RID=1168929612-8827-129961147821.BLASTQ1, Contig114

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168929612-8827-129961147821.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig114
Length=238

Distribution of 15 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|5738542|emb|CAB53034.1|  photosystem I subunit XI precursor [A   101    9e-22 
gi|15235490|ref|NP_193016.1|  unknown protein [Arabidopsis tha...   101    9e-22 
gi|6006283|dbj|BAA84771.1|  photosystem I subunit PSI-L [Arabidop   101    9e-22 
gi|29468504|gb|AAO85557.1|  photosystem I subunit XI [Nicotiana a  97.8    1e-20
gi|1181599|dbj|BAA11677.1|  subunit of photosystem I [Cucumis sat  97.4    1e-20
gi|18202533|sp|Q39654|PSAL_CUCSA  Photosystem I reaction cente...  97.4    1e-20
gi|108862568|gb|ABG21996.1|  Photosystem I reaction center sub...  95.5    5e-20
gi|115488344|ref|NP_001066659.1|  Os12g0420400 [Oryza sativa (...  95.5    5e-20 
gi|87162581|gb|ABD28376.1|  Photosystem I reaction centre, sub...  95.1    6e-20
gi|3914473|sp|Q41385|PSAL_SPIOL  Photosystem I reaction center...  95.1    6e-20
gi|131225|sp|P23993|PSAL_HORVU  Photosystem I reaction center ...  93.6    2e-19 
gi|117662128|gb|ABK55685.1|  PsaL [Cucumis sativus]                82.8    3e-16
gi|119358797|emb|CAL52060.2|  PsaL photosystem I subunit XI pr...  44.7    1e-04
gi|68989115|dbj|BAE06185.1|  photosystem I protein [Fragaria x an  36.6    0.027
gi|67968316|dbj|BAE00216.1|  photosystem II 47 kDa protein [Selag  28.5    7.4

Alignments

 

>gi|5738542|emb|CAB53034.1|  photosystem I subunit XI precursor [Arabidopsis thaliana]
Length=219

 Score =  101 bits (251),  Expect = 9e-22
 Identities = 55/62 (88%), Positives = 60/62 (96%), Gaps = 0/62 (0%)
 Frame = -1

Query  238  VASFKEGEPSTAPSLTLTGRKKEPDQLQTAEGWASftggfffgGISGVTWAYFLLYVLNL  59
            ++SFKEGEPS APSLTLTGRKK+PDQLQTA+GWA FTGGFFFGGISGVTWAYFLLYVL+L
Sbjct  155  ISSFKEGEPSIAPSLTLTGRKKQPDQLQTADGWAKFTGGFFFGGISGVTWAYFLLYVLDL  214

Query  58   PY  53
            PY
Sbjct  215  PY  216


>gi|15235490|ref|NP_193016.1|  unknown protein [Arabidopsis thaliana]
 gi|18203449|sp|Q9SUI4|PSAL_ARATH  Photosystem I reaction center subunit XI, chloroplast precursor 
(PSI-L) (PSI subunit V)
 gi|16226622|gb|AAL16216.1|AF428447_1  AT4g12800/T20K18_150 [Arabidopsis thaliana]
 gi|17933283|gb|AAL48225.1|AF446350_1  AT4g12800/T20K18_150 [Arabidopsis thaliana]
 gi|4586256|emb|CAB40997.1|  probable photosystem I chain XI precursor [Arabidopsis thaliana]
 gi|7267981|emb|CAB78322.1|  probable photosystem I chain XI precursor [Arabidopsis thaliana]
 gi|16649159|gb|AAL24431.1|  probable photosystem I chain XI precursor [Arabidopsis thaliana]
 gi|20453409|gb|AAM19943.1|  AT4g12800/T20K18_150 [Arabidopsis thaliana]
 gi|21592939|gb|AAM64889.1|  probable photosystem I chain XI precursor [Arabidopsis thaliana]
Length=219

 Score =  101 bits (251),  Expect = 9e-22
 Identities = 55/62 (88%), Positives = 60/62 (96%), Gaps = 0/62 (0%)
 Frame = -1

Query  238  VASFKEGEPSTAPSLTLTGRKKEPDQLQTAEGWASftggfffgGISGVTWAYFLLYVLNL  59
            ++SFKEGEPS APSLTLTGRKK+PDQLQTA+GWA FTGGFFFGGISGVTWAYFLLYVL+L
Sbjct  155  ISSFKEGEPSIAPSLTLTGRKKQPDQLQTADGWAKFTGGFFFGGISGVTWAYFLLYVLDL  214

Query  58   PY  53
            PY
Sbjct  215  PY  216


>gi|6006283|dbj|BAA84771.1|  photosystem I subunit PSI-L [Arabidopsis thaliana]
Length=124

 Score =  101 bits (251),  Expect = 9e-22
 Identities = 55/62 (88%), Positives = 60/62 (96%), Gaps = 0/62 (0%)
 Frame = -1

Query  238  VASFKEGEPSTAPSLTLTGRKKEPDQLQTAEGWASftggfffgGISGVTWAYFLLYVLNL  59
            ++SFKEGEPS APSLTLTGRKK+PDQLQTA+GWA FTGGFFFGGISGVTWAYFLLYVL+L
Sbjct  60   ISSFKEGEPSIAPSLTLTGRKKQPDQLQTADGWAKFTGGFFFGGISGVTWAYFLLYVLDL  119

Query  58   PY  53
            PY
Sbjct  120  PY  121


>gi|29468504|gb|AAO85557.1|  photosystem I subunit XI [Nicotiana attenuata]
Length=220

 Score = 97.8 bits (242),  Expect = 1e-20
 Identities = 54/62 (87%), Positives = 59/62 (95%), Gaps = 0/62 (0%)
 Frame = -1

Query  238  VASFKEGEPSTAPSLTLTGRKKEPDQLQTAEGWASftggfffgGISGVTWAYFLLYVLNL  59
            ++SFKEGE STAP+LTLTGRKK PDQLQTAEGW+ FTGGFFFGGISGVTWAYFLLYVL+L
Sbjct  156  ISSFKEGEASTAPALTLTGRKKVPDQLQTAEGWSKFTGGFFFGGISGVTWAYFLLYVLDL  215

Query  58   PY  53
            PY
Sbjct  216  PY  217


>gi|1181599|dbj|BAA11677.1|  subunit of photosystem I [Cucumis sativus]
Length=217

 Score = 97.4 bits (241),  Expect = 1e-20
 Identities = 54/62 (87%), Positives = 57/62 (91%), Gaps = 0/62 (0%)
 Frame = -1

Query  238  VASFKEGEPSTAPSLTLTGRKKEPDQLQTAEGWASftggfffgGISGVTWAYFLLYVLNL  59
            VASF EGEPSTAPSLTLTGRKK PD LQTA+GWA F+GGFFFGGISGV WAYFLLYVL+L
Sbjct  153  VASFNEGEPSTAPSLTLTGRKKTPDPLQTADGWAKFSGGFFFGGISGVIWAYFLLYVLDL  212

Query  58   PY  53
            PY
Sbjct  213  PY  214


>gi|18202533|sp|Q39654|PSAL_CUCSA  Photosystem I reaction center subunit XI, chloroplast precursor 
(PSI-L) (PSI subunit V)
 gi|801740|dbj|BAA09047.1|  PsaL [Cucumis sativus]
Length=217

 Score = 97.4 bits (241),  Expect = 1e-20
 Identities = 54/62 (87%), Positives = 57/62 (91%), Gaps = 0/62 (0%)
 Frame = -1

Query  238  VASFKEGEPSTAPSLTLTGRKKEPDQLQTAEGWASftggfffgGISGVTWAYFLLYVLNL  59
            VASF EGEPSTAPSLTLTGRKK PD LQTA+GWA F+GGFFFGGISGV WAYFLLYVL+L
Sbjct  153  VASFNEGEPSTAPSLTLTGRKKTPDPLQTADGWAKFSGGFFFGGISGVIWAYFLLYVLDL  212

Query  58   PY  53
            PY
Sbjct  213  PY  214


>gi|108862568|gb|ABG21996.1|  Photosystem I reaction center subunit XI, chloroplast precursor, 
putative, expressed [Oryza sativa (japonica cultivar-group)]
Length=199

 Score = 95.5 bits (236),  Expect = 5e-20
 Identities = 54/62 (87%), Positives = 58/62 (93%), Gaps = 0/62 (0%)
 Frame = -1

Query  238  VASFKEGEPSTAPSLTLTGRKKEPDQLQTAEGWASftggfffgGISGVTWAYFLLYVLNL  59
            VASF EGEPSTAP+LTLTGRKKE D+LQTA+GWA FTGGFFFGGISGV WAYFLLYVL+L
Sbjct  135  VASFGEGEPSTAPTLTLTGRKKEADKLQTADGWAKFTGGFFFGGISGVLWAYFLLYVLDL  194

Query  58   PY  53
            PY
Sbjct  195  PY  196


>gi|115488344|ref|NP_001066659.1|  Os12g0420400 [Oryza sativa (japonica cultivar-group)]
 gi|77554828|gb|ABA97624.1|  Photosystem I reaction center subunit XI, chloroplast precursor, 
putative, expressed [Oryza sativa (japonica cultivar-group)]
 gi|113649166|dbj|BAF29678.1|  Os12g0420400 [Oryza sativa (japonica cultivar-group)]
Length=208

 Score = 95.5 bits (236),  Expect = 5e-20
 Identities = 54/62 (87%), Positives = 58/62 (93%), Gaps = 0/62 (0%)
 Frame = -1

Query  238  VASFKEGEPSTAPSLTLTGRKKEPDQLQTAEGWASftggfffgGISGVTWAYFLLYVLNL  59
            VASF EGEPSTAP+LTLTGRKKE D+LQTA+GWA FTGGFFFGGISGV WAYFLLYVL+L
Sbjct  144  VASFGEGEPSTAPTLTLTGRKKEADKLQTADGWAKFTGGFFFGGISGVLWAYFLLYVLDL  203

Query  58   PY  53
            PY
Sbjct  204  PY  205


>gi|87162581|gb|ABD28376.1|  Photosystem I reaction centre, subunit XI PsaL [Medicago truncatula]
 gi|92889327|gb|ABE89826.1|  photosystem I reaction center subunit XI, putative [Medicago 
truncatula]
Length=214

 Score = 95.1 bits (235),  Expect = 6e-20
 Identities = 52/62 (83%), Positives = 58/62 (93%), Gaps = 0/62 (0%)
 Frame = -1

Query  238  VASFKEGEPSTAPSLTLTGRKKEPDQLQTAEGWASftggfffgGISGVTWAYFLLYVLNL  59
            V+SF EG+PS APSLTLTGRKK+PD LQTA+GW+ FTGGFFFGGISGVTWAYFLLYVL+L
Sbjct  150  VSSFNEGDPSIAPSLTLTGRKKQPDPLQTADGWSKFTGGFFFGGISGVTWAYFLLYVLDL  209

Query  58   PY  53
            PY
Sbjct  210  PY  211


>gi|3914473|sp|Q41385|PSAL_SPIOL  Photosystem I reaction center subunit XI, chloroplast precursor 
(PSI-L) (PSI subunit V)
 gi|396275|emb|CAA45775.1|  subunit XI of photosystem I reaction center [Spinacia oleracea]
Length=216

 Score = 95.1 bits (235),  Expect = 6e-20
 Identities = 51/62 (82%), Positives = 59/62 (95%), Gaps = 0/62 (0%)
 Frame = -1

Query  238  VASFKEGEPSTAPSLTLTGRKKEPDQLQTAEGWASftggfffgGISGVTWAYFLLYVLNL  59
            +ASFKEGEPS AP+LTLTGRKK+PDQLQ+A+GWA FTGGFFFGG+SGVTWA FL+YVL+L
Sbjct  152  IASFKEGEPSIAPALTLTGRKKQPDQLQSADGWAKFTGGFFFGGVSGVTWACFLMYVLDL  211

Query  58   PY  53
            PY
Sbjct  212  PY  213


>gi|131225|sp|P23993|PSAL_HORVU  Photosystem I reaction center subunit XI, chloroplast precursor 
(PSI-L) (PSI subunit V)
 gi|167087|gb|AAA62700.1|  photosystem I hydrophobic protein
Length=209

 Score = 93.6 bits (231),  Expect = 2e-19
 Identities = 52/62 (83%), Positives = 56/62 (90%), Gaps = 0/62 (0%)
 Frame = -1

Query  238  VASFKEGEPSTAPSLTLTGRKKEPDQLQTAEGWASftggfffgGISGVTWAYFLLYVLNL  59
            VASF EGEPSTAP LTLTGRKKE D+LQTAEGW+ FTGGFFFGG+SG  WAYFLLYVL+L
Sbjct  145  VASFNEGEPSTAPVLTLTGRKKEADKLQTAEGWSQFTGGFFFGGVSGAVWAYFLLYVLDL  204

Query  58   PY  53
            PY
Sbjct  205  PY  206


>gi|117662128|gb|ABK55685.1|  PsaL [Cucumis sativus]
Length=163

 Score = 82.8 bits (203),  Expect = 3e-16
 Identities = 47/54 (87%), Positives = 49/54 (90%), Gaps = 0/54 (0%)
 Frame = -1

Query  238  VASFKEGEPSTAPSLTLTGRKKEPDQLQTAEGWASftggfffgGISGVTWAYFL  77
            VASF EGEPSTAPSLTLTGRKK PD LQTA+GWA F+GGFFFGGISGV WAYFL
Sbjct  110  VASFNEGEPSTAPSLTLTGRKKTPDPLQTADGWAKFSGGFFFGGISGVIWAYFL  163


>gi|119358797|emb|CAL52060.2|  PsaL photosystem I subunit XI precursor (IC) [Ostreococcus tauri]
Length=202

 Score = 44.7 bits (104),  Expect = 1e-04
 Identities = 27/47 (57%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
 Frame = -1

Query  193  TLTGRKKEPDQLQTAEGWASftggfffgGISGVTWAYFLLYVLNLPY  53
            TL+GR    D LQ++EGWASFT G+  GG+SGV W+Y L  V  LPY
Sbjct  156  TLSGRTIAKDPLQSSEGWASFTSGWLVGGLSGVAWSYVLTQV--LPY  200


>gi|68989115|dbj|BAE06185.1|  photosystem I protein [Fragaria x ananassa]
Length=116

 Score = 36.6 bits (83),  Expect = 0.027
 Identities = 16/28 (57%), Positives = 21/28 (75%), Gaps = 0/28 (0%)
 Frame = -3

Query  236  CIV*GRRAIHRTFFNLDWAEEGARPAAN  153
            CI+ G R IH +FF+L+  +EGARPA N
Sbjct  31   CILQGGRTIHSSFFDLNRPQEGARPAPN  58


>gi|67968316|dbj|BAE00216.1|  photosystem II 47 kDa protein [Selaginella uncinata]
Length=510

 Score = 28.5 bits (62),  Expect = 7.4
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 0/28 (0%)
 Frame = +3

Query  87   AHVTPEIPPKKNPPVKLAHPSAVCSWSG  170
            AH      P ++PPV L H + V  W+G
Sbjct  8    AHTVVSNDPGRSPPVHLMHTAPVSGWAG  35

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 193
Number of extensions: 6
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 238
Length of database: 101054579
Length adjustment: 50
Effective length of query: 188
Effective length of database: 86887129
Effective search space: 2519726741
Effective search space used: 2519726741
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 61 (28.1 bits)