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BLASTX 2.2.15 [Oct-15-2006] 
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman 
(1997), "Gapped BLAST and PSI-BLAST: a new generation of 
protein database search programs", Nucleic Acids Res. 25:3389-3402.

RID: 1168926398-28702-51523677783.BLASTQ1


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
           4,458,890 sequences; 1,532,996,420 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs
Taxonomy reports

Query=  Contig1
Length=258

Distribution of 6 Blast Hits on the Query Sequence


                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|115453939|ref|NP_001050570.1|  Os03g0586600 [Oryza sativa (...  33.5    0.23  Gene info
gi|27817987|dbj|BAC55751.1|  putative DNA-directed RNA polymer...  32.0    0.68  Gene info
gi|115471967|ref|NP_001059582.1|  Os07g0463100 [Oryza sativa (...  32.0    0.68  Gene info
gi|115456816|ref|NP_001052008.1|  Os04g0105300 [Oryza sativa (...  29.3    4.4   Gene info
gi|116310721|emb|CAH67518.1|  OSIGBa0092E01.13 [Oryza sativa (ind  28.1    9.8  
gi|38345392|emb|CAD41244.2|  OSJNBa0067K08.21 [Oryza sativa (japo  28.1    9.8   Gene info
Alignments

>gi|115453939|ref|NP_001050570.1| Gene info Os03g0586600 [Oryza sativa (japonica cultivar-group)]
 gi|50399946|gb|AAT76334.1| Gene info putative DNA-directed RNA polymerase II subunit [Oryza sativa 
(japonica cultivar-group)]
 gi|108709558|gb|ABF97353.1| Gene info DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide, 
putative, expressed [Oryza sativa (japonica cultivar-group)]
 gi|113549041|dbj|BAF12484.1| Gene info Os03g0586600 [Oryza sativa (japonica cultivar-group)]
Length=142

 Score = 33.5 bits (75),  Expect = 0.23
 Identities = 13/13 (100%), Positives = 13/13 (100%), Gaps = 0/13 (0%)
 Frame = -2

Query  185  MADDDYNDMDMGY  147
            MADDDYNDMDMGY
Sbjct  1    MADDDYNDMDMGY  13


>gi|27817987|dbj|BAC55751.1| Gene info putative DNA-directed RNA polymerase Iia [Oryza sativa (japonica 
cultivar-group)]
Length=286

 Score = 32.0 bits (71),  Expect = 0.68
 Identities = 12/13 (92%), Positives = 13/13 (100%), Gaps = 0/13 (0%)
 Frame = -2

Query  185  MADDDYNDMDMGY  147
            MA+DDYNDMDMGY
Sbjct  1    MAEDDYNDMDMGY  13


>gi|115471967|ref|NP_001059582.1| Gene info Os07g0463100 [Oryza sativa (japonica cultivar-group)]
 gi|22093730|dbj|BAC07023.1| Gene info putative DNA-directed RNA polymerase Iia [Oryza sativa (japonica 
cultivar-group)]
 gi|113611118|dbj|BAF21496.1| Gene info Os07g0463100 [Oryza sativa (japonica cultivar-group)]
Length=142

 Score = 32.0 bits (71),  Expect = 0.68
 Identities = 12/13 (92%), Positives = 13/13 (100%), Gaps = 0/13 (0%)
 Frame = -2

Query  185  MADDDYNDMDMGY  147
            MA+DDYNDMDMGY
Sbjct  1    MAEDDYNDMDMGY  13


>gi|115456816|ref|NP_001052008.1| Gene info Os04g0105300 [Oryza sativa (japonica cultivar-group)]
 gi|113563579|dbj|BAF13922.1| Gene info Os04g0105300 [Oryza sativa (japonica cultivar-group)]
Length=287

 Score = 29.3 bits (64),  Expect = 4.4
 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 0/33 (0%)
 Frame = -3

Query  220  PPPPKFL*ENLQWRTTTIMTWIWDMRMSHQTLR  122
            PP P  + +  +      +TW+W  R++H  LR
Sbjct  46   PPHPAAVADTARSAVAVALTWVWSARLTHNYLR  78


>gi|116310721|emb|CAH67518.1|  OSIGBa0092E01.13 [Oryza sativa (indica cultivar-group)]
Length=396

 Score = 28.1 bits (61),  Expect = 9.8
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
 Frame = -3

Query  187  QWRTTTIMTWIWDMRMSHQTL--RLKKE--PRKI--WKTITMMMFLWNLLKLRKKKSMI  29
            QW+   + +WIW  +  H  L   LKK+  PRK+  W  I++  ++    + RK+++ +
Sbjct  78   QWKYDDLKSWIWLQKAIHPELDYDLKKKWLPRKMAPWSGISLKKWVKERKQKRKEEARL  136


>gi|38345392|emb|CAD41244.2| Gene info OSJNBa0067K08.21 [Oryza sativa (japonica cultivar-group)]
Length=399

 Score = 28.1 bits (61),  Expect = 9.8
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
 Frame = -3

Query  187  QWRTTTIMTWIWDMRMSHQTL--RLKKE--PRKI--WKTITMMMFLWNLLKLRKKKSMI  29
            QW+   + +WIW  +  H  L   LKK+  PRK+  W  I++  ++    + RK+++ +
Sbjct  78   QWKYDDLKSWIWLQKAIHPELDYDLKKKWLPRKMAPWSGISLKKWVKERKQKRKEEARL  136







  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 220
Number of extensions: 3
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 258
Length of database: 101054579
Length adjustment: 56
Effective length of query: 202
Effective length of database: 85187035
Effective search space: 2555611050
Effective search space used: 2555611050
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 61 (28.1 bits)