Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1169017777-27207-133344615842.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,460,989 sequences; 1,533,424,333 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig420 Length=552
Score E Sequences producing significant alignments: (Bits) Value gi|15214303|sp|Q9SW70|SRP_VITRI Stress-related protein >gi|58... 166 6e-41 gi|87162885|gb|ABD28680.1| Rubber elongation factor [Medicago tr 139 5e-33 gi|15227131|ref|NP_182299.1| unknown protein [Arabidopsis tha... 134 3e-31 gi|15230002|ref|NP_187201.1| unknown protein [Arabidopsis tha... 128 2e-29 gi|115462145|ref|NP_001054672.1| Os05g0151300 [Oryza sativa (... 117 3e-26 gi|29367349|gb|AAO72547.1| stress-related protein-like protei... 112 9e-25 gi|115474005|ref|NP_001060601.1| Os07g0671800 [Oryza sativa (... 110 3e-24 gi|22831130|dbj|BAC15991.1| putative stress-related protein [... 109 6e-24 gi|33332330|gb|AAQ11374.1| rubber synthesis protein [Parthenium 108 1e-23 gi|15214302|sp|Q41112|SRP_PHAVU Stress-related protein (PvSRP... 93.6 4e-19 gi|38122474|gb|AAR11448.1| rubber elongation factor [Hevea brasi 92.8 7e-19 gi|37901161|gb|AAP46159.1| REF-like stress related protein 1 [He 92.0 1e-18 gi|29170601|gb|AAO66432.1| small rubber particle protein [Hev... 90.5 3e-18 gi|14423933|sp|O82803|SRPP_HEVBR Small rubber particle protei... 88.6 1e-17 gi|15220426|ref|NP_176904.1| unknown protein [Arabidopsis tha... 87.8 2e-17 gi|132270|sp|P15252|REF_HEVBR Rubber elongation factor protei... 78.2 2e-14 gi|37622210|gb|AAO66433.2| small rubber particle protein [Hevea 62.8 8e-10 gi|79322327|ref|NP_001031354.1| SCRL18 [Arabidopsis thaliana]... 32.0 1.5 gi|1086972|gb|AAB35084.1| major latex allergen [Hevea brasiliens 30.0 5.6 gi|34015318|gb|AAQ56508.1| hypothetical protein OSJNBa0079E14... 29.6 7.3 gi|79313878|ref|NP_001030783.1| SCRL19 [Arabidopsis thaliana]... 29.3 9.6
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 16, 2007 5:53 PM Number of letters in database: 101,065,385 Number of sequences in database: 283,397 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283397 Number of Hits to DB: 325 Number of extensions: 2 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 552 Length of database: 101065385 Length adjustment: 106 Effective length of query: 446 Effective length of database: 71025303 Effective search space: 5539973634 Effective search space used: 5539973634 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 64 (29.3 bits)