RID=1168930717-2407-212546047300.BLASTQ4, Contig143

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168930717-2407-212546047300.BLASTQ4 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig143
Length=158

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|4091806|gb|AAC99310.1|  CONSTANS-like protein 2 [Malus x domes  75.1    7e-14 
gi|4091804|gb|AAC99309.1|  CONSTANS-like protein 1 [Malus x domes  70.1    2e-12 
gi|15450659|gb|AAK96601.1|  AT5g24930/F6A4_140 [Arabidopsis th...  48.1    9e-06 
gi|30689668|ref|NP_197875.2|  transcription factor/ zinc ion bind  48.1    9e-06 
gi|52840166|sp|Q940T9|COL4_ARATH  Zinc finger protein CONSTANS-LI  48.1    9e-06
gi|61611682|gb|AAX47173.1|  CONSTANS-LIKE b [Pisum sativum]        46.6    3e-05
gi|60459257|gb|AAX20015.1|  CONSTANS-like b [Pisum sativum]        46.6    3e-05
gi|111378451|gb|ABH09237.1|  CONSTANS-like protein [Solanum tuber  35.4    0.061
gi|92875402|gb|ABE83395.1|  Zinc finger, B-box; CCT [Medicago tru  33.5    0.23 
gi|21667485|gb|AAM74069.1|AF490474_1  CONSTANS-like protein [H...  32.3    0.52 
gi|115447239|ref|NP_001047399.1|  Os02g0610500 [Oryza sativa (...  32.0    0.68  
gi|116310719|emb|CAH67516.1|  OSIGBa0092E01.11 [Oryza sativa (ind  30.8    1.5  
gi|115459216|ref|NP_001053208.1|  Os04g0497700 [Oryza sativa (...  30.8    1.5   
gi|15232898|ref|NP_186887.1|  COL2 (CONSTANS-LIKE 2); transcri...  30.8    1.5   
gi|90657642|gb|ABD96940.1|  hypothetical protein [Cleome spinosa]  30.0    2.6  
gi|3341723|gb|AAC35496.1|  CONSTANS-like 1 protein [Raphanus sati  30.0    2.6  
gi|18409378|ref|NP_564977.1|  ATAMY3; alpha-amylase [Arabidops...  29.6    3.4   
gi|12325228|gb|AAG52558.1|AC010675_6  putative alpha-amylase; 603  29.6    3.4  
gi|15242403|ref|NP_197089.1|  COL1 (CONSTANS-LIKE 1); transcri...  29.6    3.4   
gi|10946337|gb|AAG24863.1|  CONSTANS-like protein [Ipomoea nil]    28.9    5.7  
gi|21655154|gb|AAL99264.1|  CONSTANS-like protein CO5 [Hordeum vu  28.9    5.7  
gi|40253408|dbj|BAD05338.1|  hypothetical protein [Oryza sativ...  28.5    7.5   
gi|108859399|emb|CAK26147.1|  constans-like 1 [Picea abies]        28.1    9.8

Alignments

 

>gi|4091806|gb|AAC99310.1|  CONSTANS-like protein 2 [Malus x domestica]
Length=329

 Score = 75.1 bits (183),  Expect = 7e-14
 Identities = 35/47 (74%), Positives = 43/47 (91%), Gaps = 2/47 (4%)
 Frame = +3

Query  18   VVNFLDERYFSEVDGDADVSREEAEAASWLLPNPNHKAVESPDVNTG  158
            VVNFLD+RY S+VDG+ +VSREEAEAASWLLPNP  KA+E+PD+N+G
Sbjct  111  VVNFLDDRYLSDVDGETEVSREEAEAASWLLPNP--KAMENPDLNSG  155


>gi|4091804|gb|AAC99309.1|  CONSTANS-like protein 1 [Malus x domestica]
Length=340

 Score = 70.1 bits (170),  Expect = 2e-12
 Identities = 32/46 (69%), Positives = 41/46 (89%), Gaps = 2/46 (4%)
 Frame = +3

Query  21   VNFLDERYFSEVDGDADVSREEAEAASWLLPNPNHKAVESPDVNTG  158
            VNFL++RYFS+VDG+ +  REEAEAASWLLPNP  KA+E+PD+N+G
Sbjct  112  VNFLNDRYFSDVDGEIEARREEAEAASWLLPNP--KAMENPDLNSG  155


>gi|15450659|gb|AAK96601.1|  AT5g24930/F6A4_140 [Arabidopsis thaliana]
 gi|23505811|gb|AAN28765.1|  At5g24930/F6A4_140 [Arabidopsis thaliana]
Length=232

 Score = 48.1 bits (113),  Expect = 9e-06
 Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 17/63 (26%)
 Frame = +3

Query  21   VNFLDERYFSEVDGDADVSREEAEAASW-LLPNPNHKAV----------------ESPDV  149
            VNFLD+ YFS++DG+     EE EAASW LLPNP                     +SP++
Sbjct  109  VNFLDDCYFSDIDGNGSREEEEEEAASWLLLPNPKTTTTATAGIVAVTSAEEVPGDSPEM  168

Query  150  NTG  158
            NTG
Sbjct  169  NTG  171


>gi|30689668|ref|NP_197875.2|  transcription factor/ zinc ion binding [Arabidopsis thaliana]
Length=406

 Score = 48.1 bits (113),  Expect = 9e-06
 Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 17/63 (26%)
 Frame = +3

Query  21   VNFLDERYFSEVDGDADVSREEAEAASW-LLPNPNHKAV----------------ESPDV  149
            VNFLD+ YFS++DG+     EE EAASW LLPNP                     +SP++
Sbjct  153  VNFLDDCYFSDIDGNGSREEEEEEAASWLLLPNPKTTTTATAGIVAVTSAEEVPGDSPEM  212

Query  150  NTG  158
            NTG
Sbjct  213  NTG  215


>gi|52840166|sp|Q940T9|COL4_ARATH  Zinc finger protein CONSTANS-LIKE 4
Length=362

 Score = 48.1 bits (113),  Expect = 9e-06
 Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 17/63 (26%)
 Frame = +3

Query  21   VNFLDERYFSEVDGDADVSREEAEAASW-LLPNPNHKAV----------------ESPDV  149
            VNFLD+ YFS++DG+     EE EAASW LLPNP                     +SP++
Sbjct  109  VNFLDDCYFSDIDGNGSREEEEEEAASWLLLPNPKTTTTATAGIVAVTSAEEVPGDSPEM  168

Query  150  NTG  158
            NTG
Sbjct  169  NTG  171


>gi|61611682|gb|AAX47173.1|  CONSTANS-LIKE b [Pisum sativum]
Length=312

 Score = 46.6 bits (109),  Expect = 3e-05
 Identities = 23/40 (57%), Positives = 30/40 (75%), Gaps = 2/40 (5%)
 Frame = +3

Query  36   ERYFSEVDGDADVSREEAEAASWLLPNPNHKAVESPDVNT  155
            +++FSE D DADVS EEAEAASWLL  P +   + PD+N+
Sbjct  100  QQFFSESDPDADVSTEEAEAASWLLQTPANP--KGPDLNS  137


>gi|60459257|gb|AAX20015.1|  CONSTANS-like b [Pisum sativum]
Length=312

 Score = 46.6 bits (109),  Expect = 3e-05
 Identities = 23/40 (57%), Positives = 30/40 (75%), Gaps = 2/40 (5%)
 Frame = +3

Query  36   ERYFSEVDGDADVSREEAEAASWLLPNPNHKAVESPDVNT  155
            +++FSE D DADVS EEAEAASWLL  P +   + PD+N+
Sbjct  100  QQFFSESDPDADVSTEEAEAASWLLQTPANP--KGPDLNS  137


>gi|111378451|gb|ABH09237.1|  CONSTANS-like protein [Solanum tuberosum]
Length=360

 Score = 35.4 bits (80),  Expect = 0.061
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 0/29 (0%)
 Frame = +3

Query  33   DERYFSEVDGDADVSREEAEAASWLLPNP  119
            DE+YF     +     EEAEAASW+LP P
Sbjct  122  DEKYFDSTSENPSQPEEEAEAASWILPIP  150


>gi|92875402|gb|ABE83395.1|  Zinc finger, B-box; CCT [Medicago truncatula]
Length=375

 Score = 33.5 bits (75),  Expect = 0.23
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +3

Query  54   VDGDADVSREEAEAASWLLPNPN--HKAVESPDVNT  155
            V  D    +++AEAA+WL+PNPN   K  E+ D+ T
Sbjct  135  VPTDDGYGQDDAEAAAWLIPNPNFGSKLNETQDIKT  170


>gi|21667485|gb|AAM74069.1|AF490474_1  CONSTANS-like protein [Hordeum vulgare subsp. vulgare]
 gi|21667487|gb|AAM74070.1|AF490475_1  CONSTANS-like protein [Hordeum vulgare subsp. vulgare]
Length=323

 Score = 32.3 bits (72),  Expect = 0.52
 Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 0/20 (0%)
 Frame = +3

Query  69   DVSREEAEAASWLLPNPNHK  128
            D    +AEAASWLLP P+HK
Sbjct  132  DDGSNDAEAASWLLPEPDHK  151


>gi|115447239|ref|NP_001047399.1|  Os02g0610500 [Oryza sativa (japonica cultivar-group)]
 gi|47497178|dbj|BAD19225.1|  putative COL1 protein [Oryza sativa (japonica cultivar-group)]
 gi|113536930|dbj|BAF09313.1|  Os02g0610500 [Oryza sativa (japonica cultivar-group)]
Length=332

 Score = 32.0 bits (71),  Expect = 0.68
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 9/40 (22%)
 Frame = +3

Query  45   FSEVDGDADVSREE---------AEAASWLLPNPNHKAVE  137
            FS+   DA  +REE         AEAASWLLP P+  + E
Sbjct  130  FSQAAADAAAAREEDADDDRSNEAEAASWLLPEPDDNSHE  169


>gi|116310719|emb|CAH67516.1|  OSIGBa0092E01.11 [Oryza sativa (indica cultivar-group)]
Length=331

 Score = 30.8 bits (68),  Expect = 1.5
 Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 4/26 (15%)
 Frame = +3

Query  60   GDA----DVSREEAEAASWLLPNPNH  125
            GDA    D    +AEAASWLLP P+H
Sbjct  124  GDAAAADDDGSNDAEAASWLLPEPDH  149


>gi|115459216|ref|NP_001053208.1|  Os04g0497700 [Oryza sativa (japonica cultivar-group)]
 gi|38345390|emb|CAE03116.2|  OSJNBa0067K08.19 [Oryza sativa (japonica cultivar-group)]
 gi|113564779|dbj|BAF15122.1|  Os04g0497700 [Oryza sativa (japonica cultivar-group)]
Length=333

 Score = 30.8 bits (68),  Expect = 1.5
 Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 4/26 (15%)
 Frame = +3

Query  60   GDA----DVSREEAEAASWLLPNPNH  125
            GDA    D    +AEAASWLLP P+H
Sbjct  124  GDAAAADDDGSNDAEAASWLLPEPDH  149


>gi|15232898|ref|NP_186887.1|  COL2 (CONSTANS-LIKE 2); transcription factor/ zinc ion binding 
[Arabidopsis thaliana]
 gi|17433030|sp|Q96502|COL2_ARATH  Zinc finger protein CONSTANS-LIKE 2
 gi|10092178|gb|AAG12597.1|AC068900_3  putative flowering-time gene CONSTANS (COL2); 19155-17969 [Arabidopsis 
thaliana]
 gi|13877773|gb|AAK43964.1|AF370149_1  putative flowering-time gene CONSTANS protein COL2 [Arabidopsis 
thaliana]
 gi|1507699|gb|AAB67879.1|  COL2 [Arabidopsis thaliana]
 gi|1507701|gb|AAB67880.1|  COL2 [Arabidopsis thaliana]
 gi|6957702|gb|AAF32446.1|  COL2 [Arabidopsis thaliana]
 gi|16323408|gb|AAL15198.1|  putative flowering-time gene CONSTANS protein COL2 [Arabidopsis 
thaliana]
 gi|21618042|gb|AAM67092.1|  zinc finger protein CONSTANS-like 2 [Arabidopsis thaliana]
Length=347

 Score = 30.8 bits (68),  Expect = 1.5
 Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 0/19 (0%)
 Frame = +3

Query  63   DADVSREEAEAASWLLPNP  119
            DAD   ++ E ASWLLPNP
Sbjct  118  DADNDEDDREVASWLLPNP  136


>gi|90657642|gb|ABD96940.1|  hypothetical protein [Cleome spinosa]
Length=381

 Score = 30.0 bits (66),  Expect = 2.6
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
 Frame = +3

Query  36   ERYFSEVDGDADVSREEAE--------AASWLLPNPNHKAVESPDVNTG  158
            E   ++ + D  V REEAE        AASWLL NP   +  + + N G
Sbjct  124  ETAMTDTENDMVVGREEAEDEDEDDEEAASWLLLNPGKNSGNNNNQNNG  172


>gi|3341723|gb|AAC35496.1|  CONSTANS-like 1 protein [Raphanus sativus]
Length=307

 Score = 30.0 bits (66),  Expect = 2.6
 Identities = 18/32 (56%), Positives = 21/32 (65%), Gaps = 6/32 (18%)
 Frame = +3

Query  63   DADVSREEAEAASWLLPNPNHK---AVESPDV  149
            DADVS E   A SWLLPNP+ K    VE P++
Sbjct  119  DADVSME---AVSWLLPNPSVKEGVVVEIPNL  147


>gi|18409378|ref|NP_564977.1|  ATAMY3; alpha-amylase [Arabidopsis thaliana]
 gi|15215738|gb|AAK91414.1|  At1g69830/T17F3_14 [Arabidopsis thaliana]
 gi|23308479|gb|AAN18209.1|  At1g69830/T17F3_14 [Arabidopsis thaliana]
Length=887

 Score = 29.6 bits (65),  Expect = 3.4
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 0/43 (0%)
 Frame = -1

Query  134  HSFMVRVGKQPRGRLRFLPTDVRVSVHFRKITLVQEVNNSVGL  6
            HS++    K  RG   F+P  + +  HF    L+  +  SVG+
Sbjct  12   HSYLRHNSKVNRGNRSFIPISLNLRSHFTSNKLLHSIGKSVGV  54


>gi|12325228|gb|AAG52558.1|AC010675_6  putative alpha-amylase; 60344-64829 [Arabidopsis thaliana]
Length=826

 Score = 29.6 bits (65),  Expect = 3.4
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 0/43 (0%)
 Frame = -1

Query  134  HSFMVRVGKQPRGRLRFLPTDVRVSVHFRKITLVQEVNNSVGL  6
            HS++    K  RG   F+P  + +  HF    L+  +  SVG+
Sbjct  12   HSYLRHNSKVNRGNRSFIPISLNLRSHFTSNKLLHSIGKSVGV  54


>gi|15242403|ref|NP_197089.1|  COL1 (CONSTANS-LIKE 1); transcription factor/ zinc ion binding 
[Arabidopsis thaliana]
 gi|17432980|sp|O50055|COL1_ARATH  Zinc finger protein CONSTANS-LIKE 1
 gi|2695703|emb|CAA71587.1|  CONSTANS [Arabidopsis thaliana]
 gi|2695705|emb|CAA71588.1|  constans-like protein 1 [Arabidopsis thaliana]
 gi|9755630|emb|CAC01784.1|  CONSTANS-like 1 [Arabidopsis thaliana]
 gi|18389244|gb|AAL67065.1|  putative CONSTANS 1 protein [Arabidopsis thaliana]
 gi|26983888|gb|AAN86196.1|  putative CONSTANS 1 protein [Arabidopsis thaliana]
Length=355

 Score = 29.6 bits (65),  Expect = 3.4
 Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 0/19 (0%)
 Frame = +3

Query  60   GDADVSREEAEAASWLLPN  116
            G  +   +EAEAASWLLPN
Sbjct  128  GQEEEDEDEAEAASWLLPN  146


>gi|10946337|gb|AAG24863.1|  CONSTANS-like protein [Ipomoea nil]
Length=417

 Score = 28.9 bits (63),  Expect = 5.7
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = +3

Query  33   DERYFSEVDGDADVSREEAEAASWLL----PNPNHKAVES  140
            D  + ++   +  +  +E EAASWLL    PNPN   V+S
Sbjct  152  DNGFLTQDAEETTMDEDEDEAASWLLLNPNPNPNPNPVKS  191


>gi|21655154|gb|AAL99264.1|  CONSTANS-like protein CO5 [Hordeum vulgare subsp. vulgare]
Length=325

 Score = 28.9 bits (63),  Expect = 5.7
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 0/24 (0%)
 Frame = +3

Query  69   DVSREEAEAASWLLPNPNHKAVES  140
            D    EAEAASWLLP P     +S
Sbjct  140  DDGSNEAEAASWLLPEPGDSPEDS  163


>gi|40253408|dbj|BAD05338.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
 gi|42761307|dbj|BAD11550.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length=292

 Score = 28.5 bits (62),  Expect = 7.5
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 13/38 (34%)
 Frame = +1

Query  13   TELLTSWTSVIFRKWTETRTSVGRKRR----RPRGCFP  114
            T+LL  W +V         TS+G+ RR    RPRGCFP
Sbjct  123  TKLLGRWLAV---------TSLGQHRRAVERRPRGCFP  151


>gi|108859399|emb|CAK26147.1|  constans-like 1 [Picea abies]
Length=410

 Score = 28.1 bits (61),  Expect = 9.8
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +3

Query  51   EVDGDADVS-REEAEAASWLLPNPN  122
            E D DA++   EEA  ASWL+P  N
Sbjct  158  EXDNDAEICCAEEAATASWLIPEAN  182

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 92
Number of extensions: 4
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 158
Length of database: 101054579
Length adjustment: 25
Effective length of query: 133
Effective length of database: 93970854
Effective search space: 2537213058
Effective search space used: 2537213058
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 61 (28.1 bits)

Distribution of 23 Blast Hits on the Query Sequence