FDARGNIKVLMATNRPDTLDPALL  84


 Score = 85.1 bits (209),  Expect(2) = 5e-61
 Identities = 40/46 (86%), Positives = 41/46 (89%), Gaps = 0/46 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIELLTPLCP  531
            RPGRLDRKVEFGLPDLE RTQIFKIHTRTMN ERDI+ ELL  LCP
Sbjct  85   RPGRLDRKVEFGLPDLEGRTQIFKIHTRTMNCERDIRFELLARLCP  130


>gi|92873672|gb|ABE82075.1|  AAA-protein subdomain [Medicago truncatula]
Length=178

 Score =  155 bits (392),  Expect(2) = 3e-57
 Identities = 77/77 (100%), Positives = 77/77 (100%), Gaps = 0/77 (0%)
 Frame = +3

Query  162  MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNI  341
            MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNI
Sbjct  1    MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNI  60

Query  342  KVLMATNRPDTLDPALL  392
            KVLMATNRPDTLDPALL
Sbjct  61   KVLMATNRPDTLDPALL  77


 Score = 86.7 bits (213),  Expect(2) = 3e-57
 Identities = 41/46 (89%), Positives = 42/46 (91%), Gaps = 0/46 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIELLTPLCP  531
            RPGRLDRKVEFGLPDLESRTQIFKIHTRTMN ERDI+ ELL  LCP
Sbjct  78   RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCP  123


>gi|116000720|emb|CAL50400.1|  26S proteasome subunit P45 family protein (IC) [Ostreococcus 
tauri]
Length=349

 Score =  150 bits (378),  Expect(2) = 5e-54
 Identities = 75/83 (90%), Positives = 79/83 (95%), Gaps = 1/83 (1%)
 Frame = +3

Query  147  GEGAR-MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF  323
            GE A  +VRELFQM+RSKKAC++FFDEVDAIGGARFDDG GGDNEVQRTMLEIVNQLDGF
Sbjct  166  GERAEELVRELFQMSRSKKACLIFFDEVDAIGGARFDDGQGGDNEVQRTMLEIVNQLDGF  225

Query  324  DARGNIKVLMATNRPDTLDPALL  392
            DARGNIKVLMATNRPDTLDPALL
Sbjct  226  DARGNIKVLMATNRPDTLDPALL  248


 Score = 81.3 bits (199),  Expect(2) = 5e-54
 Identities = 39/46 (84%), Positives = 41/46 (89%), Gaps = 0/46 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIELLTPLCP  531
            RPGRLDRKVEFGLPDLESRTQIFKIHTR+M  ERDI+ ELL  LCP
Sbjct  249  RPGRLDRKVEFGLPDLESRTQIFKIHTRSMAVERDIRYELLARLCP  294


>gi|11045086|emb|CAC14432.1|  26S proteasome subunit 4-like protein [Brassica napus]
Length=443

 Score =  177 bits (450),  Expect(2) = 1e-53
 Identities = 82/128 (64%), Positives = 107/128 (83%), Gaps = 0/128 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GI PPKGV+ YG PGTGKTLLA+AVAN T A F+RV+GSEL+QKY+G+G ++VRELF++A
Sbjct  218  GIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVA  277

Query  189  RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  368
                  IVF DE+DA+G  R+D   GG+ E+QRTMLE++NQLDGFD+RG++KV++ATNR 
Sbjct  278  DDLSPSIVFIDEIDAVGTKRYDANSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI  337

Query  369  DTLDPALL  392
            ++LDPALL
Sbjct  338  ESLDPALL  345


 Score = 52.4 bits (124),  Expect(2) = 1e-53
 Identities = 21/39 (53%), Positives = 30/39 (76%), Gaps = 0/39 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIE  510
            RPGR+DRK+EF LPD+++R +IF+IHT  M    D+ +E
Sbjct  346  RPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLSEDVNLE  384


>gi|13937244|gb|AAK50114.1|AF372977_1 UniGene info At2g20140/T2G17.6 [Arabidopsis thaliana]
Length=443

 Score =  177 bits (450),  Expect(2) = 2e-53
 Identities = 82/128 (64%), Positives = 107/128 (83%), Gaps = 0/128 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GI PPKGV+ YG PGTGKTLLA+AVAN T A F+RV+GSEL+QKY+G+G ++VRELF++A
Sbjct  218  GIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVA  277

Query  189  RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  368
                  IVF DE+DA+G  R+D   GG+ E+QRTMLE++NQLDGFD+RG++KV++ATNR 
Sbjct  278  DDLSPSIVFIDEIDAVGTKRYDANSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI  337

Query  369  DTLDPALL  392
            ++LDPALL
Sbjct  338  ESLDPALL  345


 Score = 52.0 bits (123),  Expect(2) = 2e-53
 Identities = 21/39 (53%), Positives = 30/39 (76%), Gaps = 0/39 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIE  510
            RPGR+DRK+EF LPD+++R +IF+IHT  M    D+ +E
Sbjct  346  RPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLAEDVNLE  384


>gi|15225307|ref|NP_179604.1| UniGene infoGene info ATP binding / ATPase/ hydrolase/ nucleoside-triphosphatase/ nucleotide 
binding [Arabidopsis thaliana]
 gi|4580460|gb|AAD24384.1| Gene info 26S proteasome subunit 4 [Arabidopsis thaliana]
 gi|14334798|gb|AAK59577.1| UniGene infoGene info putative 26S proteasome subunit 4 [Arabidopsis thaliana]
 gi|15810593|gb|AAL07184.1| UniGene infoGene info putative 26S proteasome subunit 4 [Arabidopsis thaliana]
Length=443

 Score =  177 bits (450),  Expect(2) = 2e-53
 Identities = 82/128 (64%), Positives = 107/128 (83%), Gaps = 0/128 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GI PPKGV+ YG PGTGKTLLA+AVAN T A F+RV+GSEL+QKY+G+G ++VRELF++A
Sbjct  218  GIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVA  277

Query  189  RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  368
                  IVF DE+DA+G  R+D   GG+ E+QRTMLE++NQLDGFD+RG++KV++ATNR 
Sbjct  278  DDLSPSIVFIDEIDAVGTKRYDANSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI  337

Query  369  DTLDPALL  392
            ++LDPALL
Sbjct  338  ESLDPALL  345


 Score = 52.0 bits (123),  Expect(2) = 2e-53
 Identities = 21/39 (53%), Positives = 30/39 (76%), Gaps = 0/39 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIE  510
            RPGR+DRK+EF LPD+++R +IF+IHT  M    D+ +E
Sbjct  346  RPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLAEDVNLE  384


>gi|6652880|gb|AAF22522.1|AF123391_1 UniGene info 26S proteasome AAA-ATPase subunit RPT2a [Arabidopsis thaliana]
Length=443

 Score =  177 bits (448),  Expect(2) = 2e-53
 Identities = 82/128 (64%), Positives = 107/128 (83%), Gaps = 0/128 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GI PPKGV+ YG PGTGKTLLA+AVAN T A F+RV+GSEL+QKY+G+G ++VRELF++A
Sbjct  218  GIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVA  277

Query  189  RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  368
                  IVF DE+DA+G  R+D   GG+ E+QRTMLE++NQLDGFD+RG++KV++ATNR 
Sbjct  278  DDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI  337

Query  369  DTLDPALL  392
            ++LDPALL
Sbjct  338  ESLDPALL  345


 Score = 52.4 bits (124),  Expect(2) = 2e-53
 Identities = 21/39 (53%), Positives = 30/39 (76%), Gaps = 0/39 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIE  510
            RPGR+DRK+EF LPD+++R +IF+IHT  M    D+ +E
Sbjct  346  RPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLSEDVNLE  384


>gi|15235544|ref|NP_194633.1| UniGene infoGene info RPT2A; ATPase [Arabidopsis thaliana]
 gi|4972050|emb|CAB43918.1| Gene info 26S proteasome subunit 4-like protein [Arabidopsis thaliana]
 gi|7269802|emb|CAB79662.1| Gene info 26S proteasome subunit 4-like protein [Arabidopsis thaliana]
 gi|14334604|gb|AAK59480.1| UniGene infoGene info putative 26S proteasome subunit 4 [Arabidopsis thaliana]
 gi|46917379|dbj|BAD18016.1| UniGene infoGene info 26S proteasome subunit AtRPT2a [Arabidopsis thaliana]
Length=443

 Score =  177 bits (448),  Expect(2) = 2e-53
 Identities = 82/128 (64%), Positives = 107/128 (83%), Gaps = 0/128 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GI PPKGV+ YG PGTGKTLLA+AVAN T A F+RV+GSEL+QKY+G+G ++VRELF++A
Sbjct  218  GIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVA  277

Query  189  RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  368
                  IVF DE+DA+G  R+D   GG+ E+QRTMLE++NQLDGFD+RG++KV++ATNR 
Sbjct  278  DDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI  337

Query  369  DTLDPALL  392
            ++LDPALL
Sbjct  338  ESLDPALL  345


 Score = 52.4 bits (124),  Expect(2) = 2e-53
 Identities = 21/39 (53%), Positives = 30/39 (76%), Gaps = 0/39 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIE  510
            RPGR+DRK+EF LPD+++R +IF+IHT  M    D+ +E
Sbjct  346  RPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLSEDVNLE  384


>gi|115474241|ref|NP_001060719.1| Gene info Os07g0691800 [Oryza sativa (japonica cultivar-group)]
 gi|109940120|sp|P46466|PRS4_ORYSA  26S protease regulatory subunit 4 homolog (TAT-binding protein 
homolog 2)
 gi|29837173|dbj|BAC75555.1| Gene info 26S proteasome regulatory subunit 4 homolog [Oryza sativa (japonica 
cultivar-group)]
 gi|113612255|dbj|BAF22633.1| Gene info Os07g0691800 [Oryza sativa (japonica cultivar-group)]
Length=448

 Score =  176 bits (447),  Expect(2) = 6e-53
 Identities = 82/128 (64%), Positives = 107/128 (83%), Gaps = 0/128 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GI PPKGV+ YG PGTGKTLLA+AVAN T A F+RV+GSEL+QKY+G+G ++VRELF++A
Sbjct  223  GIRPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVA  282

Query  189  RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  368
                  IVF DE+DA+G  R+D   GG+ E+QRTMLE++NQLDGFD+RG++KV++ATNR 
Sbjct  283  DELSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI  342

Query  369  DTLDPALL  392
            ++LDPALL
Sbjct  343  ESLDPALL  350


 Score = 51.2 bits (121),  Expect(2) = 6e-53
 Identities = 21/39 (53%), Positives = 30/39 (76%), Gaps = 0/39 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIE  510
            RPGR+DRK+EF LPD+++R +IF+IHT  M    D+ +E
Sbjct  351  RPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLADDVNLE  389


>gi|115452485|ref|NP_001049843.1| Gene info Os03g0298400 [Oryza sativa (japonica cultivar-group)]
 gi|17297987|dbj|BAB78491.1| UniGene infoGene info 26S proteasome regulatory particle triple-A ATPase subunit2b 
[Oryza sativa (japonica cultivar-group)]
 gi|108707666|gb|ABF95461.1| Gene info 26S protease regulatory subunit 4, putative, expressed [Oryza 
sativa (japonica cultivar-group)]
 gi|113548314|dbj|BAF11757.1| Gene info Os03g0298400 [Oryza sativa (japonica cultivar-group)]
Length=450

 Score =  176 bits (447),  Expect(2) = 6e-53
 Identities = 82/128 (64%), Positives = 107/128 (83%), Gaps = 0/128 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GI PPKGV+ YG PGTGKTLLA+AVAN T A F+RV+GSEL+QKY+G+G ++VRELF++A
Sbjct  225  GIRPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVA  284

Query  189  RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  368
                  IVF DE+DA+G  R+D   GG+ E+QRTMLE++NQLDGFD+RG++KV++ATNR 
Sbjct  285  DDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI  344

Query  369  DTLDPALL  392
            ++LDPALL
Sbjct  345  ESLDPALL  352


 Score = 51.2 bits (121),  Expect(2) = 6e-53
 Identities = 21/39 (53%), Positives = 30/39 (76%), Gaps = 0/39 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIE  510
            RPGR+DRK+EF LPD+++R +IF+IHT  M    D+ +E
Sbjct  353  RPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLADDVNLE  391


>gi|556558|dbj|BAA04615.1| UniGene info rice homologue of Tat binding protein [Oryza sativa (japonica 
cultivar-group)]
Length=448

 Score =  176 bits (447),  Expect(2) = 6e-53
 Identities = 82/128 (64%), Positives = 107/128 (83%), Gaps = 0/128 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GI PPKGV+ YG PGTGKTLLA+AVAN T A F+RV+GSEL+QKY+G+G ++VRELF++A
Sbjct  223  GIRPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVA  282

Query  189  RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  368
                  IVF DE+DA+G  R+D   GG+ E+QRTMLE++NQLDGFD+RG++KV++ATNR 
Sbjct  283  DELSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI  342

Query  369  DTLDPALL  392
            ++LDPALL
Sbjct  343  ESLDPALL  350


 Score = 51.2 bits (121),  Expect(2) = 6e-53
 Identities = 21/39 (53%), Positives = 30/39 (76%), Gaps = 0/39 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIE  510
            RPGR+DRK+EF LPD+++R +IF+IHT  M    D+ +E
Sbjct  351  RPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLADDVNLE  389


>gi|6752880|gb|AAF27916.1|AF220199_1 UniGene info 26S proteasome regulatory subunit 8 [Pinus taeda]
Length=433

 Score =  181 bits (458),  Expect(2) = 6e-53
 Identities = 93/129 (72%), Positives = 104/129 (80%), Gaps = 1/129 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GI  PKGVL YGPPGTGKTLLARAVA+ TD  FIRV GSELVQKY+GEG+RMVRELF MA
Sbjct  205  GIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMA  264

Query  189  RSKKACIVFFDEVDAIGGARFDDGVG-GDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR  365
            R     I+F DE+D+IG AR + G G GD+EVQRTMLE++NQLDGF+A   IKVLMATNR
Sbjct  265  REHAPSIIFMDEIDSIGSARMESGTGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNR  324

Query  366  PDTLDPALL  392
             D LD ALL
Sbjct  325  IDILDQALL  333


 Score = 47.0 bits (110),  Expect(2) = 6e-53
 Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 0/39 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIE  510
            RPGR+DRK+EF  P+ ESR  I KIH+R MN  R I ++
Sbjct  334  RPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLK  372


>gi|87241031|gb|ABD32889.1|  AAA ATPase; 26S proteasome subunit P45 [Medicago truncatula]
Length=445

 Score =  177 bits (448),  Expect(2) = 8e-53
 Identities = 82/128 (64%), Positives = 107/128 (83%), Gaps = 0/128 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GI PPKGV+ YG PGTGKTLLA+AVAN T A F+RV+GSEL+QKY+G+G ++VRELF++A
Sbjct  220  GIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVA  279

Query  189  RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  368
                  IVF DE+DA+G  R+D   GG+ E+QRTMLE++NQLDGFD+RG++KV++ATNR 
Sbjct  280  DDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI  339

Query  369  DTLDPALL  392
            ++LDPALL
Sbjct  340  ESLDPALL  347


 Score = 50.4 bits (119),  Expect(2) = 8e-53
 Identities = 21/39 (53%), Positives = 29/39 (74%), Gaps = 0/39 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIE  510
            RPGR+DRK+EF LPD+++R +IF IHT  M    D+ +E
Sbjct  348  RPGRIDRKIEFPLPDIKTRRRIFTIHTSRMTLADDVNLE  386


>gi|116056475|emb|CAL52764.1|  26S proteasome regulatory complex, ATPase RPT4 (ISS) [Ostreococcus 
tauri]
Length=442

 Score =  180 bits (456),  Expect(2) = 8e-53
 Identities = 94/130 (72%), Positives = 104/130 (80%), Gaps = 2/130 (1%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GI  PKGV+ YGPPGTGKTLLARAVA+ TD CFIRV GSELVQKY+GEGARMVRELF MA
Sbjct  213  GIAQPKGVILYGPPGTGKTLLARAVAHHTDCCFIRVSGSELVQKYIGEGARMVRELFVMA  272

Query  189  RSKKACIVFFDEVDAIGGARFD--DGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN  362
            R     I+F DEVD+IG AR     G GGD+EVQRTMLE++NQLDGF+A   IKV+MATN
Sbjct  273  REHAPSILFMDEVDSIGSARDSGGGGGGGDSEVQRTMLELLNQLDGFEATNQIKVIMATN  332

Query  363  RPDTLDPALL  392
            R D LD ALL
Sbjct  333  RLDILDQALL  342


 Score = 47.4 bits (111),  Expect(2) = 8e-53
 Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 0/39 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIE  510
            RPGR+DRK+EF  P  ESR  I KIH+R MN  R I ++
Sbjct  343  RPGRIDRKIEFPNPSEESRVDILKIHSRKMNLVRGIDLK  381


>gi|21593177|gb|AAM65126.1| UniGene info 26S proteasome subunit 4 [Arabidopsis thaliana]
Length=443

 Score =  175 bits (443),  Expect(2) = 1e-52
 Identities = 81/128 (63%), Positives = 106/128 (82%), Gaps = 0/128 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GI PPKGV+ YG PGTGKTLLA+AVAN T A F+RV+GSEL+QKY+G+G ++VRELF++A
Sbjct  218  GIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVA  277

Query  189  RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  368
                  I F DE+DA+G  R+D   GG+ E+QRTMLE++NQLDGFD+RG++KV++ATNR 
Sbjct  278  DDLSPSIGFIDEIDAVGTKRYDANSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI  337

Query  369  DTLDPALL  392
            ++LDPALL
Sbjct  338  ESLDPALL  345


 Score = 52.0 bits (123),  Expect(2) = 1e-52
 Identities = 21/39 (53%), Positives = 30/39 (76%), Gaps = 0/39 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIE  510
            RPGR+DRK+EF LPD+++R +IF+IHT  M    D+ +E
Sbjct  346  RPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLAEDVNLE  384


>gi|15241241|ref|NP_197500.1| UniGene infoGene info RPT6A; ATP binding / ATPase/ hydrolase/ nucleoside-triphosphatase/ 
nucleotide binding [Arabidopsis thaliana]
 gi|14532682|gb|AAK64142.1| UniGene infoGene info putative 26S proteasome AAA-ATPase subunit RPT6a [Arabidopsis 
thaliana]
 gi|19310807|gb|AAL85134.1| UniGene infoGene info putative 26S proteasome AAA-ATPase subunit RPT6a [Arabidopsis 
thaliana]
 gi|21593097|gb|AAM65046.1| UniGene infoGene info 26S proteasome AAA-ATPase subunit RPT6a-like protein [Arabidopsis 
thaliana]
 gi|110740531|dbj|BAE98371.1| Gene info 26S proteasome AAA-ATPase subunit RPT6a - like protein [Arabidopsis 
thaliana]
Length=419

 Score =  180 bits (456),  Expect(2) = 1e-52
 Identities = 93/129 (72%), Positives = 104/129 (80%), Gaps = 1/129 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GI  PKGVL YGPPGTGKTLLARAVA+ TD  FIRV GSELVQKY+GEG+RMVRELF MA
Sbjct  191  GIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMA  250

Query  189  RSKKACIVFFDEVDAIGGARFDDGVG-GDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR  365
            R     I+F DE+D+IG AR + G G GD+EVQRTMLE++NQLDGF+A   IKVLMATNR
Sbjct  251  REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNR  310

Query  366  PDTLDPALL  392
             D LD ALL
Sbjct  311  IDILDQALL  319


 Score = 47.0 bits (110),  Expect(2) = 1e-52
 Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 0/39 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIE  510
            RPGR+DRK+EF  P+ ESR  I KIH+R MN  R I ++
Sbjct  320  RPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLK  358


>gi|18420092|ref|NP_568389.1| UniGene infoGene info ATSUG1; ATPase [Arabidopsis thaliana]
 gi|13537115|dbj|BAB40755.1| UniGene infoGene info AtSUG1 [Arabidopsis thaliana]
 gi|17473854|gb|AAL38350.1| UniGene infoGene info unknown protein [Arabidopsis thaliana]
 gi|32306505|gb|AAP78936.1| UniGene infoGene info At5g19990 [Arabidopsis thaliana]
Length=419

 Score =  180 bits (456),  Expect(2) = 1e-52
 Identities = 93/129 (72%), Positives = 104/129 (80%), Gaps = 1/129 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GI  PKGVL YGPPGTGKTLLARAVA+ TD  FIRV GSELVQKY+GEG+RMVRELF MA
Sbjct  191  GIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMA  250

Query  189  RSKKACIVFFDEVDAIGGARFDDGVG-GDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR  365
            R     I+F DE+D+IG AR + G G GD+EVQRTMLE++NQLDGF+A   IKVLMATNR
Sbjct  251  REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNR  310

Query  366  PDTLDPALL  392
             D LD ALL
Sbjct  311  IDILDQALL  319


 Score = 47.0 bits (110),  Expect(2) = 1e-52
 Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 0/39 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIE  510
            RPGR+DRK+EF  P+ ESR  I KIH+R MN  R I ++
Sbjct  320  RPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLK  358


>gi|6652888|gb|AAF22526.1|AF123395_1 UniGene info 26S proteasome AAA-ATPase subunit RPT6a [Arabidopsis thaliana]
Length=405

 Score =  180 bits (456),  Expect(2) = 1e-52
 Identities = 93/129 (72%), Positives = 104/129 (80%), Gaps = 1/129 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GI  PKGVL YGPPGTGKTLLARAVA+ TD  FIRV GSELVQKY+GEG+RMVRELF MA
Sbjct  177  GIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMA  236

Query  189  RSKKACIVFFDEVDAIGGARFDDGVG-GDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR  365
            R     I+F DE+D+IG AR + G G GD+EVQRTMLE++NQLDGF+A   IKVLMATNR
Sbjct  237  REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNR  296

Query  366  PDTLDPALL  392
             D LD ALL
Sbjct  297  IDILDQALL  305


 Score = 47.0 bits (110),  Expect(2) = 1e-52
 Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 0/39 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIE  510
            RPGR+DRK+EF  P+ ESR  I KIH+R MN  R I ++
Sbjct  306  RPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLK  344


>gi|11993907|gb|AAG42150.1|  26S proteasome RPT6a subunit [Dactylis glomerata]
Length=452

 Score =  181 bits (458),  Expect(2) = 1e-52
 Identities = 93/129 (72%), Positives = 104/129 (80%), Gaps = 1/129 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GI  PKGVL YGPPGTGKTLLARAVA+ TD  FIRV GSELVQKY+GEG+RMVRELF MA
Sbjct  224  GIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMA  283

Query  189  RSKKACIVFFDEVDAIGGARFDDGVG-GDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR  365
            R     I+F DE+D+IG AR + G G GD+EVQRTMLE++NQLDGF+A   IKVLMATNR
Sbjct  284  REHAPSIIFMDEIDSIGSARMESGTGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNR  343

Query  366  PDTLDPALL  392
             D LD ALL
Sbjct  344  IDILDQALL  352


 Score = 45.8 bits (107),  Expect(2) = 1e-52
 Identities = 21/39 (53%), Positives = 28/39 (71%), Gaps = 0/39 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIE  510
            RPGR+DRK+EF  P+ +SR  I KIH+ TMN  R I ++
Sbjct  353  RPGRIDRKIEFPNPNEDSRGDILKIHSTTMNLMRGIDLK  391


>gi|115444937|ref|NP_001046248.1| Gene info Os02g0205300 [Oryza sativa (japonica cultivar-group)]
 gi|11094194|dbj|BAB17626.1| UniGene infoGene info 26S proteasome regulatory particle triple-A ATPase subunit6 [Oryza 
sativa (japonica cultivar-group)]
 gi|11991116|dbj|BAB19880.1| UniGene info 26S proteasome ATPase subunit Rpt6 [Oryza sativa]
 gi|46390529|dbj|BAD16017.1| Gene info 26S proteasome regulatory particle triple-A ATPase subunit6 [Oryza 
sativa (japonica cultivar-group)]
 gi|51536269|dbj|BAD38437.1| Gene info 26S proteasome regulatory particle triple-A ATPase subunit6 [Oryza 
sativa (japonica cultivar-group)]
 gi|113535779|dbj|BAF08162.1| Gene info Os02g0205300 [Oryza sativa (japonica cultivar-group)]
Length=424

 Score =  181 bits (458),  Expect(2) = 1e-52
 Identities = 93/129 (72%), Positives = 104/129 (80%), Gaps = 1/129 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GI  PKGVL YGPPGTGKTLLARAVA+ TD  FIRV GSELVQKY+GEG+RMVRELF MA
Sbjct  196  GIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMA  255

Query  189  RSKKACIVFFDEVDAIGGARFDDGVG-GDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR  365
            R     I+F DE+D+IG AR + G G GD+EVQRTMLE++NQLDGF+A   IKVLMATNR
Sbjct  256  REHAPSIIFMDEIDSIGSARMESGTGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNR  315

Query  366  PDTLDPALL  392
             D LD ALL
Sbjct  316  IDILDQALL  324


 Score = 45.8 bits (107),  Expect(2) = 1e-52
 Identities = 21/39 (53%), Positives = 28/39 (71%), Gaps = 0/39 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIE  510
            RPGR+DRK+EF  P+ +SR  I KIH+R MN  R I ++
Sbjct  325  RPGRIDRKIEFPNPNEDSRFDILKIHSRKMNLMRGIDLK  363


>gi|17385640|dbj|BAA87070.2|  TAT-binding protein homolog [Matricaria chamomilla]
Length=414

 Score =  181 bits (460),  Expect(2) = 2e-52
 Identities = 93/129 (72%), Positives = 105/129 (81%), Gaps = 1/129 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GI  PKGVL YGPPGTGKTLLARAVA+ TD  FIRV GSELVQKY+GEG+RMVRELF MA
Sbjct  186  GIAQPKGVLLYGPPGTGKTLLARAVAHHTDCAFIRVSGSELVQKYIGEGSRMVRELFVMA  245

Query  189  RSKKACIVFFDEVDAIGGARFDDGVG-GDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR  365
            R     I+F DE+D+IG AR + G G GD+EVQRTMLE++NQLDGF++   IKVLMATNR
Sbjct  246  REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFESSTKIKVLMATNR  305

Query  366  PDTLDPALL  392
             D LDPALL
Sbjct  306  IDILDPALL  314


 Score = 44.3 bits (103),  Expect(2) = 2e-52
 Identities = 20/39 (51%), Positives = 28/39 (71%), Gaps = 0/39 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIE  510
            RPGR+DR++EF  P+ +SR  I KIH+R MN  R I ++
Sbjct  315  RPGRIDREIEFPNPNEDSRFDILKIHSRKMNLMRGIDLK  353


>gi|115468800|ref|NP_001057999.1| Gene info Os06g0600100 [Oryza sativa (japonica cultivar-group)]
 gi|50725031|dbj|BAD32833.1| Gene info putative 26S proteasome regulatory particle triple-A ATPase subunit6 
[Oryza sativa (japonica cultivar-group)]
 gi|50725483|dbj|BAD32954.1| Gene info putative 26S proteasome regulatory particle triple-A ATPase subunit6 
[Oryza sativa (japonica cultivar-group)]
 gi|113596039|dbj|BAF19913.1| Gene info Os06g0600100 [Oryza sativa (japonica cultivar-group)]
Length=423

 Score =  179 bits (455),  Expect(2) = 3e-52
 Identities = 93/129 (72%), Positives = 103/129 (79%), Gaps = 1/129 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GI  PKGVL YGPPGTGKTLLARAVA+ TD  FIRV GSELVQKY+GEG+RMVRELF MA
Sbjct  195  GIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMA  254

Query  189  RSKKACIVFFDEVDAIGGARFDDGV-GGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR  365
            R     I+F DE+D+IG AR   G  GGD+EVQRTMLE++NQLDGF+A   IKVLMATNR
Sbjct  255  REHAPSIIFMDEIDSIGSARMQSGSGGGDSEVQRTMLELLNQLDGFEASNKIKVLMATNR  314

Query  366  PDTLDPALL  392
             D LD ALL
Sbjct  315  MDILDQALL  323


 Score = 45.8 bits (107),  Expect(2) = 3e-52
 Identities = 21/39 (53%), Positives = 28/39 (71%), Gaps = 0/39 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIE  510
            RPGR+DRK+EF  P+ +SR  I KIH+R MN  R I ++
Sbjct  324  RPGRIDRKIEFPNPNEDSRFDILKIHSRKMNLMRGIDLK  362


>gi|92867387|gb|ABE77697.1|  AAA ATPase, central region; 26S proteasome subunit P45 [Medicago 
truncatula]
Length=415

 Score =  182 bits (462),  Expect(2) = 3e-52
 Identities = 86/128 (67%), Positives = 104/128 (81%), Gaps = 0/128 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GIDPP+GVL YGPPGTGKT+LA+AVAN T A FIRV+GSE VQKY+GEG RMVR++F++A
Sbjct  192  GIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLA  251

Query  189  RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  368
            +     I+F DEVDAI  ARFD   G D EVQR ++E++NQ+DGFD   N+KV+MATNR 
Sbjct  252  KENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRA  311

Query  369  DTLDPALL  392
            DTLDPALL
Sbjct  312  DTLDPALL  319


 Score = 43.1 bits (100),  Expect(2) = 3e-52
 Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 0/39 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIE  510
            RPGRLDRK+EF LPD   +  +F++ T  MN   ++ +E
Sbjct  320  RPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLE  358


>gi|15237159|ref|NP_200637.1| UniGene infoGene info RPT3; ATPase [Arabidopsis thaliana]
 gi|28558168|sp|Q9SEI4|PRS6B_ARATH Gene info 26S protease regulatory subunit 6B homolog (26S proteasome AAA-ATPase 
subunit RPT3) (Regulatory particle triple-A ATPase 
subunit 3)
 gi|6652882|gb|AAF22523.1|AF123392_1 UniGene infoGene info 26S proteasome AAA-ATPase subunit RPT3 [Arabidopsis thaliana]
 gi|8777330|dbj|BAA96920.1| Gene info 26S proteasome AAA-ATPase subunit RPT3 [Arabidopsis thaliana]
 gi|17979231|gb|AAL49932.1| Gene info AT4g10340/F24G24_140 [Arabidopsis thaliana]
 gi|56382019|gb|AAV85728.1| UniGene infoGene info At5g58290 [Arabidopsis thaliana]
Length=408

 Score =  182 bits (462),  Expect(2) = 3e-52
 Identities = 86/128 (67%), Positives = 104/128 (81%), Gaps = 0/128 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GIDPP+GVL YGPPGTGKT+LA+AVAN T A FIRV+GSE VQKY+GEG RMVR++F++A
Sbjct  185  GIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLA  244

Query  189  RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  368
            +     I+F DEVDAI  ARFD   G D EVQR ++E++NQ+DGFD   N+KV+MATNR 
Sbjct  245  KENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRA  304

Query  369  DTLDPALL  392
            DTLDPALL
Sbjct  305  DTLDPALL  312


 Score = 43.1 bits (100),  Expect(2) = 3e-52
 Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 0/39 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIE  510
            RPGRLDRK+EF LPD   +  +F++ T  MN   ++ +E
Sbjct  313  RPGRLDRKIEFPLPDRRQKRLVFQVCTSKMNLSDEVDLE  351


>gi|116056700|emb|CAL52989.1|  26S proteasome regulatory complex, ATPase RPT1 (ISS) [Ostreococcus 
tauri]
Length=727

 Score =  179 bits (454),  Expect(2) = 5e-52
 Identities = 78/128 (60%), Positives = 103/128 (80%), Gaps = 0/128 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GI PPKGVL YGPPGTGKTLLA+A+A+  DA F++++ S +V KY+GE AR++RE+F  A
Sbjct  183  GIAPPKGVLLYGPPGTGKTLLAKAIASNIDANFLKIVSSAIVDKYIGESARLIREMFGYA  242

Query  189  RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  368
            R  + CI+F DE+DAIGG RF +G   D E+QRT++E++NQLDGFD  G +K++MATNRP
Sbjct  243  RDHEPCIIFMDEIDAIGGKRFSEGTSADREIQRTLMELLNQLDGFDVLGKVKMIMATNRP  302

Query  369  DTLDPALL  392
            D LDPAL+
Sbjct  303  DVLDPALM  310


 Score = 45.4 bits (106),  Expect(2) = 5e-52
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 0/47 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIELLTPLCPQ  534
            RPGRLDRK+E  LP+ + R ++ KIH + +N E +I  E +  +  +
Sbjct  311  RPGRLDRKIEIPLPNEQGRVEVLKIHAQKLNKEGEIDYESIAKIAEE  357


>gi|18479040|gb|AAL73395.1|AF432345_1  26S proteasome regulatory subunit IV [Tortula ruralis]
Length=446

 Score =  173 bits (439),  Expect(2) = 8e-52
 Identities = 82/128 (64%), Positives = 106/128 (82%), Gaps = 0/128 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GI P KGV+ YG PGTGKTLLA+AVAN T A F+RV+GSEL+QKY+G+G ++VRELF++A
Sbjct  221  GIKPLKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVA  280

Query  189  RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  368
                  IVF DE+DAIG  R+D   GG+ E+QRTMLE++NQLDGFD+RG++KV++ATNR 
Sbjct  281  DELSPTIVFIDEIDAIGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI  340

Query  369  DTLDPALL  392
            ++LDPALL
Sbjct  341  ESLDPALL  348


 Score = 50.4 bits (119),  Expect(2) = 8e-52
 Identities = 21/39 (53%), Positives = 29/39 (74%), Gaps = 0/39 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIE  510
            RPGR+DRK+EF LPD ++R +IF+IHT  M    D+ +E
Sbjct  349  RPGRIDRKIEFPLPDTKTRRRIFQIHTSRMTMADDVNLE  387


>gi|77745479|gb|ABB02638.1|  26S proteasome subunit 4-like [Solanum tuberosum]
Length=444

 Score =  172 bits (437),  Expect(2) = 8e-52
 Identities = 80/128 (62%), Positives = 106/128 (82%), Gaps = 0/128 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GI PPKGV+ YG PGTGKTLLA+AVAN T A F+RV+GSEL+QKY+G+G ++VRELF++A
Sbjct  219  GIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVA  278

Query  189  RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  368
                  IVF DE+DA+   R+D   GG+ E+QRTMLE++NQLDGFD+RG++KV++ATN+ 
Sbjct  279  DDLSPSIVFIDEIDAVRTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNKI  338

Query  369  DTLDPALL  392
            ++LDPALL
Sbjct  339  ESLDPALL  346


 Score = 51.2 bits (121),  Expect(2) = 8e-52
 Identities = 21/39 (53%), Positives = 30/39 (76%), Gaps = 0/39 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIE  510
            RPGR+DRK+EF LPD+++R +IF+IHT  M    D+ +E
Sbjct  347  RPGRIDRKIEFPLPDIKTRRRIFQIHTGKMTLSDDVNLE  385


>gi|115445841|ref|NP_001046700.1| Gene info Os02g0325100 [Oryza sativa (japonica cultivar-group)]
 gi|46390257|dbj|BAD15686.1| Gene info putative 26S proteasome regulatory particle triple-A ATPase subunit3 
[Oryza sativa (japonica cultivar-group)]
 gi|113536231|dbj|BAF08614.1| Gene info Os02g0325100 [Oryza sativa (japonica cultivar-group)]
Length=419

 Score =  180 bits (457),  Expect(2) = 1e-51
 Identities = 85/128 (66%), Positives = 104/128 (81%), Gaps = 0/128 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GIDPP+GVL YGPPGTGKT+LA+AVA+ T A FIRV+GSE VQKY+GEG RMVR++F++A
Sbjct  196  GIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLA  255

Query  189  RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  368
            +     I+F DEVDAI  ARFD   G D EVQR ++E++NQ+DGFD   N+KV+MATNR 
Sbjct  256  KENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRA  315

Query  369  DTLDPALL  392
            DTLDPALL
Sbjct  316  DTLDPALL  323


 Score = 43.1 bits (100),  Expect(2) = 1e-51
 Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 0/39 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIE  510
            RPGRLDRK+EF LPD   +  +F++ T  MN   ++ +E
Sbjct  324  RPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLE  362


>gi|17298145|dbj|BAB78494.1| UniGene info 26S proteasome regulatory particle triple-A ATPase subunit3 [Oryza 
sativa (japonica cultivar-group)]
Length=368

 Score =  180 bits (457),  Expect(2) = 1e-51
 Identities = 85/128 (66%), Positives = 104/128 (81%), Gaps = 0/128 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GIDPP+GVL YGPPGTGKT+LA+AVA+ T A FIRV+GSE VQKY+GEG RMVR++F++A
Sbjct  145  GIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLA  204

Query  189  RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  368
            +     I+F DEVDAI  ARFD   G D EVQR ++E++NQ+DGFD   N+KV+MATNR 
Sbjct  205  KENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRA  264

Query  369  DTLDPALL  392
            DTLDPALL
Sbjct  265  DTLDPALL  272


 Score = 43.1 bits (100),  Expect(2) = 1e-51
 Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 0/39 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIE  510
            RPGRLDRK+EF LPD   +  +F++ T  MN   ++ +E
Sbjct  273  RPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLE  311


>gi|15219503|ref|NP_175120.1| UniGene infoGene info ATP binding / ATPase/ hydrolase/ nucleoside-triphosphatase/ nucleotide 
binding [Arabidopsis thaliana]
 gi|7767657|gb|AAF69154.1|AC007915_6 Gene info F27F5.8 [Arabidopsis thaliana]
 gi|17065266|gb|AAL32787.1| UniGene infoGene info similar to 26S proteasome AAA-ATPase subunit RPT4a [Arabidopsis 
thaliana]
 gi|21387177|gb|AAM47992.1| UniGene infoGene info 26S proteasome AAA-ATPase subunit RPT4a-like protein [Arabidopsis 
thaliana]
Length=399

 Score =  182 bits (461),  Expect(2) = 1e-51
 Identities = 80/128 (62%), Positives = 103/128 (80%), Gaps = 0/128 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GI PPKGVL YGPPGTGKTLLARA+A+  DA F++V+ S ++ KY+GE AR++RE+F  A
Sbjct  169  GIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYA  228

Query  189  RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  368
            R  + CI+F DE+DAIGG RF +G   D E+QRT++E++NQLDGFD  G +K++MATNRP
Sbjct  229  REHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP  288

Query  369  DTLDPALL  392
            D LDPALL
Sbjct  289  DVLDPALL  296


 Score = 41.2 bits (95),  Expect(2) = 1e-51
 Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 0/44 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIELLTPL  525
            RPGRLDRK+E  LP+ +SR +I KIH   +    +I  E +  L
Sbjct  297  RPGRLDRKIEIPLPNEQSRMEILKIHASGIAKHGEIDYEAIVKL  340


>gi|1709798|sp|P54778|PRS6B_SOLTU  26S protease regulatory subunit 6B homolog
 gi|1155334|gb|AAB67835.1| UniGene info POTATP1
Length=413

 Score =  180 bits (457),  Expect(2) = 2e-51
 Identities = 85/128 (66%), Positives = 104/128 (81%), Gaps = 0/128 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GIDPP+GVL YGPPGTGKT+LA+AVA+ T A FIRV+GSE VQKY+GEG RMVR++F++A
Sbjct  190  GIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLA  249

Query  189  RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  368
            +     I+F DEVDAI  ARFD   G D EVQR ++E++NQ+DGFD   N+KV+MATNR 
Sbjct  250  KENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRA  309

Query  369  DTLDPALL  392
            DTLDPALL
Sbjct  310  DTLDPALL  317


 Score = 42.4 bits (98),  Expect(2) = 2e-51
 Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 0/39 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIE  510
            RPGRLDRK+EF LPD   +  +F++ T  MN   ++ +E
Sbjct  318  RPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLGDEVDLE  356


>gi|115468870|ref|NP_001058034.1| Gene info Os06g0607800 [Oryza sativa (japonica cultivar-group)]
 gi|51090352|dbj|BAD35613.1| Gene info putative 26S proteasome regulatory particle triple-A ATPase subunit4 
[Oryza sativa (japonica cultivar-group)]
 gi|51091388|dbj|BAD36121.1| Gene info putative 26S proteasome regulatory particle triple-A ATPase subunit4 
[Oryza sativa (japonica cultivar-group)]
 gi|113596074|dbj|BAF19948.1| Gene info Os06g0607800 [Oryza sativa (japonica cultivar-group)]
Length=401

 Score =  181 bits (460),  Expect(2) = 3e-51
 Identities = 79/128 (61%), Positives = 103/128 (80%), Gaps = 0/128 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GI PPKGVL YGPPGTGKTLLARA+A+  DA F++++ S ++ KY+GE AR++RE+F  A
Sbjct  171  GIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFSYA  230

Query  189  RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  368
            R  + CI+F DE+DAIGG RF +G   D E+QRT++E++NQLDGFD  G +K++MATNRP
Sbjct  231  REHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDELGKVKMIMATNRP  290

Query  369  DTLDPALL  392
            D LDPALL
Sbjct  291  DVLDPALL  298


 Score = 40.4 bits (93),  Expect(2) = 3e-51
 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 0/44 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIELLTPL  525
            RPGRLDRK+E  LP+ +SR ++ KIH   +    +I  E +  L
Sbjct  299  RPGRLDRKIEIPLPNEQSRMEVLKIHAAGIAKHGEIDYEAVVKL  342


>gi|15239140|ref|NP_199115.1| UniGene infoGene info RPT4A; ATPase [Arabidopsis thaliana]
 gi|6652884|gb|AAF22524.1|AF123393_1 UniGene infoGene info 26S proteasome AAA-ATPase subunit RPT4a [Arabidopsis thaliana]
 gi|13937183|gb|AAK50085.1|AF372945_1 UniGene infoGene info AT5g43010/MBD2_21 [Arabidopsis thaliana]
 gi|9758590|dbj|BAB09203.1| Gene info 26S proteasome AAA-ATPase subunit RPT4a [Arabidopsis thaliana]
 gi|18700262|gb|AAL77741.1| UniGene infoGene info AT5g43010/MBD2_21 [Arabidopsis thaliana]
Length=399

 Score =  181 bits (460),  Expect(2) = 3e-51
 Identities = 80/128 (62%), Positives = 103/128 (80%), Gaps = 0/128 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GI PPKGVL YGPPGTGKTLLARA+A+  DA F++V+ S ++ KY+GE AR++RE+F  A
Sbjct  169  GIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYA  228

Query  189  RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  368
            R  + CI+F DE+DAIGG RF +G   D E+QRT++E++NQLDGFD  G +K++MATNRP
Sbjct  229  REHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDNLGKVKMIMATNRP  288

Query  369  DTLDPALL  392
            D LDPALL
Sbjct  289  DVLDPALL  296


 Score = 40.4 bits (93),  Expect(2) = 3e-51
 Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 0/44 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIELLTPL  525
            RPGRLDRK+E  LP+ +SR  I KIH   +    +I  E +  L
Sbjct  297  RPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYEAIVKL  340


>gi|17298147|dbj|BAB78495.1| UniGene info 26S proteasome regulatory particle triple-A ATPase subunit4b 
[Oryza sativa (japonica cultivar-group)]
Length=377

 Score =  181 bits (460),  Expect(2) = 3e-51
 Identities = 79/128 (61%), Positives = 103/128 (80%), Gaps = 0/128 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GI PPKGVL YGPPGTGKTLLARA+A+  DA F++++ S ++ KY+GE AR++RE+F  A
Sbjct  147  GIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFSYA  206

Query  189  RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  368
            R  + CI+F DE+DAIGG RF +G   D E+QRT++E++NQLDGFD  G +K++MATNRP
Sbjct  207  REHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDELGKVKMIMATNRP  266

Query  369  DTLDPALL  392
            D LDPALL
Sbjct  267  DVLDPALL  274


 Score = 40.4 bits (93),  Expect(2) = 3e-51
 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 0/44 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIELLTPL  525
            RPGRLDRK+E  LP+ +SR ++ KIH   +    +I  E +  L
Sbjct  275  RPGRLDRKIEIPLPNEQSRMEVLKIHAAGIAKHGEIDYEAVVKL  318


>gi|42602319|gb|AAS21759.1| UniGene infoGene info 26S proteasome regulatory complex ATPase RPT3 [Zea mays]
Length=348

 Score =  179 bits (453),  Expect(2) = 3e-51
 Identities = 85/128 (66%), Positives = 104/128 (81%), Gaps = 0/128 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GIDPP+GVL YGPPGTGKT+LA+AVA+ T A FIRV+GSE VQKY+GEG RMVR++F++A
Sbjct  125  GIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAAFIRVVGSEGVQKYLGEGPRMVRDVFRLA  184

Query  189  RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  368
            +     I+F DEVDAI  ARFD   G D EVQR ++E++NQ+DGFD   N+KV+MATNR 
Sbjct  185  KENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRA  244

Query  369  DTLDPALL  392
            DTLDPALL
Sbjct  245  DTLDPALL  252


 Score = 43.1 bits (100),  Expect(2) = 3e-51
 Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 0/39 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIE  510
            RPGRLDRK+EF LPD   +  +F++ T  MN   ++ +E
Sbjct  253  RPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLE  291


>gi|50660432|gb|AAT80904.1|  26S proteasome ATPase subunit [Lemna minor]
Length=120

 Score =  135 bits (340),  Expect(2) = 3e-51
 Identities = 66/66 (100%), Positives = 66/66 (100%), Gaps = 0/66 (0%)
 Frame = +3

Query  195  KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT  374
            KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT
Sbjct  1    KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT  60

Query  375  LDPALL  392
            LDPALL
Sbjct  61   LDPALL  66


 Score = 86.7 bits (213),  Expect(2) = 3e-51
 Identities = 41/46 (89%), Positives = 42/46 (91%), Gaps = 0/46 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIELLTPLCP  531
            RPGRLDRKVEFGLPDLESRTQIFKIHTRTMN ERDI+ ELL  LCP
Sbjct  67   RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCP  112


>gi|92870338|gb|ABE79655.1|  AAA ATPase; 26S proteasome subunit P45; Nucleic acid-binding, 
OB-fold [Medicago truncatula]
Length=402

 Score =  181 bits (458),  Expect(2) = 4e-51
 Identities = 79/128 (61%), Positives = 103/128 (80%), Gaps = 0/128 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GI PPKGVL YGPPGTGKTLLARA+A+  DA F++V+ S ++ KY+GE +R++RE+F  A
Sbjct  172  GIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESSRLIREMFGYA  231

Query  189  RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  368
            R  + CI+F DE+DAIGG RF +G   D E+QRT++E++NQLDGFD  G +K++MATNRP
Sbjct  232  RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKIIMATNRP  291

Query  369  DTLDPALL  392
            D LDPALL
Sbjct  292  DVLDPALL  299


 Score = 40.8 bits (94),  Expect(2) = 4e-51
 Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 0/44 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNWERDIKIELLTPL  525
            RPGRLDRK+E  LP+ +SR +I KIH   +    +I  E +  L
Sbjct  300  RPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKL  343


>gi|24745880|dbj|BAC23035.1| UniGene info 26S proteasome AAA-ATPase subunit RPT4a [Solanum tuberosum]
 gi|76160929|gb|ABA40428.1|  26S proteasome AAA-ATPase subunit RPT4a-like protein [Solanum 
tuberosum]
Length=398

 Score =  182 bits (461),  Expect(2) = 4e-51
 Identities = 80/128 (62%), Positives = 103/128 (80%), Gaps = 0/128 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GI PPKGVL YGPPGTGKTLLARA+A+  DA F++V+ S ++ KY+GE AR++RE+F  A
Sbjct  168  GIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYA  227

Query  189  RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  368
            R  + CI+F DE+DAIGG RF +G   D E+QRT++E++NQLDGFD  G +K++MATNRP
Sbjct  228  RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP  287

Query  369  DTLDPALL  392
            D LDPALL
Sbjct  288  DVLDPALL  295


 Score = 39.7 bits (91),  Expect(2) = 4e-51
 Identities = 17/26 (65%), Positives = 21/26 (80%), Gaps = 0/26 (0%)
 Frame = +1

Query  394  RPGRLDRKVEFGLPDLESRTQIFKIH  471
            RPGRLDRK+E  LP+ +SR +I KIH
Sbjct  296  RPGRLDRKIEIPLPNEQSRMEILKIH  321


>gi|115444877|ref|NP_001046218.1| Gene info Os02g0199900 [Oryza sativa (japonica cultivar-group)]
 gi|11094192|dbj|BAB17625.1| UniGene infoGene info 26S proteasome regulatory particle triple-A ATPase subunit4 [Oryza 
sativa (japonica cultivar-group)]
 gi|46390379|dbj|BAD15843.1| Gene info 26S proteasome regulatory particle triple-A ATPase subunit4 [Oryza 
sativa (japonica cultivar-group)]
 gi|49388371|dbj|BAD25481.1| Gene info 26S proteasome regulatory particle triple-A ATPase subunit4 [Oryza 
sativa (japonica cultivar-group)]
 gi|113535749|dbj|BAF08132.1| Gene info Os02g0199900 [Oryza sativa (japonica cultivar-group)]
Length=400

 Score =  181 bits (458),  Expect(2) = 1e-50
 Identities = 79/128 (61%), Positives = 103/128 (80%), Gaps = 0/128 (0%)
 Frame = +3

Query  9    GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA  188
            GI PPKGVL YGPPGTGKTLLARA+A+  DA F++++ S ++ KY+GE AR++RE+F  A
Sbjct  170  GIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYA  229

Query  189  RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP  368
            R  + CI+F DE+DAIGG RF +G   D E+QRT++E++NQLDGFD  G +K++MATNRP
Sbjct  230  RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDELGKVKMIMATNRP  289

Query  369  DTLDPALL  392
            D LDPALL
Sbjct  290  DVLDPALL  297







  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 16, 2007  5:53 PM
  Number of letters in database: 101,065,385
  Number of sequences in database:  283,397
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283397
Number of Hits to DB: 467
Number of extensions: 6
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 602
Length of database: 101065385
Length adjustment: 108
Effective length of query: 494
Effective length of database: 70458509
Effective search space: 6482182828
Effective search space used: 6482182828
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 65 (29.6 bits)