RID=1168930255-9973-190302519455.BLASTQ1, Contig134

Alignments
 

>gi|20466772|gb|AAM20703.1|  putative splicing factor [Arabidopsis thaliana]
Length=420

 Score =  168 bits (425),  Expect = 6e-42
 Identities = 82/121 (67%), Positives = 95/121 (78%), Gaps = 1/121 (0%)
 Frame = +1

Query  1    ISGLPGVGLQLPSNGIPTIDTIGTPSECLLLKNMFDPDLETEPDFDLDIKEDVQEECSKF  180
            ++GL G G+ +P       D IG PSECLLLKNMFDP  ETE DFD DIKEDV+EECSKF
Sbjct  299  VAGLAGSGI-IPGVIPAGFDPIGVPSECLLLKNMFDPSTETEDDFDEDIKEDVKEECSKF  357

Query  181  GKLKHIYVDRDSAGFVYLRVEDTQAAMSAQRNLHGRWFAAKMITATFMVPQTYEAKFPDS  360
            GKL HI+VD++S GFVYLR E+ QAA+ AQR LHGRWFA KMITAT+M  + YEAKFP+S
Sbjct  358  GKLNHIFVDKNSVGFVYLRFENAQAAIGAQRALHGRWFAGKMITATYMTTEAYEAKFPES  417

Query  361  K  363
            K
Sbjct  418  K  418


>gi|18398260|ref|NP_565399.1|  RNA binding / nucleic acid binding [Arabidopsis thaliana]
 gi|20197280|gb|AAC64224.2|  putative splicing factor [Arabidopsis thaliana]
Length=561

 Score =  168 bits (425),  Expect = 6e-42
 Identities = 82/121 (67%), Positives = 95/121 (78%), Gaps = 1/121 (0%)
 Frame = +1

Query  1    ISGLPGVGLQLPSNGIPTIDTIGTPSECLLLKNMFDPDLETEPDFDLDIKEDVQEECSKF  180
            ++GL G G+ +P       D IG PSECLLLKNMFDP  ETE DFD DIKEDV+EECSKF
Sbjct  440  VAGLAGSGI-IPGVIPAGFDPIGVPSECLLLKNMFDPSTETEDDFDEDIKEDVKEECSKF  498

Query  181  GKLKHIYVDRDSAGFVYLRVEDTQAAMSAQRNLHGRWFAAKMITATFMVPQTYEAKFPDS  360
            GKL HI+VD++S GFVYLR E+ QAA+ AQR LHGRWFA KMITAT+M  + YEAKFP+S
Sbjct  499  GKLNHIFVDKNSVGFVYLRFENAQAAIGAQRALHGRWFAGKMITATYMTTEAYEAKFPES  558

Query  361  K  363
            K
Sbjct  559  K  559


>gi|21553746|gb|AAM62839.1|  putative splicing factor [Arabidopsis thaliana]
Length=560

 Score =  164 bits (416),  Expect = 7e-41
 Identities = 77/102 (75%), Positives = 86/102 (84%), Gaps = 0/102 (0%)
 Frame = +1

Query  58   DTIGTPSECLLLKNMFDPDLETEPDFDLDIKEDVQEECSKFGKLKHIYVDRDSAGFVYLR  237
            D IG PSECLLLKNMFDP  ETE DFD DIKEDV+EECSKFGKL HI+VD++S GFVYLR
Sbjct  457  DPIGVPSECLLLKNMFDPSTETEDDFDEDIKEDVKEECSKFGKLNHIFVDKNSVGFVYLR  516

Query  238  VEDTQAAMSAQRNLHGRWFAAKMITATFMVPQTYEAKFPDSK  363
             E+ QAA+ AQR LHGRWFA KMITAT+M  + YEAKFP+SK
Sbjct  517  FENAQAAIGAQRALHGRWFAGKMITATYMTTEAYEAKFPESK  558


>gi|108706237|gb|ABF94032.1|  transposon protein, putative, CACTA, En/Spm sub-class, expressed 
[Oryza sativa (japonica cultivar-group)]
Length=566

 Score =  164 bits (414),  Expect = 1e-40
 Identities = 77/118 (65%), Positives = 93/118 (78%), Gaps = 4/118 (3%)
 Frame = +1

Query  1    ISGLPGVGLQLPSNGIPTIDTIGTPSECLLLKNMFDPDLETEPDFDLDIKEDVQEECSKF  180
            +  +PGV L + +  I T      PSECLLLKNMFDP +ET+PDFDLDIK+DVQEECSKF
Sbjct  452  LGSVPGVSLPITTQAIET----APPSECLLLKNMFDPSVETDPDFDLDIKDDVQEECSKF  507

Query  181  GKLKHIYVDRDSAGFVYLRVEDTQAAMSAQRNLHGRWFAAKMITATFMVPQTYEAKFP  354
            G++KHI+VD++++GFVYLR +   AAMSAQ+ LHGRWFA KMITATFM PQ Y  KFP
Sbjct  508  GQVKHIFVDKNTSGFVYLRFDSITAAMSAQKALHGRWFAGKMITATFMSPQQYSTKFP  565


>gi|92873122|gb|ABE81620.1|  RNA-binding region RNP-1 (RNA recognition motif) [Medicago truncatula]
Length=587

 Score =  160 bits (404),  Expect = 2e-39
 Identities = 76/116 (65%), Positives = 92/116 (79%), Gaps = 2/116 (1%)
 Frame = +1

Query  10   LPGVGLQLPSNGIPT--IDTIGTPSECLLLKNMFDPDLETEPDFDLDIKEDVQEECSKFG  183
            +P  GL LP+  +PT   + +GTPS CLLLKNMFDP  ETEPDFDLDIKEDV+EECSK+G
Sbjct  468  IPAPGLALPTQIMPTQVAEPVGTPSNCLLLKNMFDPTTETEPDFDLDIKEDVEEECSKYG  527

Query  184  KLKHIYVDRDSAGFVYLRVEDTQAAMSAQRNLHGRWFAAKMITATFMVPQTYEAKF  351
            ++KHIYVD++SAGFVYL  E  +AA +AQR +H RWFA KMI+A +M P  YEAKF
Sbjct  528  RVKHIYVDKNSAGFVYLMFETVEAASAAQRAMHMRWFARKMISAIYMQPHEYEAKF  583


>gi|10334491|emb|CAC10207.1|  putative splicing factor [Cicer arietinum]
Length=392

 Score =  157 bits (398),  Expect = 8e-39
 Identities = 77/119 (64%), Positives = 93/119 (78%), Gaps = 4/119 (3%)
 Frame = +1

Query  7    GLPGV--GLQLPSNGIPT--IDTIGTPSECLLLKNMFDPDLETEPDFDLDIKEDVQEECS  174
            G PGV     LP+  +PT  ++ +G PSECLLLKNMFDP  ETEPDFDLDIKEDV+EECS
Sbjct  270  GNPGVIPAQVLPAQVMPTPVVEPVGVPSECLLLKNMFDPSTETEPDFDLDIKEDVEEECS  329

Query  175  KFGKLKHIYVDRDSAGFVYLRVEDTQAAMSAQRNLHGRWFAAKMITATFMVPQTYEAKF  351
            K+G++KHIYVD+ SAGFVYLR E  +A+ +AQR +H RWFA ++ITA FM P  YEAKF
Sbjct  330  KYGRVKHIYVDKRSAGFVYLRFETVEASSAAQRAMHMRWFARRLITAIFMQPHLYEAKF  388


>gi|92895497|gb|ABE92730.1|  RNA-binding region RNP-1 (RNA recognition motif) [Medicago truncatula]
Length=567

 Score =  150 bits (380),  Expect = 1e-36
 Identities = 74/121 (61%), Positives = 91/121 (75%), Gaps = 4/121 (3%)
 Frame = +1

Query  7    GLPGV--GLQLPSNGIPT--IDTIGTPSECLLLKNMFDPDLETEPDFDLDIKEDVQEECS  174
            G PGV     LP+  +PT   + +G PSECLLLKNMFDP  E EPDFD+DIKEDV+EECS
Sbjct  445  GNPGVIPASVLPTQVMPTPVAEPVGIPSECLLLKNMFDPSTEIEPDFDIDIKEDVEEECS  504

Query  175  KFGKLKHIYVDRDSAGFVYLRVEDTQAAMSAQRNLHGRWFAAKMITATFMVPQTYEAKFP  354
            K+G++ HIYVD+ SAGFVYL+ E  +A+ +AQR +H RWFA ++ITA FM P  YEAKF 
Sbjct  505  KYGRVMHIYVDKRSAGFVYLQFETVEASSAAQRAMHMRWFARRLITAIFMQPHLYEAKFK  564

Query  355  D  357
            D
Sbjct  565  D  565


>gi|115482186|ref|NP_001064686.1|  Os10g0439600 [Oryza sativa (japonica cultivar-group)]
 gi|113639295|dbj|BAF26600.1|  Os10g0439600 [Oryza sativa (japonica cultivar-group)]
Length=330

 Score =  149 bits (377),  Expect = 2e-36
 Identities = 72/112 (64%), Positives = 90/112 (80%), Gaps = 3/112 (2%)
 Frame = +1

Query  22   GLQLPSNGIPTIDTIGTPSECLLLKNMFDPDLETEPDFDLDIKEDVQEECSKFGKLKHIY  201
            G+Q+P  G  + D IG+P+E LLLKNMFDP +ET+PDFDLDIK+DVQ+ECSKFG + HI+
Sbjct  222  GIQIP--GTQSAD-IGSPTEFLLLKNMFDPAVETDPDFDLDIKDDVQDECSKFGAVNHIF  278

Query  202  VDRDSAGFVYLRVEDTQAAMSAQRNLHGRWFAAKMITATFMVPQTYEAKFPD  357
            VD+++AGFVYL  +   AA +AQR LHGRWFA KMITATFM  Q Y+ KFP+
Sbjct  279  VDKNTAGFVYLHFDSVAAATAAQRALHGRWFAGKMITATFMTAQQYKMKFPN  330


>gi|78708721|gb|ABB47696.1|  splicing factor, CC1-like family protein, expressed [Oryza sativa 
(japonica cultivar-group)]
Length=320

 Score =  149 bits (377),  Expect = 2e-36
 Identities = 72/112 (64%), Positives = 90/112 (80%), Gaps = 3/112 (2%)
 Frame = +1

Query  22   GLQLPSNGIPTIDTIGTPSECLLLKNMFDPDLETEPDFDLDIKEDVQEECSKFGKLKHIY  201
            G+Q+P  G  + D IG+P+E LLLKNMFDP +ET+PDFDLDIK+DVQ+ECSKFG + HI+
Sbjct  212  GIQIP--GTQSAD-IGSPTEFLLLKNMFDPAVETDPDFDLDIKDDVQDECSKFGAVNHIF  268

Query  202  VDRDSAGFVYLRVEDTQAAMSAQRNLHGRWFAAKMITATFMVPQTYEAKFPD  357
            VD+++AGFVYL  +   AA +AQR LHGRWFA KMITATFM  Q Y+ KFP+
Sbjct  269  VDKNTAGFVYLHFDSVAAATAAQRALHGRWFAGKMITATFMTAQQYKMKFPN  320


>gi|78708720|gb|ABB47695.1|  splicing factor, CC1-like family protein, expressed [Oryza sativa 
(japonica cultivar-group)]
Length=339

 Score =  149 bits (377),  Expect = 2e-36
 Identities = 72/112 (64%), Positives = 90/112 (80%), Gaps = 3/112 (2%)
 Frame = +1

Query  22   GLQLPSNGIPTIDTIGTPSECLLLKNMFDPDLETEPDFDLDIKEDVQEECSKFGKLKHIY  201
            G+Q+P  G  + D IG+P+E LLLKNMFDP +ET+PDFDLDIK+DVQ+ECSKFG + HI+
Sbjct  231  GIQIP--GTQSAD-IGSPTEFLLLKNMFDPAVETDPDFDLDIKDDVQDECSKFGAVNHIF  287

Query  202  VDRDSAGFVYLRVEDTQAAMSAQRNLHGRWFAAKMITATFMVPQTYEAKFPD  357
            VD+++AGFVYL  +   AA +AQR LHGRWFA KMITATFM  Q Y+ KFP+
Sbjct  288  VDKNTAGFVYLHFDSVAAATAAQRALHGRWFAGKMITATFMTAQQYKMKFPN  339


>gi|62320860|dbj|BAD93824.1|  splicing factor-like protein [Arabidopsis thaliana]
Length=308

 Score =  146 bits (368),  Expect = 2e-35
 Identities = 69/119 (57%), Positives = 89/119 (74%), Gaps = 7/119 (5%)
 Frame = +1

Query  13   PGVGLQLPSNGIPTI-------DTIGTPSECLLLKNMFDPDLETEPDFDLDIKEDVQEEC  171
            PG+    P++ +PT        + +G PSECLLLKNMFDP  ETEP+FDL+I++DV +EC
Sbjct  187  PGMNPSFPTSVLPTTAIPSFVNEHVGLPSECLLLKNMFDPATETEPNFDLEIRDDVADEC  246

Query  172  SKFGKLKHIYVDRDSAGFVYLRVEDTQAAMSAQRNLHGRWFAAKMITATFMVPQTYEAK  348
            SK+G + HIYVD++SAGFVYLR +  +AA +AQR +H RWFA KMI+ATFM P  YEAK
Sbjct  247  SKYGPVNHIYVDKNSAGFVYLRFQSVEAAAAAQRAMHMRWFAQKMISATFMPPHEYEAK  305


>gi|18416114|ref|NP_568220.1|  RNA binding / nucleic acid binding [Arabidopsis thaliana]
 gi|15451046|gb|AAK96794.1|  splicing factor-like protein [Arabidopsis thaliana]
Length=527

 Score =  146 bits (368),  Expect = 2e-35
 Identities = 69/119 (57%), Positives = 89/119 (74%), Gaps = 7/119 (5%)
 Frame = +1

Query  13   PGVGLQLPSNGIPTI-------DTIGTPSECLLLKNMFDPDLETEPDFDLDIKEDVQEEC  171
            PG+    P++ +PT        + +G PSECLLLKNMFDP  ETEP+FDL+I++DV +EC
Sbjct  406  PGMNPSFPTSVLPTTAIPSFVNEHVGLPSECLLLKNMFDPATETEPNFDLEIRDDVADEC  465

Query  172  SKFGKLKHIYVDRDSAGFVYLRVEDTQAAMSAQRNLHGRWFAAKMITATFMVPQTYEAK  348
            SK+G + HIYVD++SAGFVYLR +  +AA +AQR +H RWFA KMI+ATFM P  YEAK
Sbjct  466  SKYGPVNHIYVDKNSAGFVYLRFQSVEAAAAAQRAMHMRWFAQKMISATFMPPHEYEAK  524


>gi|28059803|gb|AAO30095.1|  splicing factor-like protein [Arabidopsis thaliana]
Length=527

 Score =  146 bits (368),  Expect = 2e-35
 Identities = 69/119 (57%), Positives = 89/119 (74%), Gaps = 7/119 (5%)
 Frame = +1

Query  13   PGVGLQLPSNGIPTI-------DTIGTPSECLLLKNMFDPDLETEPDFDLDIKEDVQEEC  171
            PG+    P++ +PT        + +G PSECLLLKNMFDP  ETEP+FDL+I++DV +EC
Sbjct  406  PGMNPSFPTSVLPTTAIPSFVNEHVGLPSECLLLKNMFDPATETEPNFDLEIRDDVADEC  465

Query  172  SKFGKLKHIYVDRDSAGFVYLRVEDTQAAMSAQRNLHGRWFAAKMITATFMVPQTYEAK  348
            SK+G + HIYVD++SAGFVYLR +  +AA +AQR +H RWFA KMI+ATFM P  YEAK
Sbjct  466  SKYGPVNHIYVDKNSAGFVYLRFQSVEAAAAAQRAMHMRWFAQKMISATFMPPHEYEAK  524


>gi|9758966|dbj|BAB09409.1|  splicing factor-like protein [Arabidopsis thaliana]
Length=604

 Score =  139 bits (351),  Expect = 2e-33
 Identities = 66/114 (57%), Positives = 86/114 (75%), Gaps = 7/114 (6%)
 Frame = +1

Query  13   PGVGLQLPSNGIPTI-------DTIGTPSECLLLKNMFDPDLETEPDFDLDIKEDVQEEC  171
            PG+    P++ +PT        + +G PSECLLLKNMFDP  ETEP+FDL+I++DV +EC
Sbjct  406  PGMNPSFPTSVLPTTAIPSFVNEHVGLPSECLLLKNMFDPATETEPNFDLEIRDDVADEC  465

Query  172  SKFGKLKHIYVDRDSAGFVYLRVEDTQAAMSAQRNLHGRWFAAKMITATFMVPQ  333
            SK+G + HIYVD++SAGFVYLR +  +AA +AQR +H RWFA KMI+ATFMV Q
Sbjct  466  SKYGPVNHIYVDKNSAGFVYLRFQSVEAAAAAQRAMHMRWFAQKMISATFMVKQ  519


>gi|116059324|emb|CAL55031.1|  Polyadenylate-binding protein (RRM superfamily) (ISS) [Ostreococcus 
tauri]
Length=387

 Score =  102 bits (255),  Expect = 3e-22
 Identities = 48/97 (49%), Positives = 65/97 (67%), Gaps = 0/97 (0%)
 Frame = +1

Query  73   PSECLLLKNMFDPDLETEPDFDLDIKEDVQEECSKFGKLKHIYVDRDSAGFVYLRVEDTQ  252
            P+ CLLLKN+F+   ET+P++ LDI EDV+ EC KFG++ H +VD+DS GFVYL+  D  
Sbjct  291  PTPCLLLKNLFNAAEETDPEWWLDIAEDVKGECEKFGEITHTFVDKDSQGFVYLKFADVA  350

Query  253  AAMSAQRNLHGRWFAAKMITATFMVPQTYEAKFPDSK  363
            ++  AQ+ LH RWFA + I A +    TY   F  SK
Sbjct  351  SSTRAQQALHTRWFAGRKIAAEYQFAATYNGHFGLSK  387


>gi|115450793|ref|NP_001048997.1|  Os03g0153000 [Oryza sativa (japonica cultivar-group)]
 gi|113547468|dbj|BAF10911.1|  Os03g0153000 [Oryza sativa (japonica cultivar-group)]
Length=606

 Score = 95.9 bits (237),  Expect = 4e-20
 Identities = 44/70 (62%), Positives = 55/70 (78%), Gaps = 4/70 (5%)
 Frame = +1

Query  1    ISGLPGVGLQLPSNGIPTIDTIGTPSECLLLKNMFDPDLETEPDFDLDIKEDVQEECSKF  180
            +  +PGV L + +  I T      PSECLLLKNMFDP +ET+PDFDLDIK+DVQEECSKF
Sbjct  347  LGSVPGVSLPITTQAIET----APPSECLLLKNMFDPSVETDPDFDLDIKDDVQEECSKF  402

Query  181  GKLKHIYVDR  210
            G++KHI+VD+
Sbjct  403  GQVKHIFVDK  412


 Score = 31.6 bits (70),  Expect = 0.86
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 0/28 (0%)
 Frame = +3

Query  240  RRYTGCDECSTEPTWKMVCC*NDYCYIH  323
            +RY  C EC+   +W++VC  +DY  I+
Sbjct  550  KRYNSCHECTESTSWEVVCGKDDYGNIY  577


>gi|92875570|gb|ABE83506.1|  RNA-binding region RNP-1 (RNA recognition motif) [Medicago truncatula]
Length=522

 Score = 53.9 bits (128),  Expect = 2e-07
 Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 12/117 (10%)
 Frame = +1

Query  19   VGLQLPSNGIPTIDTIGTPSECLLLKNMFDPDLETEPDFDLDIKEDVQEECSKFGKLKHI  198
            VGL +P  G+PT D   +P++ L L      +  T+     +I ED+++EC KFG L ++
Sbjct  405  VGLNIP--GVPTNDE--SPTKVLCLTEAVTTEQLTDNGEYEEILEDMRDECRKFGTLVNV  460

Query  199  YVDRDSA--------GFVYLRVEDTQAAMSAQRNLHGRWFAAKMITATFMVPQTYEA  345
             + R +         G V+L   D  A ++A+  L+GR F   ++TA +   + Y +
Sbjct  461  VIPRPNPNGELSTGIGKVFLEYSDCTACLAAKNALNGRKFGGSIVTAFYYPEEKYHS  517


>gi|116056401|emb|CAL52690.1|  RNA-binding protein ELAV/HU (RRM superfamily) (ISS) [Ostreococcus 
tauri]
Length=388

 Score = 50.8 bits (120),  Expect = 1e-06
 Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 11/120 (9%)
 Frame = +1

Query  19   VGLQLPSNGIPTIDTIGTPSECLLLKNM--FDPDLETEPDFDLDIKEDVQEECSKFGKLK  192
            +G Q+     P I     PSE +   NM   + +L  + +F+ +I ED+ EEC K+GK+ 
Sbjct  268  IGGQVSVPPPPAIAPANPPSEVVSFTNMGITEEELADDEEFE-NIMEDMNEECGKYGKII  326

Query  193  HIYVDRDS--------AGFVYLRVEDTQAAMSAQRNLHGRWFAAKMITATFMVPQTYEAK  348
             + + R S         G V++R E  + A  A+  L+GR F    + A F+  +++ ++
Sbjct  327  SVVIPRPSKSGESVTGIGKVFVRYESVEDATKARDALNGRRFGGNSVVADFIDIESFASQ  386


>gi|30685703|ref|NP_850210.1|  RNA binding / nucleic acid binding [Arabidopsis thaliana]
Length=247

 Score = 48.5 bits (114),  Expect = 7e-06
 Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 11/118 (9%)
 Frame = +1

Query  34   PSNGIPTI--DTIGTPSECLLLKNMFDP-DLETEPDFDL-DIKEDVQEECSKFGKLKHIY  201
            P  GIP+     +G P   L LKN+ DP DL +  + ++ +I EDV+ EC+++     I 
Sbjct  128  PFYGIPSHAKPLLGKPKNILKLKNVVDPEDLTSFSEQEVKEILEDVRLECARWDAGDKIE  187

Query  202  VDRDS-------AGFVYLRVEDTQAAMSAQRNLHGRWFAAKMITATFMVPQTYEAKFP  354
             +++         G +++     +A   A  +LHGR +  +++ A ++  + Y+ +FP
Sbjct  188  EEQEEDPEDVFETGCIFIEYRRPEATCDAAHSLHGRLYDNRIVKAEYVSKELYQIRFP  245


>gi|2459426|gb|AAB80661.1|  putative splicing factor U2AF large chain [Arabidopsis thaliana]
Length=475

 Score = 48.5 bits (114),  Expect = 7e-06
 Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 11/118 (9%)
 Frame = +1

Query  34   PSNGIPTI--DTIGTPSECLLLKNMFDP-DLETEPDFDL-DIKEDVQEECSKFGKLKHIY  201
            P  GIP+     +G P   L LKN+ DP DL +  + ++ +I EDV+ EC+++     I 
Sbjct  356  PFYGIPSHAKPLLGKPKNILKLKNVVDPEDLTSFSEQEVKEILEDVRLECARWDAGDKIE  415

Query  202  VDRDS-------AGFVYLRVEDTQAAMSAQRNLHGRWFAAKMITATFMVPQTYEAKFP  354
             +++         G +++     +A   A  +LHGR +  +++ A ++  + Y+ +FP
Sbjct  416  EEQEEDPEDVFETGCIFIEYRRPEATCDAAHSLHGRLYDNRIVKAEYVSKELYQIRFP  473


>gi|115437160|ref|NP_001043226.1|  Os01g0526100 [Oryza sativa (japonica cultivar-group)]
 gi|113532757|dbj|BAF05140.1|  Os01g0526100 [Oryza sativa (japonica cultivar-group)]
Length=373

 Score = 48.1 bits (113),  Expect = 9e-06
 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 13/93 (13%)
 Frame = +1

Query  67   GTPSECLLLKNMFDPDLETEPDFDLDIKEDVQEECSKFGKLKHIYV--------DRDSAG  222
            G P+  LLL+NM  P      + D +++E+V  ECSK+G +  + +          + A 
Sbjct  259  GPPTRVLLLRNMVGPG-----EVDDELEEEVASECSKYGTVLRVLIFEITQADFPAEEAV  313

Query  223  FVYLRVEDTQAAMSAQRNLHGRWFAAKMITATF  321
             +++  E  + A  A  +L GR+F  +++ ATF
Sbjct  314  RIFILFERAEEATKAMIDLEGRFFGGRVVRATF  346


>gi|20521490|dbj|BAB91997.1|  putative DNA-damage repair protein DRT111 precursor [Oryza sativa 
(japonica cultivar-group)]
 gi|21328134|dbj|BAC00713.1|  putative DNA-damage repair protein DRT111 precursor [Oryza sativa 
(japonica cultivar-group)]
Length=368

 Score = 48.1 bits (113),  Expect = 9e-06
 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 13/93 (13%)
 Frame = +1

Query  67   GTPSECLLLKNMFDPDLETEPDFDLDIKEDVQEECSKFGKLKHIYV--------DRDSAG  222
            G P+  LLL+NM  P      + D +++E+V  ECSK+G +  + +          + A 
Sbjct  259  GPPTRVLLLRNMVGPG-----EVDDELEEEVASECSKYGTVLRVLIFEITQADFPAEEAV  313

Query  223  FVYLRVEDTQAAMSAQRNLHGRWFAAKMITATF  321
             +++  E  + A  A  +L GR+F  +++ ATF
Sbjct  314  RIFILFERAEEATKAMIDLEGRFFGGRVVRATF  346


>gi|116054932|emb|CAL57009.1|  Splicing factor U2AF, large subunit (RRM superfamily) (ISS) [Ostreococcus 
tauri]
Length=183

 Score = 47.8 bits (112),  Expect = 1e-05
 Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 14/118 (11%)
 Frame = +1

Query  16   GVGLQLPSNGIPTIDTIGTPSECLLLKNMFDPDLETEPDFDLDIKEDVQEECSKFGKLKH  195
            G+GL   S G  ++D   TP+  LLL+N+      TE   D      V +EC K+G +  
Sbjct  62   GLGLGETSEG-KSVDPSPTPTRVLLLRNIVLAGGVTEATED-----QVADECEKYGDVVR  115

Query  196  IYVDR--------DSAGFVYLRVEDTQAAMSAQRNLHGRWFAAKMITATFMVPQTYEA  345
            + +          D A  ++    D +AA  A  NLHG  FA +++ A++   + +EA
Sbjct  116  VLIFEITEDGFAIDEAVRIFTEFVDEEAATRALENLHGNVFANRVVKASYFDVKKFEA  173


>gi|116060491|emb|CAL55827.1|  Splicing factor U2AF, large subunit (RRM superfamily) (ISS) [Ostreococcus 
tauri]
Length=311

 Score = 47.4 bits (111),  Expect = 2e-05
 Identities = 26/100 (26%), Positives = 54/100 (54%), Gaps = 8/100 (8%)
 Frame = +1

Query  76   SECLLLKNMFDPDLETEPDFDLDIKEDVQEECSKFGKLKHIYVD--------RDSAGFVY  231
            +E L L+NM D  +        D++ DV++ECSK G++  ++V         +++   V+
Sbjct  207  TEYLCLENMVDIAVLRSGRERKDLQYDVEDECSKCGRVVRVFVQSPRDEDIKQNTVSRVF  266

Query  232  LRVEDTQAAMSAQRNLHGRWFAAKMITATFMVPQTYEAKF  351
            ++ E T ++ SA + + GR F  + +TA +M    ++ ++
Sbjct  267  VQFERTSSSESAYKMMQGRTFGGRTVTARYMNATEFDREY  306


>gi|3850821|emb|CAA77135.1|  U2 snRNP auxiliary factor, large subunit [Nicotiana plumbaginifolia]
Length=573

 Score = 46.2 bits (108),  Expect = 3e-05
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
 Frame = +1

Query  112  DLETEPDFDLDIKEDVQEECSKFGKLKHIYVDRDS--------AGFVYLRVEDTQAAMSA  267
            +L  + D+  DI ED++ EC KFG L ++ + R S         G V+L   D  ++  A
Sbjct  484  ELNDDEDYQ-DILEDMRTECGKFGSLVNVVIPRPSPNGEPTPGVGKVFLEYADVDSSSKA  542

Query  268  QRNLHGRWFAAKMITATF  321
            +++L+GR F    + A F
Sbjct  543  RQSLNGRKFGGNQVVAVF  560


>gi|92883121|gb|ABE86783.1|  U2 snRNP auxilliary factor, large subunit, splicing factor [Medicago 
truncatula]
Length=446

 Score = 45.4 bits (106),  Expect = 6e-05
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)
 Frame = +1

Query  76   SECLLLKNMFDPD-LETEPDFDLDIKEDVQEECSKFGKLKHIYVDR--------DSAGFV  228
            ++ + L N   P+ L+ + DF+ +I +D+++ECSKFG L ++ + R           G V
Sbjct  344  TKVVCLTNAVAPEELKEDEDFE-EIIDDMRQECSKFGSLVNVVIPRPQPDGDLSGGVGKV  402

Query  229  YLRVEDTQAAMSAQRNLHGRWFAAKMITATF  321
            +L   D + A  A+  L+GR F    + A F
Sbjct  403  FLEYVDIEGATKARTGLNGRKFGGNEVIAVF  433


>gi|15237311|ref|NP_197130.1|  RNA binding / nucleic acid binding [Arabidopsis thaliana]
 gi|9755836|emb|CAC01867.1|  putative protein [Arabidopsis thaliana]
 gi|63003814|gb|AAY25436.1|  At5g16260 [Arabidopsis thaliana]
 gi|110738266|dbj|BAF01062.1|  hypothetical protein [Arabidopsis thaliana]
Length=519

 Score = 44.3 bits (103),  Expect = 1e-04
 Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
 Frame = +1

Query  85   LLLKNMFDP-DLETEPDFDLDIKEDVQEECSKFGKLKHIYV-DRDSAGFVYLRVEDTQAA  258
            ++L+ MF P +L  + D   +++EDV+EE  K G    + V +    G V +R +D + A
Sbjct  408  VVLRYMFSPAELMADEDLVAELEEDVKEESLKHGPFDSVKVCEHHPQGVVLVRFKDRRDA  467

Query  259  MSAQRNLHGRWFAAKMITAT  318
                  ++GRW+A + I A+
Sbjct  468  QKCIEAMNGRWYAKRQIHAS  487


>gi|116310691|emb|CAH67490.1|  H0306B06.5 [Oryza sativa (indica cultivar-group)]
 gi|116310709|emb|CAH67506.1|  OSIGBa0092E01.1 [Oryza sativa (indica cultivar-group)]
Length=476

 Score = 43.9 bits (102),  Expect = 2e-04
 Identities = 22/85 (25%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
 Frame = +1

Query  70   TPSECLLLKNMFDP-DLETEPDFDLDIKEDVQEECSKFGKLKHIYV-DRDSAGFVYLRVE  243
            T +  ++L++MF P +L  +     +++ DV+EEC K G + ++ V +    G + ++ +
Sbjct  360  TITTTVILRHMFTPAELRADETLLPELEADVREECMKLGPVDNVKVCENHPEGVILVKFK  419

Query  244  DTQAAMSAQRNLHGRWFAAKMITAT  318
            D +  +     ++GRWF    I A+
Sbjct  420  DRKDGIKCIEKMNGRWFGGNQIQAS  444


>gi|115459200|ref|NP_001053200.1|  Os04g0496400 [Oryza sativa (japonica cultivar-group)]
 gi|38345380|emb|CAE03112.2|  OSJNBa0067K08.9 [Oryza sativa (japonica cultivar-group)]
 gi|113564771|dbj|BAF15114.1|  Os04g0496400 [Oryza sativa (japonica cultivar-group)]
Length=476

 Score = 43.9 bits (102),  Expect = 2e-04
 Identities = 22/85 (25%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
 Frame = +1

Query  70   TPSECLLLKNMFDP-DLETEPDFDLDIKEDVQEECSKFGKLKHIYV-DRDSAGFVYLRVE  243
            T +  ++L++MF P +L  +     +++ DV+EEC K G + ++ V +    G + ++ +
Sbjct  360  TITTTVILRHMFTPAELRADETLLPELEADVREECMKLGPVDNVKVCENHPEGVILVKFK  419

Query  244  DTQAAMSAQRNLHGRWFAAKMITAT  318
            D +  +     ++GRWF    I A+
Sbjct  420  DRKDGIKCIEKMNGRWFGGNQIQAS  444


>gi|3850823|emb|CAA77136.1|  U2 snRNP auxiliary factor, large subunit [Nicotiana plumbaginifolia]
Length=555

 Score = 43.5 bits (101),  Expect = 2e-04
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
 Frame = +1

Query  112  DLETEPDFDLDIKEDVQEECSKFGKLKHIYVDRDS--------AGFVYLRVEDTQAAMSA  267
            +L  + D+  DI ED++ EC KFG L ++ + R +         G V+L   D   +  A
Sbjct  466  ELNDDDDYQ-DILEDMRTECEKFGALVNVVIPRPNPNGVPTPGLGKVFLEYADVDGSSKA  524

Query  268  QRNLHGRWFAAKMITATF  321
            ++ L+GR F    + A F
Sbjct  525  RQGLNGRKFGGNQVVAVF  542


>gi|9858779|gb|AAG01126.1|AF273333_11  BAC19.11 [Lycopersicon esculentum]
Length=532

 Score = 43.1 bits (100),  Expect = 3e-04
 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
 Frame = +1

Query  112  DLETEPDFDLDIKEDVQEECSKFGKLKHIYVDRDS--------AGFVYLRVEDTQAAMSA  267
            +L+ + D+  DI ED++ EC KFG L ++ + R +         G V+L   D  ++  A
Sbjct  443  ELKDDDDYQ-DILEDMRIECGKFGALLNVVIPRPNPNGEPTPGLGKVFLEYADVDSSSKA  501

Query  268  QRNLHGRWFAAKMITATF  321
            ++ L+GR F    + A F
Sbjct  502  RQGLNGRKFGGNQVIAVF  519


>gi|15218489|ref|NP_172503.1|  RNA binding / nucleic acid binding [Arabidopsis thaliana]
Length=757

 Score = 42.4 bits (98),  Expect = 5e-04
 Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 17/97 (17%)
 Frame = +1

Query  85   LLLKNMFD-PDLETEPDFDLDIK------------EDVQEECSKFGKLKHIYVDRDSA--  219
            LL+KNM++ P +  E D  L+              EDV  E  K+G+L +  V R+ +  
Sbjct  274  LLMKNMYNGPGITWEQDEGLEYTDEEAELCYEEFYEDVHTEFLKYGELVNFKVCRNGSFH  333

Query  220  --GFVYLRVEDTQAAMSAQRNLHGRWFAAKMITATFM  324
              G VY+     ++A+ A ++++GR+FA K +   F+
Sbjct  334  LKGNVYVHYRSLESAILAYQSINGRYFAGKQVNCEFV  370


>gi|22655131|gb|AAM98156.1|  putative U2 snRNP auxiliary factor [Arabidopsis thaliana]
Length=589

 Score = 42.0 bits (97),  Expect = 6e-04
 Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
 Frame = +1

Query  67   GTPSECLLLKNMFDPDLETEPDFDLDIKEDVQEECSKFGKLKHIYVDRDS--------AG  222
            GTP++ + L  +   D   + +   +I ED+++E  KFG L ++ + R +         G
Sbjct  484  GTPTKIVCLTQVVTADDLRDDEEYAEIMEDMRQEGGKFGNLVNVVIPRPNPDHDPTPGVG  543

Query  223  FVYLRVEDTQAAMSAQRNLHGRWFAAKMITATFMVPQTY  339
             V+L   D   +  A+  ++GR F    + A +     Y
Sbjct  544  KVFLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPEDKY  582


>gi|12323333|gb|AAG51641.1|AC018908_7  putative U2 snRNP auxiliary factor; 19096-22891 [Arabidopsis 
thaliana]
Length=568

 Score = 42.0 bits (97),  Expect = 6e-04
 Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
 Frame = +1

Query  67   GTPSECLLLKNMFDPDLETEPDFDLDIKEDVQEECSKFGKLKHIYVDRDS--------AG  222
            GTP++ + L  +   D   + +   +I ED+++E  KFG L ++ + R +         G
Sbjct  463  GTPTKIVCLTQVVTADDLRDDEEYAEIMEDMRQEGGKFGNLVNVVIPRPNPDHDPTPGVG  522

Query  223  FVYLRVEDTQAAMSAQRNLHGRWFAAKMITATFMVPQTY  339
             V+L   D   +  A+  ++GR F    + A +     Y
Sbjct  523  KVFLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPEDKY  561


>gi|30696485|ref|NP_176287.3|  RNA binding / nucleic acid binding [Arabidopsis thaliana]
Length=589

 Score = 42.0 bits (97),  Expect = 6e-04
 Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
 Frame = +1

Query  67   GTPSECLLLKNMFDPDLETEPDFDLDIKEDVQEECSKFGKLKHIYVDRDS--------AG  222
            GTP++ + L  +   D   + +   +I ED+++E  KFG L ++ + R +         G
Sbjct  484  GTPTKIVCLTQVVTADDLRDDEEYAEIMEDMRQEGGKFGNLVNVVIPRPNPDHDPTPGVG  543

Query  223  FVYLRVEDTQAAMSAQRNLHGRWFAAKMITATFMVPQTY  339
             V+L   D   +  A+  ++GR F    + A +     Y
Sbjct  544  KVFLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPEDKY  582


>gi|18406905|ref|NP_564764.1|  RNA binding / nucleic acid binding [Arabidopsis thaliana]
 gi|12323801|gb|AAG51869.1|AC079675_4  U2 snRNP auxiliary factor, large subunit, putative; 15147-15692 
[Arabidopsis thaliana]
Length=111

 Score = 41.6 bits (96),  Expect = 8e-04
 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
 Frame = +1

Query  67   GTPSECLLLKNMFDPDLETEPDFDLDIKEDVQEECSKFGKLKHIYVDRDS--------AG  222
            GTP++ + L  +   D   +     DI ED+ +E  KFG L ++ + R +         G
Sbjct  6    GTPTKIVCLTQVVTADDLRDDAEYADIMEDMSQEGGKFGNLVNVVIPRPNPDHDPTPGVG  65

Query  223  FVYLRVEDTQAAMSAQRNLHGRWFAAKMITATFMVPQTY  339
             V+L   D   +  A+  ++GR F    + A +     Y
Sbjct  66   KVFLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPEDKY  104


>gi|92893904|gb|ABE91954.1|  RNA-binding region RNP-1 (RNA recognition motif); Concanavalin 
A-like lectin/glucanase; U2 auxiliary factor small subunit 
[Medicago truncatula]
Length=822

 Score = 40.8 bits (94),  Expect = 0.001
 Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 17/97 (17%)
 Frame = +1

Query  85   LLLKNMFD-PDLETEPDFDLDIK------------EDVQEECSKFGKLKHIYVDRDSA--  219
            LL+KNM++ P L  E D  L+              EDV  E  KFG++ +  V ++ +  
Sbjct  221  LLIKNMYNGPGLAWEQDEGLEYTDEEVERCFEEFYEDVHTEFLKFGEIVNFKVCKNGSFH  280

Query  220  --GFVYLRVEDTQAAMSAQRNLHGRWFAAKMITATFM  324
              G VY++ +   +A+ A  +++GR+FA K ++  F+
Sbjct  281  LRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCKFV  317


>gi|99014572|emb|CAK22276.1|  putative U2 snRNP auxiliary factor [Chenopodium rubrum]
Length=151

 Score = 40.0 bits (92),  Expect = 0.002
 Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
 Frame = +1

Query  142  DIKEDVQEECSKFGKLKHIYVDRDSA----GFVYLRVEDTQAAMSAQRNLHGRWFAAKMI  309
            D  ED+ EE +K+G+++ + +  + A    G VY++  + + A +A RNL GR++A + I
Sbjct  25   DFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQYREEEEAANAHRNLSGRFYAGRPI  84

Query  310  TATF  321
               F
Sbjct  85   IVDF  88


>gi|3850818|emb|CAA77133.1|  U2 snRNP auxiliary factor, small subunit [Oryza sativa]
Length=290

 Score = 40.0 bits (92),  Expect = 0.002
 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 15/95 (15%)
 Frame = +1

Query  49   PTIDTIGTPSECLLLKNMFDPDLETEPDFDLDIKEDVQEECSKFGKLKHIYVDRDSA---  219
            P ID  G P          DP+ + + DF+ D  ED+ EE SK+G+++ ++V  + A   
Sbjct  60   PGIDAQGNP---------IDPE-KIQADFE-DFYEDIFEELSKYGEIESLHVCDNFADHM  108

Query  220  -GFVYLRVEDTQAAMSAQRNLHGRWFAAKMITATF  321
             G VY++  +   A  A + L GR+++ + I   F
Sbjct  109  IGNVYVQFREEDQAARALQALTGRYYSGRPIIVEF  143


>gi|3850819|emb|CAA77134.1|  U2 snRNP auxiliary factor, small subunit [Oryza sativa]
Length=274

 Score = 40.0 bits (92),  Expect = 0.002
 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 15/95 (15%)
 Frame = +1

Query  49   PTIDTIGTPSECLLLKNMFDPDLETEPDFDLDIKEDVQEECSKFGKLKHIYVDRDSA---  219
            P ID  G P          DP+ + + DF+ D  ED+ EE SK+G+++ ++V  + A   
Sbjct  60   PGIDAQGNP---------IDPE-KIQADFE-DFYEDIFEELSKYGEIESLHVCDNFADHM  108

Query  220  -GFVYLRVEDTQAAMSAQRNLHGRWFAAKMITATF  321
             G VY++  +   A  A + L GR+++ + I   F
Sbjct  109  IGNVYVQFREEDQAARALQALTGRYYSGRPIIVEF  143


>gi|15234495|ref|NP_195387.1|  ATU2AF65A; RNA binding / nucleic acid binding [Arabidopsis thaliana]
 gi|18087531|gb|AAL58899.1|AF462805_1  At4g35590/C7A10_670 [Arabidopsis thaliana]
 gi|4006898|emb|CAB16828.1|  splicing factor-like protein [Arabidopsis thaliana]
 gi|7270617|emb|CAB80335.1|  splicing factor-like protein [Arabidopsis thaliana]
 gi|23506119|gb|AAN28919.1|  At4g35590/C7A10_670 [Arabidopsis thaliana]
 gi|24030414|gb|AAN41365.1|  putative splicing factor [Arabidopsis thaliana]
Length=573

 Score = 40.0 bits (92),  Expect = 0.002
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
 Frame = +1

Query  142  DIKEDVQEECSKFGKLKHIYVDRDS--------AGFVYLRVEDTQAAMSAQRNLHGRWFA  297
            DI ED+++E  KFG L ++ + R S         G V+L+  DT  +  A+  ++GR F 
Sbjct  493  DIMEDMRQEGGKFGALTNVVIPRPSPNGEPVAGLGKVFLKYADTDGSTRARFGMNGRKFG  552

Query  298  AKMITATFMVPQTYE  342
               + A +     +E
Sbjct  553  GNEVVAVYYPEDKFE  567


>gi|68036691|gb|AAY84879.1|  U2AF small subunit [Triticum aestivum]
Length=314

 Score = 40.0 bits (92),  Expect = 0.002
 Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 15/102 (14%)
 Frame = +1

Query  28   QLPSNGIPTIDTIGTPSECLLLKNMFDPDLETEPDFDLDIKEDVQEECSKFGKLKHIYVD  207
            Q P    P +D  G P          DP ++ + DF+ D  ED+ +E SK G++++++V 
Sbjct  53   QRPDMITPGVDAQGNP---------IDP-VKIQGDFE-DFYEDIFDELSKHGEVENLHVC  101

Query  208  RDSA----GFVYLRVEDTQAAMSAQRNLHGRWFAAKMITATF  321
             + A    G VY++  +   A  A + L GR+++ + I A F
Sbjct  102  DNLADHLIGNVYVQFREEDQAAKALQALQGRFYSGRPIIAEF  143


>gi|115439063|ref|NP_001043811.1|  Os01g0667800 [Oryza sativa (japonica cultivar-group)]
 gi|56202175|dbj|BAD73653.1|  U2 auxiliary factor small chain-like [Oryza sativa (japonica 
cultivar-group)]
 gi|113533342|dbj|BAF05725.1|  Os01g0667800 [Oryza sativa (japonica cultivar-group)]
Length=258

 Score = 39.7 bits (91),  Expect = 0.003
 Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
 Frame = +1

Query  28   QLPSNGIPTIDTIGTPSECLLLKNMFDPDLETEPDFDLDIKEDVQEECSKFGKLKHIYVD  207
            Q P    P +D  G P +   ++  F+           D  ED+ EE SKFG+++++ V 
Sbjct  48   QRPDMITPGVDAQGQPIDPRQMQEHFE-----------DFYEDIFEELSKFGEIENLNVC  96

Query  208  RDSA----GFVYLRVEDTQAAMSAQRNLHGRWFAAKMITATF  321
             + A    G VY++  +   A +A   L GR+++ + I   F
Sbjct  97   DNLADHMIGNVYVQFREEDQAAAAHTALQGRFYSGRPIIVDF  138


>gi|115465463|ref|NP_001056331.1|  Os05g0564200 [Oryza sativa (japonica cultivar-group)]
 gi|50511477|gb|AAT77399.1|  'U2 snRNP auxiliary factor, small subunit' [Oryza sativa (japonica 
cultivar-group)]
 gi|113579882|dbj|BAF18245.1|  Os05g0564200 [Oryza sativa (japonica cultivar-group)]
Length=304

 Score = 39.3 bits (90),  Expect = 0.004
 Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 15/102 (14%)
 Frame = +1

Query  28   QLPSNGIPTIDTIGTPSECLLLKNMFDPDLETEPDFDLDIKEDVQEECSKFGKLKHIYVD  207
            Q P    P +D  G P +   ++  F+           D  ED+ EE SKFG+++ + V 
Sbjct  53   QRPDMITPGVDAQGQPIDPEKMQEHFE-----------DFYEDIYEELSKFGEVETLNVC  101

Query  208  RDSA----GFVYLRVEDTQAAMSAQRNLHGRWFAAKMITATF  321
             + A    G VY++  + + A++A   L GR+++ + I   +
Sbjct  102  DNLADHMIGNVYVQFREEEQAVAAHNALQGRFYSGRPIIVEY  143


>gi|3850816|emb|CAA77132.1|  U2 snRNP auxiliary factor, small subunit [Oryza sativa]
Length=301

 Score = 39.3 bits (90),  Expect = 0.004
 Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 15/102 (14%)
 Frame = +1

Query  28   QLPSNGIPTIDTIGTPSECLLLKNMFDPDLETEPDFDLDIKEDVQEECSKFGKLKHIYVD  207
            Q P    P +D  G P +   ++  F+           D  ED+ EE SKFG+++ + V 
Sbjct  53   QRPDMITPGVDAQGQPIDPEKMQEHFE-----------DFYEDIYEELSKFGEVETLNVC  101

Query  208  RDSA----GFVYLRVEDTQAAMSAQRNLHGRWFAAKMITATF  321
             + A    G VY++  + + A++A   L GR+++ + I   +
Sbjct  102  DNLADHMIGNVYVQFREEEQAVAAHNALQGRFYSGRPIIVEY  143


>gi|166694|gb|AAA73382.1|  [Arabidopsis thaliana recombination and DNA-damage resistance 
protein (DRT111) mRNA, complete cds.], gene product
Length=383

 Score = 39.3 bits (90),  Expect = 0.004
 Identities = 23/100 (23%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
 Frame = +1

Query  46   IPTIDTIGTPSECLLLKNMFDPDLETEPDFDLDIKEDVQEECSKFGKLKHIYVDR-----  210
            + +++  G P+  LLL+NM  P        D +++++V  EC+K+G +  + +       
Sbjct  268  VKSVNINGEPTRVLLLRNMVGPG-----QVDDELEDEVGGECAKYGTVTRVLIFEITEPN  322

Query  211  ---DSAGFVYLRVEDTQAAMSAQRNLHGRWFAAKMITATF  321
                 A  ++++    +    A  +L GR+F  + + ATF
Sbjct  323  FPVHEAVRIFVQFSRPEETTKALVDLDGRYFGGRTVRATF  362


>gi|115486631|ref|NP_001068459.1|  Os11g0682300 [Oryza sativa (japonica cultivar-group)]
 gi|113645681|dbj|BAF28822.1|  Os11g0682300 [Oryza sativa (japonica cultivar-group)]
Length=378

 Score = 38.9 bits (89),  Expect = 0.005
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
 Frame = +1

Query  73   PSECLLLKNMFDPD-LETEPDFDLDIKEDVQEECSKFGKLKHIYVDRD--------SAGF  225
            P++ + L  +   D L+ + +++ DI ED++ E  K+G L  + + R           G 
Sbjct  275  PTKVVCLTQVVSADELKDDEEYE-DIMEDMRLEAGKYGNLIKVVIPRPDPSGLPVAGVGK  333

Query  226  VYLRVEDTQAAMSAQRNLHGRWFAAKMITATF  321
            V+L   D   A  A+  +HGR F    + A F
Sbjct  334  VFLEYADVDGATKAKTAMHGRKFGGNPVVAVF  365


>gi|108864648|gb|ABG22574.1|  transposon protein, putative, CACTA, En/Spm sub-class, expressed 
[Oryza sativa (japonica cultivar-group)]
Length=366

 Score = 38.9 bits (89),  Expect = 0.005
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
 Frame = +1

Query  73   PSECLLLKNMFDPD-LETEPDFDLDIKEDVQEECSKFGKLKHIYVDRD--------SAGF  225
            P++ + L  +   D L+ + +++ DI ED++ E  K+G L  + + R           G 
Sbjct  263  PTKVVCLTQVVSADELKDDEEYE-DIMEDMRLEAGKYGNLIKVVIPRPDPSGLPVAGVGK  321

Query  226  VYLRVEDTQAAMSAQRNLHGRWFAAKMITATF  321
            V+L   D   A  A+  +HGR F    + A F
Sbjct  322  VFLEYADVDGATKAKTAMHGRKFGGNPVVAVF  353


>gi|108864649|gb|ABA95281.2|  transposon protein, putative, CACTA, En/Spm sub-class, expressed 
[Oryza sativa (japonica cultivar-group)]
Length=548

 Score = 38.9 bits (89),  Expect = 0.005
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
 Frame = +1

Query  73   PSECLLLKNMFDPD-LETEPDFDLDIKEDVQEECSKFGKLKHIYVDRD--------SAGF  225
            P++ + L  +   D L+ + +++ DI ED++ E  K+G L  + + R           G 
Sbjct  445  PTKVVCLTQVVSADELKDDEEYE-DIMEDMRLEAGKYGNLIKVVIPRPDPSGLPVAGVGK  503

Query  226  VYLRVEDTQAAMSAQRNLHGRWFAAKMITATF  321
            V+L   D   A  A+  +HGR F    + A F
Sbjct  504  VFLEYADVDGATKAKTAMHGRKFGGNPVVAVF  535


>gi|15220757|ref|NP_174336.1|  DRT111; nucleic acid binding [Arabidopsis thaliana]
 gi|20141383|sp|P42698|DR111_ARATH  DNA-damage-repair/toleration protein DRT111, chloroplast precursor
 gi|6634771|gb|AAF19751.1|AC009917_10  Strong similarity to gi|1169200 DNA-Damage-Repair/Toleration 
protein (DRT111) precurser, and contains a G-patch PF|01585 
domain and RNA recognition PF|00076 motif.  EST gb|AA395591 
comes from this gene. [Arabidopsis thaliana]
 gi|15028005|gb|AAK76533.1|  putative DNA damage repair protein [Arabidopsis thaliana]
 gi|20259641|gb|AAM14338.1|  putative DNA damage repair protein [Arabidopsis thaliana]
Length=387

 Score = 38.9 bits (89),  Expect = 0.005
 Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 13/100 (13%)
 Frame = +1

Query  46   IPTIDTIGTPSECLLLKNMFDPDLETEPDFDLDIKEDVQEECSKFGKLKHIYVDR-----  210
            + +++  G P+  LLL+NM  P        D +++++V  EC K+G +  + +       
Sbjct  272  VKSVNINGEPTRVLLLRNMVGPG-----QVDDELEDEVGGECGKYGTVTRVLIFEITEPN  326

Query  211  ---DSAGFVYLRVEDTQAAMSAQRNLHGRWFAAKMITATF  321
                 A  ++++    +    A  +L GR+F  + + ATF
Sbjct  327  FPVHEAVRIFVQFSRPEETTKALVDLDGRYFGGRTVRATF  366
Distribution of 104 Blast Hits on the Query Sequence
