>gi|115478346|ref|NP_001062768.1|  Os09g0281600 [Oryza sativa (japonica cultivar-group)]
 gi|50251642|dbj|BAD29645.1|  splicing factor 4-like protein [Oryza sativa (japonica cultivar-group)]
 gi|113631001|dbj|BAF24682.1|  Os09g0281600 [Oryza sativa (japonica cultivar-group)]
Length=289

 Score =  218 bits (554),  Expect = 1e-56
 Identities = 117/144 (81%), Positives = 128/144 (88%), Gaps = 0/144 (0%)
 Frame = +2

Query  5    PKQSKDEMPPPPSLQGAPLKKGHHMGDYIPPEELEKFLaacndaaaqkaaretaenaKIQ  184
            PKQSKDEMPPPPSLQ    KKGHHMGD+IP EELEKF+A CNDAAAQKA +E AE AKIQ
Sbjct  146  PKQSKDEMPPPPSLQAPSSKKGHHMGDFIPQEELEKFMARCNDAAAQKATKEAAEKAKIQ  205

Query  185  SDNVGHKLLSKMGWKEGEGLGGSRKGISDPIMAGDVKMNNLGVGAHHPGDVTAEDDIYEQ  364
            +DN+GHKLLSKMGW+EGEGLG  R G +DPIMAGDVK ++LGVGA  PG+VT+EDDIYEQ
Sbjct  206  ADNIGHKLLSKMGWREGEGLGSERSGRADPIMAGDVKKDHLGVGAVQPGEVTSEDDIYEQ  265

Query  365  YKKRMMLGYRYRPNPLNNPRKAYY  436
            YKKRMMLGYRYRPNPLNNPRKAYY
Sbjct  266  YKKRMMLGYRYRPNPLNNPRKAYY  289


>gi|18409491|ref|NP_566957.1|  RNA binding / nucleic acid binding [Arabidopsis thaliana]
 gi|75249958|sp|Q94C11|SF04_ARATH  Splicing factor 4-like protein (SF4-like protein)
 gi|14335160|gb|AAK59860.1|  AT3g52120/F4F15_230 [Arabidopsis thaliana]
 gi|20334808|gb|AAM16265.1|  AT3g52120/F4F15_230 [Arabidopsis thaliana]
Length=443

 Score =  211 bits (538),  Expect = 1e-54
 Identities = 117/151 (77%), Positives = 129/151 (85%), Gaps = 7/151 (4%)
 Frame = +2

Query  5    PKQSKDEMPPPPSLQGA-------PLKKGHHMGDYIPPEELEKFLaacndaaaqkaaret  163
            P+QSKDEMPPP SLQG        P K+GHHMGDYIP EEL+KFL+ CNDAAAQKA +E 
Sbjct  293  PRQSKDEMPPPASLQGPSETSSTDPGKRGHHMGDYIPLEELDKFLSKCNDAAAQKATKEA  352

Query  164  aenaKIQSDNVGHKLLSKMGWKEGEGLGGSRKGISDPIMAGDVKMNNLGVGAHHPGDVTA  343
            AE AKIQ+DNVGHKLLSKMGWKEGEG+G SRKG++DPIMAGDVK NNLGVGA  PG+V  
Sbjct  353  AEKAKIQADNVGHKLLSKMGWKEGEGIGSSRKGMADPIMAGDVKTNNLGVGASAPGEVKP  412

Query  344  EDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY  436
            EDDIYEQYKKRMMLGY++RPNPL NPRKAYY
Sbjct  413  EDDIYEQYKKRMMLGYKHRPNPLGNPRKAYY  443


>gi|4678941|emb|CAB41332.1|  gamma response I protein [Arabidopsis thaliana]
Length=1110

 Score =  202 bits (515),  Expect = 5e-52
 Identities = 117/163 (71%), Positives = 129/163 (79%), Gaps = 19/163 (11%)
 Frame = +2

Query  5     PKQSKDEMPPPPSLQGA-------PLKKGHHMGDYIPPEELEKFLaacndaaaqkaaret  163
             P+QSKDEMPPP SLQG        P K+GHHMGDYIP EEL+KFL+ CNDAAAQKA +E 
Sbjct  948   PRQSKDEMPPPASLQGPSETSSTDPGKRGHHMGDYIPLEELDKFLSKCNDAAAQKATKEA  1007

Query  164   aenaKIQSDNVGHKLLSKMGWKE------------GEGLGGSRKGISDPIMAGDVKMNNL  307
             AE AKIQ+DNVGHKLLSKMGWKE            GEG+G SRKG++DPIMAGDVK NNL
Sbjct  1008  AEKAKIQADNVGHKLLSKMGWKEDKELRKLEEWITGEGIGSSRKGMADPIMAGDVKTNNL  1067

Query  308   GVGAHHPGDVTAEDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY  436
             GVGA  PG+V  EDDIYEQYKKRMMLGY++RPNPL NPRKAYY
Sbjct  1068  GVGASAPGEVKPEDDIYEQYKKRMMLGYKHRPNPLGNPRKAYY  1110


>gi|21536687|gb|AAM61019.1|  unknown [Arabidopsis thaliana]
Length=301

 Score = 53.9 bits (128),  Expect = 4e-07
 Identities = 30/61 (49%), Positives = 41/61 (67%), Gaps = 3/61 (4%)
 Frame = +2

Query  176  KIQSDNVGHKLLSKMGWKEGEGLGGSRKGISDPIMAGDVKMNNLGVGAHHPGD-VTAEDD  352
            KI S NVG +LL KMGWK G+GLG   +GI++PI +G ++   LG+G     D  TAE++
Sbjct  63   KISSSNVGFRLLQKMGWK-GKGLGKQEQGITEPIKSG-IRDRRLGLGKQEEDDYFTAEEN  120

Query  353  I  355
            I
Sbjct  121  I  121


>gi|30690349|ref|NP_850884.1|  nucleic acid binding / zinc ion binding [Arabidopsis thaliana]
 gi|30690355|ref|NP_850885.1|  nucleic acid binding / zinc ion binding [Arabidopsis thaliana]
 gi|109946493|gb|ABG48425.1|  At5g26610 [Arabidopsis thaliana]
 gi|110739203|dbj|BAF01516.1|  hypothetical protein [Arabidopsis thaliana]
Length=301

 Score = 53.9 bits (128),  Expect = 4e-07
 Identities = 30/61 (49%), Positives = 41/61 (67%), Gaps = 3/61 (4%)
 Frame = +2

Query  176  KIQSDNVGHKLLSKMGWKEGEGLGGSRKGISDPIMAGDVKMNNLGVGAHHPGD-VTAEDD  352
            KI S NVG +LL KMGWK G+GLG   +GI++PI +G ++   LG+G     D  TAE++
Sbjct  63   KISSSNVGFRLLQKMGWK-GKGLGKQEQGITEPIKSG-IRDRRLGLGKQEEDDYFTAEEN  120

Query  353  I  355
            I
Sbjct  121  I  121


>gi|116308827|emb|CAH65966.1|  OSIGBa0112G01.4 [Oryza sativa (indica cultivar-group)]
Length=299

 Score = 53.1 bits (126),  Expect = 6e-07
 Identities = 29/61 (47%), Positives = 42/61 (68%), Gaps = 3/61 (4%)
 Frame = +2

Query  176  KIQSDNVGHKLLSKMGWKEGEGLGGSRKGISDPIMAGDVKMNNLGVGAHHPGD-VTAEDD  352
            ++ S NVG +LL KMGWK G+GLG + +GI++PI AG ++   LGVG     D  T+ED+
Sbjct  58   QLTSSNVGFRLLQKMGWK-GKGLGKNEQGITEPIKAG-IRDAKLGVGKQEQDDFFTSEDN  115

Query  353  I  355
            +
Sbjct  116  V  116


>gi|115456882|ref|NP_001052041.1|  Os04g0115400 [Oryza sativa (japonica cultivar-group)]
 gi|38346000|emb|CAE01947.2|  OSJNBa0073L13.10 [Oryza sativa (japonica cultivar-group)]
 gi|113563612|dbj|BAF13955.1|  Os04g0115400 [Oryza sativa (japonica cultivar-group)]
Length=345

 Score = 53.1 bits (126),  Expect = 6e-07
 Identities = 29/61 (47%), Positives = 42/61 (68%), Gaps = 3/61 (4%)
 Frame = +2

Query  176  KIQSDNVGHKLLSKMGWKEGEGLGGSRKGISDPIMAGDVKMNNLGVGAHHPGD-VTAEDD  352
            ++ S NVG +LL KMGWK G+GLG + +GI++PI AG ++   LGVG     D  T+ED+
Sbjct  58   QLTSSNVGFRLLQKMGWK-GKGLGKNEQGITEPIKAG-IRDAKLGVGKQEQDDFFTSEDN  115

Query  353  I  355
            +
Sbjct  116  V  116


>gi|87241357|gb|ABD33215.1|  IMP dehydrogenase/GMP reductase [Medicago truncatula]
Length=436

 Score = 51.6 bits (122),  Expect = 2e-06
 Identities = 29/60 (48%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
 Frame = +2

Query  179  IQSDNVGHKLLSKMGWKEGEGLGGSRKGISDPIMAGDVKMNNLGVGAHHPGD-VTAEDDI  355
            I S N+G KLL KMGWK G+GLG + +GI +PI +G ++   LGVG     D  TAE+++
Sbjct  194  ITSSNIGFKLLQKMGWK-GKGLGKNEQGIVEPIKSG-IRDPRLGVGKQEEDDFFTAEENV  251


>gi|15231192|ref|NP_190803.1|  nucleic acid binding [Arabidopsis thaliana]
 gi|10045568|emb|CAC07926.1|  putative protein [Arabidopsis thaliana]
Length=180

 Score = 51.2 bits (121),  Expect = 2e-06
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
 Frame = +2

Query  179  IQSDNVGHKLLSKMGWKEGEGLGGSRKGISDPIMAGDVKMNNLGVGAHHPG---DVTAED  349
            I S N+G +LL K GWKEG GLG + +GI  P+ A + K N  G+GA  P        +D
Sbjct  77   ISSSNIGFQLLKKHGWKEGTGLGITEQGILVPLQA-EPKHNKQGLGAEKPAKRKPAQPQD  135

Query  350  DIYEQYKKR  376
              +E+  K+
Sbjct  136  TAFEEVSKK  144


>gi|30682456|ref|NP_850794.1|  nucleic acid binding [Arabidopsis thaliana]
 gi|15294222|gb|AAK95288.1|AF410302_1  AT5g08540/MAH20_10 [Arabidopsis thaliana]
 gi|20453281|gb|AAM19879.1|  AT5g08540/MAH20_10 [Arabidopsis thaliana]
Length=116

 Score = 50.4 bits (119),  Expect = 4e-06
 Identities = 26/50 (52%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
 Frame = +2

Query  179  IQSDNVGHKLLSKMGWKEGEGLGGSRKGISDPIMAGDVKMNNLGVGAHHP  328
            I S N+G +LL K GWKEG GLG + +GI  P+ A + K N  GVGA  P
Sbjct  14   INSSNIGFQLLKKHGWKEGTGLGIAEQGILVPLQA-EPKHNKRGVGAKQP  62


>gi|18415848|ref|NP_568199.1|  nucleic acid binding [Arabidopsis thaliana]
 gi|26451562|dbj|BAC42878.1|  unknown protein [Arabidopsis thaliana]
Length=141

 Score = 50.4 bits (119),  Expect = 4e-06
 Identities = 26/50 (52%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
 Frame = +2

Query  179  IQSDNVGHKLLSKMGWKEGEGLGGSRKGISDPIMAGDVKMNNLGVGAHHP  328
            I S N+G +LL K GWKEG GLG + +GI  P+ A + K N  GVGA  P
Sbjct  39   INSSNIGFQLLKKHGWKEGTGLGIAEQGILVPLQA-EPKHNKRGVGAKQP  87


>gi|9759348|dbj|BAB10003.1|  unnamed protein product [Arabidopsis thaliana]
Length=471

 Score = 50.4 bits (119),  Expect = 4e-06
 Identities = 26/50 (52%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
 Frame = +2

Query  179  IQSDNVGHKLLSKMGWKEGEGLGGSRKGISDPIMAGDVKMNNLGVGAHHP  328
            I S N+G +LL K GWKEG GLG + +GI  P+ A + K N  GVGA  P
Sbjct  14   INSSNIGFQLLKKHGWKEGTGLGIAEQGILVPLQA-EPKHNKRGVGAKQP  62


>gi|119720762|gb|ABL97951.1|  nucleic acid binding protein [Brassica rapa]
Length=122

 Score = 49.7 bits (117),  Expect = 7e-06
 Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
 Frame = +2

Query  179  IQSDNVGHKLLSKMGWKEGEGLGGSRKGISDPIMAGDVKMNNLGVGA  319
            I S N+G +LL K GWKEG GLG + +GI  P+ A ++K N  G+GA
Sbjct  14   ISSSNIGFQLLKKQGWKEGTGLGVAEQGILVPVQA-ELKNNKRGLGA  59


>gi|21553836|gb|AAM62929.1|  unknown [Arabidopsis thaliana]
Length=141

 Score = 49.3 bits (116),  Expect = 9e-06
 Identities = 25/50 (50%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
 Frame = +2

Query  179  IQSDNVGHKLLSKMGWKEGEGLGGSRKGISDPIMAGDVKMNNLGVGAHHP  328
            I S N+G +LL K GWKEG GLG + +GI  P+ A + K N  G+GA  P
Sbjct  39   INSSNIGFQLLKKHGWKEGTGLGIAEQGILVPLQA-EPKHNKRGLGAKQP  87


>gi|115482670|ref|NP_001064928.1|  Os10g0491900 [Oryza sativa (japonica cultivar-group)]
 gi|10140699|gb|AAG13533.1|AC023240_6  unknown protein [Oryza sativa (japonica cultivar-group)]
 gi|31432814|gb|AAP54401.1|  G-patch domain containing protein, expressed [Oryza sativa (japonica 
cultivar-group)]
 gi|113639537|dbj|BAF26842.1|  Os10g0491900 [Oryza sativa (japonica cultivar-group)]
Length=113

 Score = 47.8 bits (112),  Expect = 3e-05
 Identities = 24/50 (48%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +2

Query  179  IQSDNVGHKLLSKMGWKEGEGLGGSRKGISDPIMAGDVKMNNLGVGAHHP  328
            I S NVG +LL K GWKEG GLG   +G  +P+    VK N  G+G+  P
Sbjct  4    IGSSNVGFQLLKKSGWKEGTGLGAQEQGRLEPV-ESRVKNNKRGLGSKEP  52


>gi|49387752|dbj|BAD26240.1|  putative RNA-binding protein 10 [Oryza sativa (japonica cultivar-group)]
Length=928

 Score = 46.6 bits (109),  Expect = 6e-05
 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
 Frame = +2

Query  179  IQSDNVGHKLLSKMGWKEGEGLGGSRKGISDPIMAGDVKMN-NLGVGAHHPGDVTAEDDI  355
            I   NVG+++L  MGW+EG GLG +  GI +P+ A  V +   LG       D + E   
Sbjct  849  IDESNVGNRILRNMGWQEGLGLGKTGSGIKEPVQAKSVDVRAGLGSQQRKSSDPSLEAQA  908

Query  356  YEQYK----KRMMLGYR  394
             + YK    K+ M  +R
Sbjct  909  GDSYKTIIQKKAMARFR  925


>gi|116000574|emb|CAL50254.1|  Telomerase elongation inhibitor/RNA maturation protein PINX1 
(ISS) [Ostreococcus tauri]
Length=408

 Score = 46.2 bits (108),  Expect = 7e-05
 Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
 Frame = +2

Query  179  IQSDNVGHKLLSKMGWKEGEGLGGSRKGISDPIMAGDVKMNNLGVGAHHPGDVTAE  346
            ++ D  G +LLSKMGW EG+GLG ++ GI+  + A   +M+ +GVGA    D + +
Sbjct  25   VERDGFGMRLLSKMGWVEGKGLGKNKDGIATHVRA-KKRMDFVGVGADARNDASGK  79


>gi|6692106|gb|AAF24571.1|AC007764_13  F22C12.25 [Arabidopsis thaliana]
Length=420

 Score = 43.5 bits (101),  Expect = 5e-04
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
 Frame = +2

Query  179  IQSDNVGHKLLSKMGWKEGEGLGGSRKGISDPIMAGDVKMNNLGVGAHHPG----DVTAE  346
            I  D+   KL+  MGW+EGEGLG  ++GI   +   + K +  GVG   P     D T  
Sbjct  13   ICKDSAAFKLMKSMGWEEGEGLGKDKQGIKGYVRVTN-KQDTSGVGLDKPNPWAFDTTQF  71

Query  347  DDIYEQYK  370
            D+I ++ K
Sbjct  72   DNILKKLK  79


>gi|79320606|ref|NP_001031225.1|  nucleic acid binding [Arabidopsis thaliana]
Length=389

 Score = 43.5 bits (101),  Expect = 5e-04
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
 Frame = +2

Query  179  IQSDNVGHKLLSKMGWKEGEGLGGSRKGISDPIMAGDVKMNNLGVGAHHPG----DVTAE  346
            I  D+   KL+  MGW+EGEGLG  ++GI   +   + K +  GVG   P     D T  
Sbjct  13   ICKDSAAFKLMKSMGWEEGEGLGKDKQGIKGYVRVTN-KQDTSGVGLDKPNPWAFDTTQF  71

Query  347  DDIYEQYK  370
            D+I ++ K
Sbjct  72   DNILKKLK  79


>gi|18407934|ref|NP_564820.1|  nucleic acid binding [Arabidopsis thaliana]
 gi|15810008|gb|AAL06931.1|  At1g63980/F22C12_9 [Arabidopsis thaliana]
 gi|27363372|gb|AAO11605.1|  At1g63980/F22C12_9 [Arabidopsis thaliana]
Length=391

 Score = 43.5 bits (101),  Expect = 5e-04
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
 Frame = +2

Query  179  IQSDNVGHKLLSKMGWKEGEGLGGSRKGISDPIMAGDVKMNNLGVGAHHPG----DVTAE  346
            I  D+   KL+  MGW+EGEGLG  ++GI   +   + K +  GVG   P     D T  
Sbjct  13   ICKDSAAFKLMKSMGWEEGEGLGKDKQGIKGYVRVTN-KQDTSGVGLDKPNPWAFDTTQF  71

Query  347  DDIYEQYK  370
            D+I ++ K
Sbjct  72   DNILKKLK  79


>gi|115450431|ref|NP_001048816.1|  Os03g0125300 [Oryza sativa (japonica cultivar-group)]
 gi|108705949|gb|ABF93744.1|  D111/G-patch domain-containing protein, putative, expressed [Oryza 
sativa (japonica cultivar-group)]
 gi|113547287|dbj|BAF10730.1|  Os03g0125300 [Oryza sativa (japonica cultivar-group)]
Length=384

 Score = 42.7 bits (99),  Expect = 8e-04
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
 Frame = +2

Query  179  IQSDNVGHKLLSKMGWKEGEGLGGSRKGISDPIMAGDVKMNNLGVGAHHPG-----DVTA  343
            I   +   +L+ +MGW+EGEGLG  ++GI   +   + K + LGVG   P      D T 
Sbjct  13   IARQSAAFRLMKQMGWEEGEGLGKDKQGIKGHVRVKN-KQDTLGVGVDSPHNKWVYDTTQ  71

Query  344  EDDIYEQYK  370
             D+I ++ K
Sbjct  72   FDNILKKLK  80


>gi|112799353|gb|ABI23000.1|  putative RNA-binding protein [Ammopiptanthus mongolicus]
Length=264

 Score = 42.4 bits (98),  Expect = 0.001
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
 Frame = +2

Query  179  IQSDNVGHKLLSKMGWKEGEGLGGSRKGISDPIMAGDVKMNNLGVGAHHPG-DVTAEDDI  355
            I  +NVG+++L  MGW+EG GLG    G+ +P+    V+ N  G+G+     D + E   
Sbjct  184  IDENNVGNRMLRNMGWQEGLGLGKDGSGMIEPVQTQAVE-NRAGLGSQQKKLDPSLEVQA  242

Query  356  YEQYK  370
             + YK
Sbjct  243  GDSYK  247


>gi|3047080|gb|AAC13593.1|  contains similarity to Arabidopsis thaliana DNA-damage-repair/tolerance 
resistance protein DRT111 (SW:P42698)
Length=287

 Score = 42.0 bits (97),  Expect = 0.001
 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
 Frame = +2

Query  179  IQSDNVGHKLLSKMGWKEGEGLGGSRKGISDPIMAGDVKMNNLGVGAHHPGD-VTAEDDI  355
            +  ++V    L KMGWK G+GLG   +GI++PI +G ++   LG+G     D  TAE++I
Sbjct  50   VDLEDVEQASLDKMGWK-GKGLGKQEQGITEPIKSG-IRDRRLGLGKQEEDDYFTAEENI  107


>gi|79444306|ref|NP_190991.2|  nucleic acid binding [Arabidopsis thaliana]
 gi|17979131|gb|AAL49823.1|  unknown protein [Arabidopsis thaliana]
 gi|20465339|gb|AAM20073.1|  unknown protein [Arabidopsis thaliana]
Length=1007

 Score = 41.6 bits (96),  Expect = 0.002
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 0/38 (0%)
 Frame = +2

Query  179  IQSDNVGHKLLSKMGWKEGEGLGGSRKGISDPIMAGDV  292
            I   NVG+++L  MGW EG GLG    G+ +P+ A  V
Sbjct  926  IDESNVGNRMLRNMGWHEGSGLGKDGSGMKEPVQAQGV  963


>gi|6822069|emb|CAB70997.1|  putative protein [Arabidopsis thaliana]
Length=1105

 Score = 41.6 bits (96),  Expect = 0.002
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 0/38 (0%)
 Frame = +2

Query  179   IQSDNVGHKLLSKMGWKEGEGLGGSRKGISDPIMAGDV  292
             I   NVG+++L  MGW EG GLG    G+ +P+ A  V
Sbjct  1024  IDESNVGNRMLRNMGWHEGSGLGKDGSGMKEPVQAQGV  1061


>gi|15220757|ref|NP_174336.1|  DRT111; nucleic acid binding [Arabidopsis thaliana]
 gi|20141383|sp|P42698|DR111_ARATH  DNA-damage-repair/toleration protein DRT111, chloroplast precursor
 gi|6634771|gb|AAF19751.1|AC009917_10  Strong similarity to gi|1169200 DNA-Damage-Repair/Toleration 
protein (DRT111) precurser, and contains a G-patch PF|01585 
domain and RNA recognition PF|00076 motif.  EST gb|AA395591 
comes from this gene. [Arabidopsis thaliana]
 gi|15028005|gb|AAK76533.1|  putative DNA damage repair protein [Arabidopsis thaliana]
 gi|20259641|gb|AAM14338.1|  putative DNA damage repair protein [Arabidopsis thaliana]
Length=387

 Score = 41.6 bits (96),  Expect = 0.002
 Identities = 15/27 (55%), Positives = 24/27 (88%), Gaps = 0/27 (0%)
 Frame = +2

Query  203  KLLSKMGWKEGEGLGGSRKGISDPIMA  283
            ++++KMGWK+G+GLG S +GI+ P+MA
Sbjct  220  RMMAKMGWKQGQGLGKSEQGITTPLMA  246


>gi|85363142|gb|ABC69949.1|  STIP [Chlamydomonas reinhardtii]
Length=844

 Score = 40.4 bits (93),  Expect = 0.004
 Identities = 19/41 (46%), Positives = 29/41 (70%), Gaps = 3/41 (7%)
 Frame = +2

Query  194  VGHKLLSKMGWKEGEGLGGSRKGISDPIMAGDVKMNNLGVG  316
            +G KLL KMG+K GEGLG +++GI+ P+   + +M   G+G
Sbjct  194  IGLKLLEKMGYKAGEGLGRNKQGIARPV---EARMRPKGMG  231


>gi|15230903|ref|NP_191350.1|  nucleic acid binding [Arabidopsis thaliana]
 gi|6729534|emb|CAB67619.1|  putative protein [Arabidopsis thaliana]
 gi|46931310|gb|AAT06459.1|  At3g57910 [Arabidopsis thaliana]
 gi|62320600|dbj|BAD95245.1|  putative protein [Arabidopsis thaliana]
Length=265

 Score = 40.4 bits (93),  Expect = 0.004
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
 Frame = +2

Query  179  IQSDNVGHKLLSKMGWKEGEGLGGSRKGISDPIMAGDVKMNNLGVGAHHP-GDVTAEDDI  355
            I   N+G KLL +MG+K G  LG    G ++P+   D++ +  GVG   P  +   +++I
Sbjct  91   IGESNIGFKLLKQMGYKPGSALGKQGSGRAEPVTM-DIRRSRAGVGREDPHKEKKKKEEI  149

Query  356  YEQYKKR  376
              + +KR
Sbjct  150  EAENEKR  156


>gi|166694|gb|AAA73382.1|  [Arabidopsis thaliana recombination and DNA-damage resistance 
protein (DRT111) mRNA, complete cds.], gene product
Length=383

 Score = 40.0 bits (92),  Expect = 0.005
 Identities = 15/27 (55%), Positives = 22/27 (81%), Gaps = 0/27 (0%)
 Frame = +2

Query  203  KLLSKMGWKEGEGLGGSRKGISDPIMA  283
            +++ KMGWK+G+GLG S +GI  P+MA
Sbjct  216  RMMPKMGWKQGQGLGKSEQGIPTPLMA  242


>gi|115434760|ref|NP_001042138.1|  Os01g0170100 [Oryza sativa (japonica cultivar-group)]
 gi|113531669|dbj|BAF04052.1|  Os01g0170100 [Oryza sativa (japonica cultivar-group)]
Length=462

 Score = 39.7 bits (91),  Expect = 0.007
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query  191  NVGHKLLSKMGWKEGEGLGGSRKGISDPIMAGDVKMNNLGVG  316
            N   K++  MGWKEGE LG S KG+ +PI    V  +  G+G
Sbjct  417  NSAKKMMENMGWKEGEALGKSTKGMVEPIQP-TVNKHGAGLG  457


>gi|55296332|dbj|BAD68248.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length=450

 Score = 39.7 bits (91),  Expect = 0.007
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query  191  NVGHKLLSKMGWKEGEGLGGSRKGISDPIMAGDVKMNNLGVG  316
            N   K++  MGWKEGE LG S KG+ +PI    V  +  G+G
Sbjct  405  NSAKKMMENMGWKEGEALGKSTKGMVEPIQP-TVNKHGAGLG  445


>gi|116055099|emb|CAL57495.1|  Tuftelin-interacting protein TIP39, contains G-patch domain (ISS) 
[Ostreococcus tauri]
Length=1197

 Score = 38.9 bits (89),  Expect = 0.012
 Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = +2

Query  194  VGHKLLSKMGWKEGEGLGGSRKGISDPIMAGDVKMNNLGVG  316
            +G KLL KMG+K+GEGLG    GIS  +    ++  N+G+G
Sbjct  130  IGMKLLEKMGYKKGEGLGKGASGISRALET-QLRPKNMGMG  169


>gi|30689939|ref|NP_195140.2|  nucleic acid binding [Arabidopsis thaliana]
Length=418

 Score = 38.9 bits (89),  Expect = 0.012
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +2

Query  185  SDNVGHKLLSKMGWKEGEGLGGSRKGISDPIMAGDVKMNNLGVG  316
            S +   +++  MGWKEGE LG + KG+ +PI A      N+G+G
Sbjct  369  SGSYARRIMGNMGWKEGETLGKNTKGLVEPIQAVG-NTGNVGLG  411


>gi|115437160|ref|NP_001043226.1|  Os01g0526100 [Oryza sativa (japonica cultivar-group)]
 gi|113532757|dbj|BAF05140.1|  Os01g0526100 [Oryza sativa (japonica cultivar-group)]
Length=373

 Score = 38.1 bits (87),  Expect = 0.020
 Identities = 13/27 (48%), Positives = 23/27 (85%), Gaps = 0/27 (0%)
 Frame = +2

Query  203  KLLSKMGWKEGEGLGGSRKGISDPIMA  283
            +++++MGWKEG+GLG   +GI+ P++A
Sbjct  204  RMMARMGWKEGQGLGKQEQGITAPLVA  230


>gi|20521490|dbj|BAB91997.1|  putative DNA-damage repair protein DRT111 precursor [Oryza sativa 
(japonica cultivar-group)]
 gi|21328134|dbj|BAC00713.1|  putative DNA-damage repair protein DRT111 precursor [Oryza sativa 
(japonica cultivar-group)]
Length=368

 Score = 38.1 bits (87),  Expect = 0.020
 Identities = 13/27 (48%), Positives = 23/27 (85%), Gaps = 0/27 (0%)
 Frame = +2

Query  203  KLLSKMGWKEGEGLGGSRKGISDPIMA  283
            +++++MGWKEG+GLG   +GI+ P++A
Sbjct  204  RMMARMGWKEGQGLGKQEQGITAPLVA  230


>gi|16305113|gb|AAL16979.1|  50kD gamma zein [Zea mays]
Length=295

 Score = 37.7 bits (86),  Expect = 0.026
 Identities = 30/111 (27%), Positives = 41/111 (36%), Gaps = 9/111 (8%)
 Frame = -2

Query  353  YHPLQSHLQDDEHQPPNCSSLHHQP*SDLKYPFWSPLNPHLLSNPFLTKVYAQHYQIESL  174
            +HP Q H Q  +HQPP     HHQ     +         H        +V+ Q  Q +  
Sbjct  37   HHPQQHHPQKQQHQPP---PQHHQQQQHQQQQVHMQPQKHQQQQ----EVHVQQQQQQPQ  89

Query  173  HSLQSPVQLFEQQHRCRQPKTFQALLVGYNHPCDDLSSKELLEGKEVEASH  21
            H  Q   Q  +QQH+C   +       G  H      S E  +G+  E  H
Sbjct  90   HQQQQQQQQHQQQHQCEGQQQHHQQSQG--HVQQHEQSHEQHQGQSHEQQH  138


>gi|15227926|ref|NP_181762.1|  nucleic acid binding [Arabidopsis thaliana]
 gi|4567305|gb|AAD23716.1|  hypothetical protein [Arabidopsis thaliana]
Length=752

 Score = 36.2 bits (82),  Expect = 0.076
 Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
 Frame = +2

Query  185  SDNVGHKLLSKMGWKEGEGLGGSRKGISDPIMAGDVKMNNLGVG  316
            S  +G KLL KMG+K G GLG +++GI  PI    ++  N+G+G
Sbjct  103  SGGIGMKLLEKMGYK-GRGLGKNQQGIVAPIEV-QLRPKNMGMG  144


>gi|20306|emb|CAA43295.1|  prolamin [Oryza sativa (japonica cultivar-group)]
Length=158

 Score = 36.2 bits (82),  Expect = 0.076
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
 Frame = -2

Query  350  HPLQSHLQDDEHQPPNCSSLHHQP*SDLKYPFWSPLNPHLLSNPFL-------TKVYAQH  192
            + LQSHLQ  +     CS    Q  S +  PFW P    L++N  +        ++ AQ 
Sbjct  31   YQLQSHLQLQQQVLSPCSEFVRQQHSIVATPFWQPATFQLINNQVMQQQCCQQLRLVAQQ  90

Query  191  YQIESLHSLQSPVQLFEQQ  135
               +++ S+Q+ VQ  + Q
Sbjct  91   SHYQAISSVQAIVQQLQLQ  109


>gi|18398662|ref|NP_566359.1|  nucleic acid binding [Arabidopsis thaliana]
 gi|6681334|gb|AAF23251.1|AC015985_9  hypothetical protein [Arabidopsis thaliana]
 gi|15982781|gb|AAL09738.1|  AT3g09850/F8A24_10 [Arabidopsis thaliana]
 gi|23308485|gb|AAN18212.1|  At3g09850/F8A24_10 [Arabidopsis thaliana]
Length=781

 Score = 35.8 bits (81),  Expect = 0.100
 Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
 Frame = +2

Query  176  KIQSDNVGHKLLSKMGWKEGEGLGGSRKGISDPIMAGDVKMNNLGVG  316
            ++ +   G K+++KMG+ +G GLG   KGI+ PI A   +  +LG+G
Sbjct  632  EVHTRGFGSKMMAKMGFIDGGGLGKDGKGIAQPIEAVQ-RPKSLGLG  677


 Score = 32.3 bits (72),  Expect = 1.1
 Identities = 12/29 (41%), Positives = 22/29 (75%), Gaps = 0/29 (0%)
 Frame = +2

Query  197  GHKLLSKMGWKEGEGLGGSRKGISDPIMA  283
            G +++++MG+ EG GLG   +GI +P++A
Sbjct  740  GSRMMARMGFVEGSGLGRESQGIVNPLVA  768


>gi|15220011|ref|NP_173150.1|  nucleic acid binding [Arabidopsis thaliana]
 gi|5734758|gb|AAD50023.1|AC007651_18  Similar to tuftelin-interacting protein [Arabidopsis thaliana]
Length=849

 Score = 35.8 bits (81),  Expect = 0.100
 Identities = 20/41 (48%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
 Frame = +2

Query  194  VGHKLLSKMGWKEGEGLGGSRKGISDPIMAGDVKMNNLGVG  316
            +G KLL KMG+K G GLG +++GI  PI A  ++  N+G+G
Sbjct  203  IGMKLLEKMGYK-GGGLGKNQQGIVAPIEA-QLRPKNMGMG  241


>gi|115449171|ref|NP_001048365.1|  Os02g0793000 [Oryza sativa (japonica cultivar-group)]
 gi|47497138|dbj|BAD19187.1|  zinc finger (CCCH-type) protein-like [Oryza sativa (japonica 
cultivar-group)]
 gi|47497585|dbj|BAD19655.1|  zinc finger (CCCH-type) protein-like [Oryza sativa (japonica 
cultivar-group)]
 gi|113537896|dbj|BAF10279.1|  Os02g0793000 [Oryza sativa (japonica cultivar-group)]
Length=504

 Score = 35.4 bits (80),  Expect = 0.13
 Identities = 15/28 (53%), Positives = 22/28 (78%), Gaps = 0/28 (0%)
 Frame = +2

Query  194  VGHKLLSKMGWKEGEGLGGSRKGISDPI  277
            V  K+++KMG++EG GLG S +G+ DPI
Sbjct  307  VASKMMAKMGYREGMGLGVSGQGMLDPI  334


>gi|116059311|emb|CAL55018.1|  Tuftelin-interacting protein TIP39, contains G-patch domain (ISS) 
[Ostreococcus tauri]
Length=328

 Score = 34.3 bits (77),  Expect = 0.29
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +2

Query  197  GHKLLSKMGWKEGEGLGGSRKGISDPIMAGDVKMNNLGVGA  319
            G ++L++ G+K G GLG   +GI +P+ A + +    G+GA
Sbjct  289  GSRILARFGFKPGSGLGRENQGIVEPLSA-ETRAKRAGLGA  328


>gi|115475720|ref|NP_001061456.1|  Os08g0288500 [Oryza sativa (japonica cultivar-group)]
 gi|38175640|dbj|BAD01347.1|  unknown protein [Oryza sativa (japonica cultivar-group)]
 gi|38175656|dbj|BAD01361.1|  unknown protein [Oryza sativa (japonica cultivar-group)]
 gi|113623425|dbj|BAF23370.1|  Os08g0288500 [Oryza sativa (japonica cultivar-group)]
Length=742

 Score = 34.3 bits (77),  Expect = 0.29
 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
 Frame = +2

Query  176  KIQSDNVGHKLLSKMGWKEGEGLGGSRKGISDPIMAGDVKMNNLGVGAHHPGDVTAEDDI  355
            ++ +   G K+++KMG+ EG GLG   +G+  PI     +  +LG+G          D  
Sbjct  607  EMHTKGFGSKMMAKMGFIEGTGLGKDGQGMMQPIQPIQ-RPKSLGLGVEF-------DSE  658

Query  356  YEQYKKRMMLGYRYRPNPLNNPRK  427
             E  K R     + R  P  N RK
Sbjct  659  AEAIKARSEPPTKARSEPWRNLRK  682


 Score = 33.5 bits (75),  Expect = 0.49
 Identities = 16/41 (39%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
 Frame = +2

Query  197  GHKLLSKMGWKEGEGLGGSRKGISDPIMAGDVKMNNLGVGA  319
            G K++++MG+ EG GLG   +GI +P+ A   +  ++G+GA
Sbjct  699  GSKMMARMGFVEGSGLGKDGQGIVNPLTAVR-RPKSMGLGA  738


>gi|92870387|gb|ABE79690.1|  D111/G-patch [Medicago truncatula]
Length=516

 Score = 33.5 bits (75),  Expect = 0.49
 Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 10/45 (22%)
 Frame = +2

Query  206  LLSKMGWKE---------GEGLGGSRKGISDPIM-AGDVKMNNLG  310
            LL  MGWKE         GEGLG S KG+ +PI   G++    LG
Sbjct  468  LLEGMGWKEIVYVPTLVQGEGLGSSTKGLVEPIQPVGNIGSAGLG  512


>gi|15224627|ref|NP_180056.1|  nucleic acid binding [Arabidopsis thaliana]
 gi|4559368|gb|AAD23029.1|  hypothetical protein [Arabidopsis thaliana]
 gi|110738260|dbj|BAF01059.1|  hypothetical protein [Arabidopsis thaliana]
Length=497

 Score = 33.5 bits (75),  Expect = 0.49
 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
 Frame = +2

Query  194  VGHKLLSKMGWKEGEGLGGSRKGISDPIMAGDV-KMNNLGVGAHH--PGDVTAEDDIYEQ  364
            +  K+++ MG++EG GLG S +GI +PI+   +    +L     H   G+  +E    +Q
Sbjct  303  IASKMMASMGYREGMGLGVSGQGILNPILVKVLPAKRSLDYALEHIRNGECKSE----KQ  358

Query  365  YKKRMMLGYRYRPNPLNNPRKA  430
             KKR   G R R        KA
Sbjct  359  KKKRSRGGKRKRGKKFAEAAKA  380


>gi|115471107|ref|NP_001059152.1|  Os07g0206500 [Oryza sativa (japonica cultivar-group)]
 gi|8237371|gb|AAF73991.1|AF156714_1  prolamin [Oryza sativa]
 gi|4126691|dbj|BAA36697.1|  prolamin [Oryza sativa]
 gi|34393307|dbj|BAC83236.1|  13 kDa prolamin precursor [Oryza sativa (japonica cultivar-group)]
 gi|113610688|dbj|BAF21066.1|  Os07g0206500 [Oryza sativa (japonica cultivar-group)]
 gi|119394850|gb|ABL74537.1|  prolamin [Oryza sativa (japonica cultivar-group)]
Length=156

 Score = 33.5 bits (75),  Expect = 0.49
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
 Frame = -2

Query  350  HPLQSHLQDDEHQPPNCSSLHHQP*SDLKYPFWSPLNPHLLSNPFL-------TKVYAQH  192
            + LQSHL   +     CS    Q  S +  PFW P    L++N  +        ++ AQ 
Sbjct  31   YQLQSHLLLQQQVLSPCSEFVRQQHSIVATPFWQPATFQLINNQVMQQQCCQQLRLVAQQ  90

Query  191  YQIESLHSLQSPVQLFEQQ  135
               +++ S+Q+ VQ  + Q
Sbjct  91   SHYQAISSVQAIVQQLQLQ  109


>gi|116058588|emb|CAL54295.1|  Telomerase elongation inhibitor/RNA maturation protein PINX1 
(ISS) [Ostreococcus tauri]
Length=407

 Score = 33.1 bits (74),  Expect = 0.65
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 0/29 (0%)
 Frame = +2

Query  197  GHKLLSKMGWKEGEGLGGSRKGISDPIMA  283
            G ++++ MGW  G+GLG  R G+  PI A
Sbjct  78   GARVMTSMGWTAGDGLGKRRHGVRAPIEA  106


>gi|116054932|emb|CAL57009.1|  Splicing factor U2AF, large subunit (RRM superfamily) (ISS) [Ostreococcus 
tauri]
Length=183

 Score = 33.1 bits (74),  Expect = 0.65
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 0/29 (0%)
 Frame = +2

Query  191  NVGHKLLSKMGWKEGEGLGGSRKGISDPI  277
            +   K++ KMGW +G GLG   +G++ P+
Sbjct  2    SAAEKMMEKMGWTKGRGLGKDEQGMTTPL  30


>gi|115462747|ref|NP_001054973.1|  Os05g0229000 [Oryza sativa (japonica cultivar-group)]
 gi|51038033|gb|AAT93837.1|  unknown protein [Oryza sativa (japonica cultivar-group)]
 gi|113578524|dbj|BAF16887.1|  Os05g0229000 [Oryza sativa (japonica cultivar-group)]
Length=70

 Score = 32.7 bits (73),  Expect = 0.84
 Identities = 14/24 (58%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
 Frame = +2

Query  176  KIQSDNVGHKLLSKMGWKEGEGLG  247
            ++ S N+G +LL KMGWK G+GLG
Sbjct  22   QLTSSNIGFRLLQKMGWK-GKGLG  44


>gi|2130063|pir||JC4599  13K prolamin precursor - rice
Length=156

 Score = 32.3 bits (72),  Expect = 1.1
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
 Frame = -2

Query  350  HPLQSHLQDDEHQPPNCSSLHHQP*SDLKYPFWSPLNPHLLSNPFLTKVYAQHYQI---E  180
            + LQSHL   +     CS    Q  S +  PFW P    L++N  + +   Q  ++   +
Sbjct  31   YQLQSHLLLQQQVLSPCSDFVRQQYSIVATPFWQPATFQLINNQVMQQQCCQQLRLVAQQ  90

Query  179  SLHSLQSPVQLFEQQHRCRQ  120
            S +   S VQ   QQ + +Q
Sbjct  91   SHYQAISIVQAIVQQLQLQQ  110