>gi|119888006|gb|ABM05955.1|  proline-rich protein [Gossypium hirsutum]
Length=164

 Score = 79.7 bits (195),  Expect = 2e-14
 Identities = 52/123 (42%), Positives = 73/123 (59%), Gaps = 32/123 (26%)
 Frame = +1

Query  304  MSLSHQSHQYMNLSHQFMNLSHQSHQFMSLQRSLRCMSLQRNHQYMNLSHQSHQFMNLSH  483
            +S++HQ  + ++LSHQF++L              R  SL  NHQYMNL  Q  + ++L  
Sbjct  6    LSMNHQRRKSLSLSHQFIHLQ-------------RKRSLNPNHQYMNL--QRRKSLSL--  48

Query  484  QSHQFMNLQRKRSQNPNHQYMSLQRSLQCMNLSHQNHQYMNLSHQNRQFMNLRRKRSQSP  663
             SHQF++ QRKRS +PNHQYM+ QR  + +NLSH             QF++ +RKRS SP
Sbjct  49   -SHQFIHHQRKRSLSPNHQYMNPQRR-KSLNLSH-------------QFIHHQRKRSLSP  93

Query  664  NHR  672
            NH+
Sbjct  94   NHQ  96


 Score = 75.9 bits (185),  Expect = 2e-13
 Identities = 42/99 (42%), Positives = 67/99 (67%), Gaps = 9/99 (9%)
 Frame = +1

Query  439  MNLSHQSHQFMNLSHQSHQFMNLQRKRSQNPNHQYMSLQRSLQCMNLSHQ--NHQYMNLS  612
            ++++HQ  + ++LSHQ   F++LQRKRS NPNHQYM+LQR  + ++LSHQ  +HQ     
Sbjct  6    LSMNHQRRKSLSLSHQ---FIHLQRKRSLNPNHQYMNLQRR-KSLSLSHQFIHHQRKRSL  61

Query  613  HQNRQFMNLRRKRSQSPNHRFTNLRRSHQYMNLLRNHRC  729
              N Q+MN +R++S + +H+F + +R     +L  NH+C
Sbjct  62   SPNHQYMNPQRRKSLNLSHQFIHHQRKR---SLSPNHQC  97


 Score = 64.7 bits (156),  Expect = 5e-10
 Identities = 55/143 (38%), Positives = 75/143 (52%), Gaps = 48/143 (33%)
 Frame = +1

Query  112  NPNPLSMNPQrrrsrspshrFTNLQRRKSQNPNHQFMNLPRNHRCMSLQRNRQFMNLSLQ  291
            N +PLSMN QRR+S S SH+F +LQR++S NPNHQ+MNL R              +LSL 
Sbjct  2    NISPLSMNHQRRKSLSLSHQFIHLQRKRSLNPNHQYMNLQRR------------KSLSL-  48

Query  292  SHQFMSLSHQSHQYMNLSHQFMNLSHQSHQFMSLQRSLRCMSLQRNHQYMNLSHQSHQFM  471
            SHQF  + HQ  + ++ +HQ+MN                     +  + +NLS       
Sbjct  49   SHQF--IHHQRKRSLSPNHQYMN--------------------PQRRKSLNLS-------  79

Query  472  NLSHQSHQFMNLQRKRSQNPNHQ  540
                  HQF++ QRKRS +PNHQ
Sbjct  80   ------HQFIHHQRKRSLSPNHQ  96


 Score = 48.9 bits (115),  Expect = 3e-05
 Identities = 41/92 (44%), Positives = 56/92 (60%), Gaps = 17/92 (18%)
 Frame = +1

Query  82   HQFTNLQR--SQNPNPLSMNPQrrrsrspshrFTNLQRRKSQNPNHQFMNLPRNHRCMSL  255
            HQF +LQR  S NPN   MN QRR+S S SH+F + QR++S +PNHQ+MN  R       
Sbjct  20   HQFIHLQRKRSLNPNHQYMNLQRRKSLSLSHQFIHHQRKRSLSPNHQYMNPQR-------  72

Query  256  QRNRQFMNLSLQSHQFMSLSHQSHQYMNLSHQ  351
               R+ +NL   SHQF  + HQ  + ++ +HQ
Sbjct  73   ---RKSLNL---SHQF--IHHQRKRSLSPNHQ  96


 Score = 37.7 bits (86),  Expect = 0.070
 Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
 Frame = +1

Query  82   HQFTNLQR--SQNPNPLSMNPQrrrsrspshrFTNLQRRKSQNPNHQFMNLPRNHR  243
            HQF + QR  S +PN   MNPQRR+S + SH+F + QR++S +PNHQ    P+  +
Sbjct  50   HQFIHHQRKRSLSPNHQYMNPQRRKSLNLSHQFIHHQRKRSLSPNHQCHGPPKKEK  105


>gi|806310|gb|AAA66288.1|  proline-rich protein
Length=185

 Score = 77.4 bits (189),  Expect = 8e-14
 Identities = 72/213 (33%), Positives = 110/213 (51%), Gaps = 38/213 (17%)
 Frame = +1

Query  64   PQFTNHHQFTNLQRSQNPNPLSMNPQrrrsrspshrFTNLQRRKSQNPNHQFMNLPR-NH  240
            PQFT+H  FT+ Q         ++PQ +  +  + +FT+LQ +     NH F++L   +H
Sbjct  4    PQFTSH-LFTHRQ--------FISPQLKNHQCTNLQFTSLQLK-----NHLFISLQFISH  49

Query  241  RCMSLQRNRQFMNLSLQSHQFMSLSHQSHQYMNL---SHQFMNLSHQSHQFMSLQ-RSLR  408
               SLQ     +NL L++H+F SL   +H + +L   + Q  N    SHQF S Q  SL+
Sbjct  50   PFTSLQ----CINLQLKNHRFTSLQFINHLFTSLQCINPQLKNHPFISHQFTSHQCTSLQ  105

Query  409  CMSLQ-RNHQYMNLSHQSHQFMNLSHQSHQFMNLQRKRSQNPNHQYMSLQRSLQCMNLSH  585
            C+S Q  +HQ  +   +SHQ+ N    SHQF + Q    Q  +HQ  SLQ    C +  +
Sbjct  106  CISHQFTSHQCTSHQLRSHQYTNHPFISHQFTSHQCTSHQLRSHQCTSLQ----CTSHQY  161

Query  586  QNHQYMNLSHQNRQFMNLRRKRSQSPNHRFTNL  684
             NHQ+++L  +N  F           +H+FT+L
Sbjct  162  TNHQFISLQLRNLLF----------TSHQFTSL  184


 Score = 73.6 bits (179),  Expect = 1e-12
 Identities = 60/188 (31%), Positives = 93/188 (49%), Gaps = 39/188 (20%)
 Frame = +1

Query  232  RNHRCMSLQRNRQFMNLSLQSHQFMSLSHQSHQYMNLSHQFMNLSHQSHQFMSLQ-----  396
            +NH+C +LQ    F +L L++H F+SL   SH + +L  Q +NL  ++H+F SLQ     
Sbjct  22   KNHQCTNLQ----FTSLQLKNHLFISLQFISHPFTSL--QCINLQLKNHRFTSLQFINHL  75

Query  397  -RSLRCMSLQ-RNHQYMNLSHQSHQFMNLSHQSHQFMNLQRKRSQNPNHQYMSLQRSLQC  570
              SL+C++ Q +NH +++    SHQ  +L   SHQF                    S QC
Sbjct  76   FTSLQCINPQLKNHPFISHQFTSHQCTSLQCISHQFT-------------------SHQC  116

Query  571  MNLSHQNHQYMNLSHQNRQFMNLRRKRSQSPNHRFTNLR-RSHQYMN------LLRNHRC  729
             +   ++HQY N    + QF + +    Q  +H+ T+L+  SHQY N       LRN   
Sbjct  117  TSHQLRSHQYTNHPFISHQFTSHQCTSHQLRSHQCTSLQCTSHQYTNHQFISLQLRNLLF  176

Query  730  MSHLMVTI  753
             SH   ++
Sbjct  177  TSHQFTSL  184


 Score = 71.6 bits (174),  Expect = 4e-12
 Identities = 66/188 (35%), Positives = 96/188 (51%), Gaps = 34/188 (18%)
 Frame = +1

Query  259  RNRQFMNLSLQSHQFMSLSHQSHQYMNLSHQFMNLSHQSHQFMSLQ------RSLRCMSL  420
            R+ QF +      QF+S   ++HQ  NL  QF +L  ++H F+SLQ       SL+C++L
Sbjct  2    RSPQFTSHLFTHRQFISPQLKNHQCTNL--QFTSLQLKNHLFISLQFISHPFTSLQCINL  59

Query  421  Q-RNHQYMNLSHQSHQFMNLSHQSHQFMNLQRKRSQNPNHQYMSLQ-RSLQCMNLSHQNH  594
            Q +NH++ +L   +H F +L     Q +N Q K     +HQ+ S Q  SLQC  +SHQ  
Sbjct  60   QLKNHRFTSLQFINHLFTSL-----QCINPQLKNHPFISHQFTSHQCTSLQC--ISHQFT  112

Query  595  QYMNLSHQNRQFMNLRRKRSQSPNHRFTNLRRSHQYMNLLRNHRCMSHLMVTIQDT-LQW  771
             +   SHQ R          Q  NH F     SHQ+     +H+C SH + + Q T LQ 
Sbjct  113  SHQCTSHQLRS--------HQYTNHPFI----SHQF----TSHQCTSHQLRSHQCTSLQC  156

Query  772  GSHKTSPH  795
             SH+ + H
Sbjct  157  TSHQYTNH  164


>gi|553111|gb|AAA33969.1|  hydroproline-rich protein
Length=121

 Score = 69.7 bits (169),  Expect = 2e-11
 Identities = 56/138 (40%), Positives = 73/138 (52%), Gaps = 25/138 (18%)
 Frame = +1

Query  235  NHRCMSLQRNRQFMNLSLQSHQFMSLSHQSHQYMNLSHQFMNLSHQSHQFMSLQRSLRCM  414
            NHR  SLQ     +N  L++H F+S     HQ+   SHQ  +L   SH F S Q    C 
Sbjct  1    NHRFTSLQ----CINPQLKNHPFIS-----HQFT--SHQCTSLQFTSHPFTSHQ----CT  45

Query  415  SLQ-RNHQYMNLSHQSHQFMN---LSHQ--SHQFMNLQRKRSQNPNHQYMSLQRSLQCMN  576
            S Q R+HQY N    SHQF +    SHQ  SHQ  +LQ    Q  NHQ++    SLQC +
Sbjct  46   SHQLRSHQYTNHPFISHQFTSHQCTSHQLRSHQCTSLQCTSHQYTNHQFI----SLQCTS  101

Query  577  LSHQNHQYMNLSHQNRQF  630
              + NHQ+++L  +N  F
Sbjct  102  HQYTNHQFISLQLRNLLF  119


 Score = 49.7 bits (117),  Expect = 2e-05
 Identities = 50/124 (40%), Positives = 65/124 (52%), Gaps = 32/124 (25%)
 Frame = +1

Query  43   NLPR*SHPQFTNHHQFTNLQRSQNPNPLSMNPQrrrsrspshrFTNLQRRKSQNPNHQFM  222
            N P  SH QFT+H Q T+LQ + +P               SH+ T+ Q R  Q  NH F+
Sbjct  16   NHPFISH-QFTSH-QCTSLQFTSHP-------------FTSHQCTSHQLRSHQYTNHPFI  60

Query  223  NLP-RNHRCMSLQRNRQFMNLSLQSHQFMSLSHQSHQYMNLSHQFMNL---SHQ--SHQF  384
            +    +H+C S Q         L+SHQ  SL   SHQY N  HQF++L   SHQ  +HQF
Sbjct  61   SHQFTSHQCTSHQ---------LRSHQCTSLQCTSHQYTN--HQFISLQCTSHQYTNHQF  109

Query  385  MSLQ  396
            +SLQ
Sbjct  110  ISLQ  113


 Score = 44.7 bits (104),  Expect = 6e-04
 Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 31/136 (22%)
 Frame = +1

Query  373  SHQFMSLQRSLRCMSLQ-RNHQYMNLSHQSHQFMNLSHQSHQFMNLQRKRSQNPNHQYMS  549
            +H+F SLQ    C++ Q +NH +++    SHQ  +L   SH F                 
Sbjct  1    NHRFTSLQ----CINPQLKNHPFISHQFTSHQCTSLQFTSHPFT----------------  40

Query  550  LQRSLQCMNLSHQNHQYMNLSHQNRQFMNLRRKRSQSPNHRFTNLR-RSHQYMN------  708
               S QC +   ++HQY N    + QF + +    Q  +H+ T+L+  SHQY N      
Sbjct  41   ---SHQCTSHQLRSHQYTNHPFISHQFTSHQCTSHQLRSHQCTSLQCTSHQYTNHQFISL  97

Query  709  LLRNHRCMSHLMVTIQ  756
               +H+  +H  +++Q
Sbjct  98   QCTSHQYTNHQFISLQ  113


>gi|225641|prf||1308219B  ORF 2
Length=203

 Score = 61.2 bits (147),  Expect = 6e-09
 Identities = 64/196 (32%), Positives = 91/196 (46%), Gaps = 27/196 (13%)
 Frame = +1

Query  217  FMNLPRNHRCMS--LQRNR-QFMNLSLQSHQFMSLSHQSHQYMNLSHQFMNLSHQSHQFM  387
            ++ L RNH   +  L RNR Q  NL +++H  M + H+S  ++  SHQ  N   +SH   
Sbjct  10   YLLLMRNHHQNTYLLMRNRHQNTNLLMRNHP-MRIHHRSTNHLMRSHQSTNHLMRSHH-Q  67

Query  388  SLQRSLRCMSLQRNHQYMNLSHQSHQFMNLSHQSHQFMN-LQRKRSQNPNHQYMSLQRSL  564
            S+   +R      NH  M   HQ+   +  +H  HQ  N L R   Q+ NH   S Q + 
Sbjct  68   SMNHLMRNHHQNTNH-LMRSHHQNTNHLMRNH--HQNTNHLMRSHHQSTNHLMRSHQSTS  124

Query  565  QCMNLSHQNHQYMNLSHQNRQFMNLRRKRSQSPNHR-FTNL--RRSHQYMN---------  708
              M   HQ+  ++  +H   Q  NL +K     NHR  TNL  +  HQ  N         
Sbjct  125  HLMRSHHQSINHLMRNH--HQNTNLLKKSHHMKNHRQNTNLLMKSHHQNTNLPLKSHHQC  182

Query  709  ---LLRN-HRCMSHLM  744
               L+RN H+CM+ LM
Sbjct  183  THPLMRNHHQCMNPLM  198


 Score = 50.8 bits (120),  Expect = 8e-06
 Identities = 61/203 (30%), Positives = 79/203 (38%), Gaps = 44/203 (21%)
 Frame = +1

Query  22   NHLLLFTNLPR*SHPQFTNH----HQFTN-LQRSQNPNPLSMNPQrrrsrspshrFTNLQ  186
            N  LL  N P   H + TNH    HQ TN L RS +    SMN              +L 
Sbjct  31   NTNLLMRNHPMRIHHRSTNHLMRSHQSTNHLMRSHHQ---SMN--------------HLM  73

Query  187  RRKSQNPNHQFMNLPRNHRCMSLQRNRQFMNLSLQSHQFMSLSHQSHQYMNLSHQFMNLS  366
            R   QN NH    L R+H       N    N    ++  M   HQS  ++  SHQ     
Sbjct  74   RNHHQNTNH----LMRSHH---QNTNHLMRNHHQNTNHLMRSHHQSTNHLMRSHQ-----  121

Query  367  HQSHQFMSLQRSLRCMSLQRNHQYMNLSHQSHQFMN-------LSHQSHQFMNLQRKRSQ  525
              SH   S  +S+  + ++ +HQ  NL  +SH   N       L    HQ  NL  K   
Sbjct  122  STSHLMRSHHQSINHL-MRNHHQNTNLLKKSHHMKNHRQNTNLLMKSHHQNTNLPLKSHH  180

Query  526  NPNHQYMSLQRSLQCMNLSHQNH  594
               H  M  +   QCMN   ++H
Sbjct  181  QCTHPLM--RNHHQCMNPLMRSH  201


>gi|51997115|emb|CAH03798.1|  Gtt5 protein [Gerbera hybrid cultivar]
Length=157

 Score = 49.7 bits (117),  Expect = 2e-05
 Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
 Frame = +1

Query  295  HQFMSLSHQSHQYMNLSHQFMNLSH-------QSHQFMSLQRSLRCMSLQR--NHQYMNL  447
            HQF S+SH      +  HQF +++H         HQF S+     C  +Q+  +HQ+ ++
Sbjct  2    HQFQSISHCHLIQKSCHHQFRSINHCHLIQKSCHHQFRSIN---HCHLIQKSCHHQFRSI  58

Query  448  SHQSHQFMNLSHQSHQFMNLQRKRSQNPNHQYMSLQRSLQCMNLSHQNHQYMNLSHQNRQ  627
            SH  H      H   Q +N  R   ++ +HQ++S+ +        H  HQ+ ++SH +  
Sbjct  59   SH-CHLIQKSCHHQFQSINHCRLIQKSCHHQFLSISQCHLIQKSCH--HQFRSISHSHHS  115

Query  628  FMNLRRK  648
              +  R+
Sbjct  116  TRSHARR  122


 Score = 38.9 bits (89),  Expect = 0.032
 Identities = 31/113 (27%), Positives = 59/113 (52%), Gaps = 24/113 (21%)
 Frame = +1

Query  208  NHQFMNLPRNHRCMSLQRN--RQFMNLS----LQS---HQFMSLSHQS-------HQYMN  339
            +HQF ++  NH C  +Q++   QF +++    +Q    HQF S+SH         HQ+ +
Sbjct  18   HHQFRSI--NH-CHLIQKSCHHQFRSINHCHLIQKSCHHQFRSISHCHLIQKSCHHQFQS  74

Query  340  LSHQFMNLSHQSHQFMSLQRSLRCMSLQR--NHQYMNLSHQSHQFMNLSHQSH  492
            ++H  +      HQF+S+    +C  +Q+  +HQ+ ++SH  H   + + + H
Sbjct  75   INHCRLIQKSCHHQFLSIS---QCHLIQKSCHHQFRSISHSHHSTRSHARRFH  124


 Score = 31.2 bits (69),  Expect = 6.6
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 11/70 (15%)
 Frame = +1

Query  208  NHQFMNLPRNHRCMSLQRNRQFMNLSLQSHQFMSLSHQSHQYMNLSHQFMNLSHQSHQFM  387
            +HQF ++  NH C  +Q++          HQF+S+S       +  HQF ++SH  H   
Sbjct  69   HHQFQSI--NH-CRLIQKSCH--------HQFLSISQCHLIQKSCHHQFRSISHSHHSTR  117

Query  388  SLQRSLRCMS  417
            S  R    +S
Sbjct  118  SHARRFHFLS  127


>gi|50511375|gb|AAT77298.1|  unknown protein [Oryza sativa (japonica cultivar-group)]
Length=254

 Score = 47.0 bits (110),  Expect = 1e-04
 Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 30/185 (16%)
 Frame = +1

Query  181  LQRRKSQNPNHQFMNLPRNHR-CMSLQRNR-QFMNLSLQSHQFMSLSHQSHQYMNLSHQF  354
            L RR+S     Q M+  R+ R C+   R+R + +  SL  +Q  SL+    Q  +  H  
Sbjct  34   LTRRQSLG---QKMSPSRSQRQCLRRSRSRSRQLTRSLSPNQRQSLNQNQSQRQSPRH--  88

Query  355  MNLSHQSHQFMSLQRSLRCMSLQRNHQYMNLSHQSHQFMNLSHQSHQFMNLQRKRSQNPN  534
               + +  Q +SL +S          Q  + +   +Q  +LSH  +Q   L+R +S NP+
Sbjct  89   ---NQKQSQSLSLSQS----------QSPSYTQNQNQSPSLSHSQNQIPRLRRSQSLNPS  135

Query  535  HQYMSLQRSLQCMNLSHQNHQYMNLSHQNRQFMNLRRK--RSQSPNHRFTNLRRSHQYMN  708
               ++L RSL      H+ +Q  N +   RQ  +L R+  RSQS +H  +  +  +    
Sbjct  136  ---LNLNRSLP-----HRLNQRQNRNQNQRQSQSLSRRLNRSQSESHTQSQNQNQNPSQK  187

Query  709  LLRNH  723
              +NH
Sbjct  188  QKQNH  192


 Score = 46.6 bits (109),  Expect = 2e-04
 Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 8/165 (4%)
 Frame = +1

Query  190  RKSQNPNHQFMNLPRNHRCMSLQRN---RQFMNLSLQSHQFMSLSH-QSHQYMNLSHQFM  357
            R+S++ + Q       ++  SL +N   RQ    + +  Q +SLS  QS  Y    +Q  
Sbjct  55   RRSRSRSRQLTRSLSPNQRQSLNQNQSQRQSPRHNQKQSQSLSLSQSQSPSYTQNQNQSP  114

Query  358  NLSHQSHQFMSLQRSLRCM-SLQRNHQYMNLSHQSHQFMNLSHQSHQFMNLQRKRSQNPN  534
            +LSH  +Q   L+RS     SL  N    +L H+ +Q  N +    Q  +L R+ +++ +
Sbjct  115  SLSHSQNQIPRLRRSQSLNPSLNLNR---SLPHRLNQRQNRNQNQRQSQSLSRRLNRSQS  171

Query  535  HQYMSLQRSLQCMNLSHQNHQYMNLSHQNRQFMNLRRKRSQSPNH  669
              +   Q   Q  +   + +   +LS         RRKR + P H
Sbjct  172  ESHTQSQNQNQNPSQKQKQNHSQSLSPSQNPSQPQRRKRLRRPTH  216


>gi|114205376|gb|AAD23383.3|AF108140_1  gamete-specific homeodomain protein GSP1 [Chlamydomonas reinhardtii]
 gi|114205378|gb|AAL14119.3|  gamete-specific homeodomain protein [Chlamydomonas reinhardtii]
Length=1035

 Score = 46.2 bits (108),  Expect = 2e-04
 Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 9/109 (8%)
 Frame = +1

Query  289  QSHQFMSLSHQSHQYMNLSHQFMNLSHQSHQFMSLQRSLRCMSLQRNHQYMNLS------  450
            +  Q +   HQ +QY    HQ  +L  Q  Q+      L    +Q  HQ+  L       
Sbjct  233  EQQQMLYAYHQHNQY---HHQQQHLQPQHQQYQQYPPQLPHQQVQHQHQHTALGSPPVQH  289

Query  451  HQSHQFMNLSHQSHQFMNLQRKRSQNPNHQYMSLQRSLQCMNLSHQNHQ  597
            HQ HQ     HQ HQ  +    +   P   + +  R L   + SHQ+HQ
Sbjct  290  HQHHQHHQHHHQHHQHHHQHHHQQHVPAGAHHAAARPLPPNHQSHQHHQ  338


>gi|18394483|ref|NP_564023.1|  transcription initiation factor [Arabidopsis thaliana]
 gi|30685323|ref|NP_849680.1|  transcription initiation factor [Arabidopsis thaliana]
 gi|15810159|gb|AAL07223.1|  unknown protein [Arabidopsis thaliana]
 gi|20259253|gb|AAM14362.1|  unknown protein [Arabidopsis thaliana]
 gi|39545906|gb|AAR28016.1|  TAF12b [Arabidopsis thaliana]
Length=683

 Score = 42.4 bits (98),  Expect = 0.003
 Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 10/121 (8%)
 Frame = +1

Query  280  LSLQSHQFMSLSHQSHQYMNLSHQFMNLSHQSHQF-MSLQRSLRCMSLQRNHQYMNLSHQ  456
            L     Q + L  Q  Q   LS      S Q HQ  MSL +      +Q+  Q   L   
Sbjct  387  LQPSQRQALLLQQQQQQQQQLS------SPQLHQSSMSLNQQQISQIIQQQQQQSQLGQS  440

Query  457  SHQFMNLSHQSHQFMNLQRKRSQNPNHQYMSLQRSLQCMNLSHQNHQYMNLSHQNRQFMN  636
                MN SH   Q   +Q++  Q P  Q    Q+  Q M ++ Q      LSH  ++ ++
Sbjct  441  Q---MNQSHSQQQLQQMQQQLQQQPQQQMQQQQQQQQQMQINQQQPSPRMLSHAGQKSVS  497

Query  637  L  639
            L
Sbjct  498  L  498


 Score = 32.0 bits (71),  Expect = 3.9
 Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 8/125 (6%)
 Frame = +1

Query  385  MSLQRSLRCMSLQRNHQYMNLSHQSHQFMNLSHQSHQFMNLQ----RKRSQNPNHQYMSL  552
            +S Q+ L+ MS   +     L     Q + L  Q  Q   L      + S + N Q +S 
Sbjct  367  LSQQQWLKQMSGITSPNSFRLQPSQRQALLLQQQQQQQQQLSSPQLHQSSMSLNQQQIS-  425

Query  553  QRSLQCMNLSHQNHQYMNLSHQNRQFMNLRRKRSQSPNHRFTNLRRSHQYMNLLRNH---  723
            Q   Q    S      MN SH  +Q   ++++  Q P  +    ++  Q M + +     
Sbjct  426  QIIQQQQQQSQLGQSQMNQSHSQQQLQQMQQQLQQQPQQQMQQQQQQQQQMQINQQQPSP  485

Query  724  RCMSH  738
            R +SH
Sbjct  486  RMLSH  490


>gi|8778478|gb|AAF79486.1|AC022492_30  F1L3.13 [Arabidopsis thaliana]
Length=734

 Score = 42.4 bits (98),  Expect = 0.003
 Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 10/121 (8%)
 Frame = +1

Query  280  LSLQSHQFMSLSHQSHQYMNLSHQFMNLSHQSHQF-MSLQRSLRCMSLQRNHQYMNLSHQ  456
            L     Q + L  Q  Q   LS      S Q HQ  MSL +      +Q+  Q   L   
Sbjct  384  LQPSQRQALLLQQQQQQQQQLS------SPQLHQSSMSLNQQQISQIIQQQQQQSQLGQS  437

Query  457  SHQFMNLSHQSHQFMNLQRKRSQNPNHQYMSLQRSLQCMNLSHQNHQYMNLSHQNRQFMN  636
                MN SH   Q   +Q++  Q P  Q    Q+  Q M ++ Q      LSH  ++ ++
Sbjct  438  Q---MNQSHSQQQLQQMQQQLQQQPQQQMQQQQQQQQQMQINQQQPSPRMLSHAGQKSVS  494

Query  637  L  639
            L
Sbjct  495  L  495


 Score = 32.0 bits (71),  Expect = 3.9
 Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 8/125 (6%)
 Frame = +1

Query  385  MSLQRSLRCMSLQRNHQYMNLSHQSHQFMNLSHQSHQFMNLQ----RKRSQNPNHQYMSL  552
            +S Q+ L+ MS   +     L     Q + L  Q  Q   L      + S + N Q +S 
Sbjct  364  LSQQQWLKQMSGITSPNSFRLQPSQRQALLLQQQQQQQQQLSSPQLHQSSMSLNQQQIS-  422

Query  553  QRSLQCMNLSHQNHQYMNLSHQNRQFMNLRRKRSQSPNHRFTNLRRSHQYMNLLRNH---  723
            Q   Q    S      MN SH  +Q   ++++  Q P  +    ++  Q M + +     
Sbjct  423  QIIQQQQQQSQLGQSQMNQSHSQQQLQQMQQQLQQQPQQQMQQQQQQQQQMQINQQQPSP  482

Query  724  RCMSH  738
            R +SH
Sbjct  483  RMLSH  487


>gi|9665128|gb|AAF97312.1|AC007843_15  Unknown protein [Arabidopsis thaliana]
Length=674

 Score = 42.4 bits (98),  Expect = 0.003
 Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 10/121 (8%)
 Frame = +1

Query  280  LSLQSHQFMSLSHQSHQYMNLSHQFMNLSHQSHQF-MSLQRSLRCMSLQRNHQYMNLSHQ  456
            L     Q + L  Q  Q   LS      S Q HQ  MSL +      +Q+  Q   L   
Sbjct  387  LQPSQRQALLLQQQQQQQQQLS------SPQLHQSSMSLNQQQISQIIQQQQQQSQLGQS  440

Query  457  SHQFMNLSHQSHQFMNLQRKRSQNPNHQYMSLQRSLQCMNLSHQNHQYMNLSHQNRQFMN  636
                MN SH   Q   +Q++  Q P  Q    Q+  Q M ++ Q      LSH  ++ ++
Sbjct  441  Q---MNQSHSQQQLQQMQQQLQQQPQQQMQQQQQQQQQMQINQQQPSPRMLSHAGQKSVS  497

Query  637  L  639
            L
Sbjct  498  L  498


 Score = 32.0 bits (71),  Expect = 3.9
 Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 8/125 (6%)
 Frame = +1

Query  385  MSLQRSLRCMSLQRNHQYMNLSHQSHQFMNLSHQSHQFMNLQ----RKRSQNPNHQYMSL  552
            +S Q+ L+ MS   +     L     Q + L  Q  Q   L      + S + N Q +S 
Sbjct  367  LSQQQWLKQMSGITSPNSFRLQPSQRQALLLQQQQQQQQQLSSPQLHQSSMSLNQQQIS-  425

Query  553  QRSLQCMNLSHQNHQYMNLSHQNRQFMNLRRKRSQSPNHRFTNLRRSHQYMNLLRNH---  723
            Q   Q    S      MN SH  +Q   ++++  Q P  +    ++  Q M + +     
Sbjct  426  QIIQQQQQQSQLGQSQMNQSHSQQQLQQMQQQLQQQPQQQMQQQQQQQQQMQINQQQPSP  485

Query  724  RCMSH  738
            R +SH
Sbjct  486  RMLSH  490


>gi|24461867|gb|AAN62354.1|AF506028_23  CTV.22 [Poncirus trifoliata]
Length=1405

 Score = 40.0 bits (92),  Expect = 0.014
 Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 8/121 (6%)
 Frame = +1

Query  358  NLSHQS--HQFMSLQRSLRCMSLQRNHQYMNLSHQSHQFMNLSHQSHQFMNLQRKRS-QN  528
            NL+ QS  +   S    L+  S    HQ++   HQ  Q +    QS Q   +Q++R  Q 
Sbjct  832  NLASQSGVNMLQSNINPLQSNSNMMQHQHLK-QHQEQQIL----QSQQLKQMQQQRQMQF  886

Query  529  PNHQYMSLQRSLQCMNLSHQNHQYMNLSHQNRQFMNLRRKRSQSPNHRFTNLRRSHQYMN  708
               Q M  Q+  Q     HQ  Q+    HQ +     ++  +Q P H+   L + +   +
Sbjct  887  QKQQLMQQQQQQQHQQQQHQQQQHQQQQHQQQHQQAKQQLPAQLPTHQMPQLNQMNDVND  946

Query  709  L  711
            L
Sbjct  947  L  947


 Score = 33.1 bits (74),  Expect = 1.7
 Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 9/96 (9%)
 Frame = +1

Query  286  LQSHQFMSLSHQSHQYMNLSHQFMNLSHQSHQFMSLQRSLRCMSLQRNHQYMNLSHQSHQ  465
            LQS+  M      HQ++    +   L  Q  + M  QR ++    Q   Q     HQ  Q
Sbjct  849  LQSNSNM----MQHQHLKQHQEQQILQSQQLKQMQQQRQMQFQKQQLMQQQQQQQHQQQQ  904

Query  466  FMNLSH--QSHQFMNLQRKR---SQNPNHQYMSLQR  558
                 H  Q HQ  + Q K+   +Q P HQ   L +
Sbjct  905  HQQQQHQQQQHQQQHQQAKQQLPAQLPTHQMPQLNQ  940


>gi|108706444|gb|ABF94239.1|  hypothetical protein LOC_Os03g07720 [Oryza sativa (japonica cultivar-group)]
Length=730

 Score = 39.7 bits (91),  Expect = 0.019
 Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
 Frame = +1

Query  418  LQRNH--QYMNLSHQS-HQFMNLSHQSH--QFMNLQRKRSQNPNH---QYMSLQRSLQCM  573
            LQ+NH  QY    HQ  ++  N  H  H  Q    Q+ +  N NH   QY   Q+  Q  
Sbjct  146  LQQNHHQQYQQHHHQQQYEHQNRIHFQHHRQQQQYQQHQHHNQNHHQQQYQQQQQQYQHQ  205

Query  574  NLSHQNHQYMNLSHQNRQFMNLRRKRSQ  657
            NL  Q  Q      Q  Q  NL++++ Q
Sbjct  206  NLQQQYQQQQQNLQQQYQHQNLQQQQQQ  233


 Score = 37.4 bits (85),  Expect = 0.092
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 0/82 (0%)
 Frame = +1

Query  421  QRNHQYMNLSHQSHQFMNLSHQSHQFMNLQRKRSQNPNHQYMSLQRSLQCMNLSHQNHQY  600
            Q+ +++ N  H  H      +Q HQ  N    + Q    Q     ++LQ      Q +  
Sbjct  160  QQQYEHQNRIHFQHHRQQQQYQQHQHHNQNHHQQQYQQQQQQYQHQNLQQQYQQQQQNLQ  219

Query  601  MNLSHQNRQFMNLRRKRSQSPN  666
                HQN Q    ++++ Q P+
Sbjct  220  QQYQHQNLQQQQQQQQQQQQPS  241


 Score = 35.0 bits (79),  Expect = 0.46
 Identities = 28/119 (23%), Positives = 40/119 (33%), Gaps = 20/119 (16%)
 Frame = +1

Query  205  PNHQFMNLPRNHRCMSLQRNRQ----FMNLSLQSHQFMSLSHQSHQYMNLSHQFMNLSHQ  372
            P      L +NH     Q + Q      N     H      +Q HQ+ N +H       Q
Sbjct  139  PGEDSFPLQQNHHQQYQQHHHQQQYEHQNRIHFQHHRQQQQYQQHQHHNQNHHQQQYQQQ  198

Query  373  SHQFMSLQRSLRCMSLQRNHQYMNLSHQSHQFMNLSHQSHQFMNLQRKRSQNPNHQYMS  549
                            Q+ +Q+ NL  Q  Q      Q +Q  NLQ+++ Q    Q  S
Sbjct  199  ----------------QQQYQHQNLQQQYQQQQQNLQQQYQHQNLQQQQQQQQQQQQPS  241


 Score = 31.6 bits (70),  Expect = 5.0
 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 9/91 (9%)
 Frame = +1

Query  310  LSHQSHQYMNLSHQFMNLSHQSHQFMSLQRSLRCMSLQRNHQYMNLSHQSHQFMNLSHQS  489
            L    HQ     H      HQ+       R        + HQ+ N +H   Q+     Q 
Sbjct  146  LQQNHHQQYQQHHHQQQYEHQNRIHFQHHRQ---QQQYQQHQHHNQNHHQQQYQQ-QQQQ  201

Query  490  HQFMNLQRKRSQNPN-----HQYMSLQRSLQ  567
            +Q  NLQ++  Q        +Q+ +LQ+  Q
Sbjct  202  YQHQNLQQQYQQQQQNLQQQYQHQNLQQQQQ  232


>gi|102139750|gb|ABF69957.1|  hypothetical protein MA4_25J11.28 [Musa acuminata]
Length=686

 Score = 39.3 bits (90),  Expect = 0.024
 Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 8/131 (6%)
 Frame = +1

Query  319  QSHQYMNLSHQFMNLSHQSHQFMSLQRSLRCMSLQRN--HQYMNLSHQSHQFMNLSHQSH  492
            Q   Y+    Q      QS Q    Q+    +S Q +   Q + L  Q  Q+  L+ Q  
Sbjct  464  QQLYYLQQQQQQQQQQQQSSQISQAQQPQESLSQQLSLQTQQLLLQLQQQQYQQLNQQEP  523

Query  493  QFMNLQRKRSQNPNHQYMSLQRSLQCMNLSHQNHQYMNLSHQNRQFMNLRRKRSQSPNHR  672
            Q  NL    +QN NHQ+   Q+     +L  QN Q  N + + +Q + L++++ Q   H+
Sbjct  524  Q-QNLS-SPTQNQNHQHQPQQKP---SHLQQQNEQ-ANQTQEQQQLLYLQQQQQQMYLHQ  577

Query  673  FTNLRRSHQYM  705
               L++  Q +
Sbjct  578  QLYLQQQQQLL  588


>gi|16305113|gb|AAL16979.1|  50kD gamma zein [Zea mays]
Length=295

 Score = 39.3 bits (90),  Expect = 0.024
 Identities = 41/197 (20%), Positives = 73/197 (37%), Gaps = 19/197 (9%)
 Frame = +1

Query  199  QNPNHQFMNLPRNHRCMSLQRNRQFMNLSLQSHQFMSL-----SHQSHQYMNLSHQFMNL  363
            Q  +H+  + P+ H     Q      +   Q HQ   +      HQ  Q +++  Q    
Sbjct  29   QQQSHEQQHHPQQHHPQKQQHQPPPQHHQQQQHQQQQVHMQPQKHQQQQEVHVQQQQQQP  88

Query  364  SHQSHQFMSL-QRSLRCMSLQRNHQYMNLSHQSHQFMNLSH--QSHQFMNLQRKRSQNPN  534
             HQ  Q     Q+  +C   Q++HQ      Q H+  +  H  QSH+  + Q+ +  +  
Sbjct  89   QHQQQQQQQQHQQQHQCEGQQQHHQQSQGHVQQHEQSHEQHQGQSHEQQHQQQFQGHDKQ  148

Query  535  HQYMSLQRSLQCMNLSHQNHQYMNLSHQNRQFMNLRRKRSQSPNHRFTNLRRSHQYMNLL  714
             Q    Q+  Q    S Q   +     Q         + S +     +NL+  H+++   
Sbjct  149  QQPQQPQQYQQGQEKSQQQQCHCQEQQQT-------TRCSYNYYSSSSNLKNCHEFL---  198

Query  715  RNHRCMSHLMVTIQDTL  765
               +C   +M  +Q  L
Sbjct  199  -RQQCSPLVMPFLQSRL  214


 Score = 32.3 bits (72),  Expect = 3.0
 Identities = 53/229 (23%), Positives = 83/229 (36%), Gaps = 32/229 (13%)
 Frame = +1

Query  49   PR*SHPQFTNH------HQFTNLQRSQNPNPLSMNPQrrrsrspshrFTNLQRRKSQNPN  210
            P+  HPQ   H      HQ    Q+ Q    + M PQ+ + +   H     Q+ + Q   
Sbjct  39   PQQHHPQKQQHQPPPQHHQQQQHQQQQ----VHMQPQKHQQQQEVHVQQQQQQPQHQQQQ  94

Query  211  HQFMNLPRNHRCMSLQRNRQFMNLSLQSH-----QFMSLSH-QSHQYMNLSHQFMNLSHQ  372
             Q  +  + H+C   Q++ Q     +Q H     Q    SH Q HQ     H       Q
Sbjct  95   QQQQH-QQQHQCEGQQQHHQQSQGHVQQHEQSHEQHQGQSHEQQHQQQFQGHDKQQQPQQ  153

Query  373  SHQFM-----SLQRSLRCMSLQRNHQYMNLSHQSHQFMNLSHQSHQFMNLQRKRSQNPNH  537
              Q+      S Q+   C   Q   Q    S+  +   +     H+F+  Q      P  
Sbjct  154  PQQYQQGQEKSQQQQCHC---QEQQQTTRCSYNYYSSSSNLKNCHEFLRQQCSPLVMPFL  210

Query  538  QYMSLQRS----LQ---CMNLSHQNHQYMNLSHQNRQFMNLRRKRSQSP  663
            Q   +Q S    LQ   C +L     QY++ +  N     ++ ++ Q P
Sbjct  211  QSRLIQPSSCQVLQQQCCHDLRQIEPQYIHQAIYNMVQSIIQEEQQQQP  259


>gi|115478458|ref|NP_001062824.1|  Os09g0306700 [Oryza sativa (japonica cultivar-group)]
 gi|51091708|dbj|BAD36509.1|  putative SMA-9 class B [Oryza sativa (japonica cultivar-group)]
 gi|113631057|dbj|BAF24738.1|  Os09g0306700 [Oryza sativa (japonica cultivar-group)]
Length=842

 Score = 39.3 bits (90),  Expect = 0.024
 Identities = 38/138 (27%), Positives = 52/138 (37%), Gaps = 17/138 (12%)
 Frame = +1

Query  226  LPRNHRCMSLQRNRQFMNLSLQSHQFMSLSHQSHQYMNLSHQFMNLSHQSHQFMSLQRSL  405
            +P     M  Q+ +Q  N   Q +Q     HQ HQ      Q  N   Q HQ   LQ+ L
Sbjct  650  VPTQQPPMQQQQLQQQQNQLQQQNQL----HQQHQL-----QPQNQLQQQHQ---LQQQL  697

Query  406  RCMSLQRNHQYMNLSHQSHQFMNLSHQSH--QFMNLQRKRSQNPNHQYMSLQRSLQCMNL  579
            +   LQ   Q+M L  Q         Q H  Q   +Q+ + Q    Q   +Q+  Q   +
Sbjct  698  QQQQLQ---QHMQLQTQGLPLQQQQSQGHPLQQQQMQQMQQQQQQQQIQQMQQQQQMQQM  754

Query  580  SHQNHQYMNLSHQNRQFM  633
              Q  Q   L  Q +  M
Sbjct  755  QQQQQQPQQLQQQQQPQM  772


 Score = 33.1 bits (74),  Expect = 1.7
 Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
 Frame = +1

Query  421  QRNHQYMNLSHQSHQF--MNLSHQSHQFMNLQRKRSQNPNHQYMSLQRSLQCMNLSHQNH  594
            Q   Q  N  HQ HQ    N   Q HQ   LQ++  Q    Q+M LQ   Q + L  Q  
Sbjct  666  QNQLQQQNQLHQQHQLQPQNQLQQQHQ---LQQQLQQQQLQQHMQLQ--TQGLPLQQQQS  720

Query  595  QYMNLSHQNRQFMNLRRKRSQ  657
            Q   L  Q  Q M  ++++ Q
Sbjct  721  QGHPLQQQQMQQMQQQQQQQQ  741


 Score = 30.8 bits (68),  Expect = 8.6
 Identities = 29/117 (24%), Positives = 44/117 (37%), Gaps = 15/117 (12%)
 Frame = +1

Query  181  LQRRKSQNPNHQFMNLPRNHRCMSLQRNRQFMNLSLQSHQFMSLSHQSH--QYMNLSHQF  354
            +Q+++ Q   +Q     + H+   LQ   Q      Q HQ      Q    Q+M L  Q 
Sbjct  657  MQQQQLQQQQNQLQQQNQLHQQHQLQPQNQLQ----QQHQLQQQLQQQQLQQHMQLQTQG  712

Query  355  MNLSHQSHQFMSLQRSLRCMSLQRNHQYMNLSHQSHQFMNLSHQSHQFMNLQRKRSQ  525
            + L  Q  Q   LQ        Q+  Q M    Q  Q   +  Q  Q   +Q+++ Q
Sbjct  713  LPLQQQQSQGHPLQ--------QQQMQQMQQQQQQQQIQQMQQQQ-QMQQMQQQQQQ  760


>gi|4104929|gb|AAD02218.1|  auxin response factor 7 [Arabidopsis thaliana]
Length=1164

 Score = 38.1 bits (87),  Expect = 0.054
 Identities = 46/170 (27%), Positives = 71/170 (41%), Gaps = 12/170 (7%)
 Frame = +1

Query  250  SLQRNRQFMNLSL-QSHQFMSLSHQSHQYMNLSHQFMNLSHQSHQFMSLQRSLRCMSLQR  426
            +LQ N+Q     + Q  Q  +   Q  Q   L H  +N  HQ  Q  S Q+  +   LQ+
Sbjct  477  NLQFNKQNQQAPMSQLPQPPTTLSQQQQLQQLLHSSLN--HQQQQSQSQQQQQQQQLLQQ  534

Query  427  NHQYMNLSHQSHQFMNLSHQSHQFMNLQRKRSQNPNHQYMS-LQRSLQCMNLSHQNHQYM  603
              Q   L  Q H   N S    Q   LQ+++ Q    Q+   LQ+  Q   L  Q  Q  
Sbjct  535  QQQ---LQSQQHSNNNQSQSQQQQQLLQQQQQQQLQQQHQQPLQQQTQQQQLRTQPLQ--  589

Query  604  NLSH-QNRQFMNLRRKRSQSPNHRFTNLRRSHQYMNLLR--NHRCMSHLM  744
            + SH Q +Q    + ++ Q P ++  N +++ Q     +   H    HL+
Sbjct  590  SHSHPQPQQLQQHKLQQLQVPQNQLYNGQQAAQQHQAQQASTHHLQPHLV  639


 Score = 34.3 bits (77),  Expect = 0.78
 Identities = 49/234 (20%), Positives = 79/234 (33%), Gaps = 18/234 (7%)
 Frame = +1

Query  58   SHPQFTNHHQFTNL-QRSQNPNPLSMNPQrrrsrspshrFTNLQRRKSQNPNHQFMNLPR  234
            S+ QF   +Q   + Q  Q P  LS   Q             LQ+    + NHQ      
Sbjct  476  SNLQFNKQNQQAPMSQLPQPPTTLSQQQQ-------------LQQLLHSSLNHQQQQSQS  522

Query  235  NHRCMSLQRNRQFMNLSLQSHQFMSLSHQSHQYMNLSHQFMNLSHQSH----QFMSLQRS  402
              +    Q  +Q   L  Q H   + S    Q   L  Q      Q H    Q  + Q+ 
Sbjct  523  QQQQQQQQLLQQQQQLQSQQHSNNNQSQSQQQQQLLQQQQQQQLQQQHQQPLQQQTQQQQ  582

Query  403  LRCMSLQRNHQYMNLSHQSHQFMNLSHQSHQFMNLQRKRSQNPNHQYMSLQRSLQCMNLS  582
            LR   LQ +        Q H+   L    +Q  N Q+   Q+   Q  +       ++ S
Sbjct  583  LRTQPLQSHSHPQPQQLQQHKLQQLQVPQNQLYNGQQAAQQHQAQQASTHHLQPHLVSGS  642

Query  583  HQNHQYMNLSHQNRQFMNLRRKRSQSPNHRFTNLRRSHQYMNLLRNHRCMSHLM  744
              +      S    Q    ++++S+       +L  S    +++   +  S+LM
Sbjct  643  MASSVITPPSSSLNQSFQQQQQQSKQLQQAHHHLGASTSQSSVIETSKSSSNLM  696


 Score = 33.5 bits (75),  Expect = 1.3
 Identities = 33/153 (21%), Positives = 56/153 (36%), Gaps = 13/153 (8%)
 Frame = +1

Query  229  PRNHRCMSLQRNRQFMNLSLQSHQFMSLSHQSHQYMNLSHQFMNLSHQSHQFMSLQRSLR  408
            P +    S Q+ +Q      Q+H  +  S      +  S    NL     Q     R + 
Sbjct  651  PSSSLNQSFQQQQQQSKQLQQAHHHLGASTSQSSVIETSKSSSNLMSAPPQETQFSRQVE  710

Query  409  CMSLQRNHQYMNLSHQSHQFMNLSHQSHQFMNLQRKRSQNPNHQYMSLQRSLQCMNLSHQ  588
                Q+    +N  +Q       +HQ+      Q+   + P+ Q+  LQR  Q      Q
Sbjct  711  ----QQQPPGLNGQNQQTLLQQKAHQAQAQQIFQQSLLEQPHIQFQLLQRLQQ-----QQ  761

Query  589  NHQYMN----LSHQNRQFMNLRRKRSQSPNHRF  675
              Q+++    L H   Q   L++  + S  H+F
Sbjct  762  QQQFLSPQSQLPHHQLQSQQLQQLPTLSQGHQF  794


>gi|115477875|ref|NP_001062533.1|  Os08g0564800 [Oryza sativa (japonica cultivar-group)]
 gi|42409072|dbj|BAD10323.1|  putative CTV.22 [Oryza sativa (japonica cultivar-group)]
 gi|45735914|dbj|BAD12946.1|  putative CTV.22 [Oryza sativa (japonica cultivar-group)]
 gi|113624502|dbj|BAF24447.1|  Os08g0564800 [Oryza sativa (japonica cultivar-group)]
Length=1320

 Score = 38.1 bits (87),  Expect = 0.054
 Identities = 48/178 (26%), Positives = 69/178 (38%), Gaps = 32/178 (17%)
 Frame = +1

Query  103  RSQNPNPLSMNPQrrrsrspshrFTNLQRRKSQNPNHQFMNLPRNHRCMSLQRNRQFMNL  282
            R Q  +  SM+PQ              Q + +Q PN     +P  H+ M  Q+N Q   L
Sbjct  312  RQQQHSQSSMHPQPSLQ----------QAQPTQQPN-----IPLQHQLMGQQQNLQQNQL  356

Query  283  SLQSH------QFMSLSHQSHQYMNLSHQFMNLSHQ---SHQFMSLQRSLRCMSLQRNHQ  435
              Q +      Q   L  QS+  +N+      L+ Q   SHQ   L       +LQ+  Q
Sbjct  357  IGQQNGAVDMPQQQRLPVQSNNLLNMQQTQQMLNQQSMPSHQQQQLGSQANISTLQQQQQ  416

Query  436  YMNLSHQSHQFM----NLSHQSHQFMNLQRKRSQNPNHQYMSLQRSLQCMNLSHQNHQ  597
                + Q  Q +    N+ +     M LQ K  Q P  Q  + Q SL  M    Q++Q
Sbjct  417  Q---NQQQQQLLGTVPNVPNIQRMHM-LQTKAVQQPQQQQHAQQSSLGLMQPQSQHNQ  470


>gi|30689268|ref|NP_173925.3|  PFT1 (PHYTOCHROME AND FLOWERING TIME 1) [Arabidopsis thaliana]
 gi|32478899|gb|AAO39425.1|  phytochrome and flowering time 1 protein [Arabidopsis thaliana]
Length=836

 Score = 37.7 bits (86),  Expect = 0.070
 Identities = 25/100 (25%), Positives = 36/100 (36%), Gaps = 4/100 (4%)
 Frame = +1

Query  340  LSHQFMNLSHQSHQFMSLQRSLRCMSLQRNH----QYMNLSHQSHQFMNLSHQSHQFMNL  507
            + +Q      Q HQ    Q+ ++    Q+ H    Q   L  Q  Q      Q HQ   L
Sbjct  678  IPNQQQQQQQQLHQQQQQQQQIQQQQQQQQHLQQQQMPQLQQQQQQHQQQQQQQHQLSQL  737

Query  508  QRKRSQNPNHQYMSLQRSLQCMNLSHQNHQYMNLSHQNRQ  627
            Q  + Q    Q    Q  L  +   HQ  Q  +  +Q +Q
Sbjct  738  QHHQQQQQQQQQQQQQHQLTQLQHHHQQQQQASPLNQMQQ  777


 Score = 37.7 bits (86),  Expect = 0.070
 Identities = 32/127 (25%), Positives = 45/127 (35%), Gaps = 10/127 (7%)
 Frame = +1

Query  256  QRNRQFMNLSLQSHQFMSLSHQSHQYMNLSHQFMNLSHQSHQFMSLQRSLRCMSLQRNHQ  435
            Q+ +Q   L  Q  Q   +  Q  Q  +L  Q M    Q  Q    Q+       Q+ HQ
Sbjct  681  QQQQQQQQLHQQQQQQQQIQQQQQQQQHLQQQQMPQLQQQQQQHQQQQ-------QQQHQ  733

Query  436  YMNLSH--QSHQFMNLSHQSHQFMNLQRKRSQNPNHQYMS-LQRSLQCMNLSHQNHQYMN  606
               L H  Q  Q      Q HQ   LQ    Q      ++ +Q+    +N   Q    +N
Sbjct  734  LSQLQHHQQQQQQQQQQQQQHQLTQLQHHHQQQQQASPLNQMQQQTSPLNQMQQQTSPLN  793

Query  607  LSHQNRQ  627
               Q +Q
Sbjct  794  QMQQQQQ  800


 Score = 36.6 bits (83),  Expect = 0.16
 Identities = 28/117 (23%), Positives = 41/117 (35%), Gaps = 7/117 (5%)
 Frame = +1

Query  319  QSHQYMNLSHQFMNLSHQSHQFMSLQRSLRCMSLQRNHQYMNLSHQSHQFMNLSHQSHQF  498
            Q  Q      Q   +  Q  Q   LQ+       Q+  Q+     Q HQ   L H   Q 
Sbjct  685  QQQQLHQQQQQQQQIQQQQQQQQHLQQQQMPQLQQQQQQHQQQQQQQHQLSQLQHHQQQ-  743

Query  499  MNLQRKRSQNPNHQYMSL----QRSLQCMNLSHQNHQYMNLSHQNRQFMNLRRKRSQ  657
               Q+++ Q   HQ   L    Q+  Q   L+    Q   L+   +Q   L + + Q
Sbjct  744  --QQQQQQQQQQHQLTQLQHHHQQQQQASPLNQMQQQTSPLNQMQQQTSPLNQMQQQ  798


 Score = 35.4 bits (80),  Expect = 0.35
 Identities = 36/141 (25%), Positives = 48/141 (34%), Gaps = 15/141 (10%)
 Frame = +1

Query  193  KSQNPNHQFMNLPRNHRCMSLQRN---RQFMNLSLQSHQFMSLSHQSHQYMNLS---HQF  354
            K Q PN Q     + H+    Q+    +Q     LQ  Q   L  Q  Q+       HQ 
Sbjct  675  KPQIPNQQQQQQQQLHQQQQQQQQIQQQQQQQQHLQQQQMPQLQQQQQQHQQQQQQQHQL  734

Query  355  MNLSHQSHQFMSLQRSLRCMSLQRNHQYMNLSH---QSHQFMNLSHQSHQFMNLQRKRSQ  525
              L H   Q    Q+       Q+ HQ   L H   Q  Q   L+    Q   L + + Q
Sbjct  735  SQLQHHQQQQQQQQQQ------QQQHQLTQLQHHHQQQQQASPLNQMQQQTSPLNQMQQQ  788

Query  526  NPNHQYMSLQRSLQCMNLSHQ  588
                  M  Q+  Q M +  Q
Sbjct  789  TSPLNQMQQQQQPQQMVMGGQ  809


 Score = 34.7 bits (78),  Expect = 0.60
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 11/94 (11%)
 Frame = +1

Query  433  QYMNLSHQSHQFMNLSHQSHQFMNLQRKRSQNPNHQYMSLQRSLQCMNLSH-----QNHQ  597
            Q  N   Q  Q ++   Q  Q +  Q+++ Q+   Q M     LQ     H     Q HQ
Sbjct  677  QIPNQQQQQQQQLHQQQQQQQQIQQQQQQQQHLQQQQMP---QLQQQQQQHQQQQQQQHQ  733

Query  598  YMNLSHQNRQFMNLRRKRSQSPNHRFTNLRRSHQ  699
               L H  +Q    ++++ Q   H+ T L+  HQ
Sbjct  734  LSQLQHHQQQ---QQQQQQQQQQHQLTQLQHHHQ  764


 Score = 33.1 bits (74),  Expect = 1.7
 Identities = 32/140 (22%), Positives = 45/140 (32%), Gaps = 19/140 (13%)
 Frame = +1

Query  184  QRRKSQNPNHQFMNLPRNHRCMSLQRNRQFMNLSLQSHQFMSLSH-----QSHQYMNLSH  348
            Q+++ Q    Q  +L +       Q+ +Q      Q HQ   L H     Q  Q     H
Sbjct  695  QQQQIQQQQQQQQHLQQQQMPQLQQQQQQHQQQQQQQHQLSQLQHHQQQQQQQQQQQQQH  754

Query  349  QFMNLSHQSHQFMSLQRSLRCMSLQRNHQYMNLSHQSHQFMNLSHQSHQFMNLQRKRSQN  528
            Q   L H   Q             Q+    +N   Q    +N   Q    +N Q ++ Q 
Sbjct  755  QLTQLQHHHQQ-------------QQQASPLNQMQQQTSPLNQMQQQTSPLN-QMQQQQQ  800

Query  529  PNHQYMSLQRSLQCMNLSHQ  588
            P    M  Q   Q    S Q
Sbjct  801  PQQMVMGGQAFAQAPGRSQQ  820


>gi|19310546|gb|AAL85006.1|  unknown protein [Arabidopsis thaliana]
Length=1045

 Score = 37.7 bits (86),  Expect = 0.070
 Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 10/153 (6%)
 Frame = +1

Query  250  SLQRNRQFMNLSL-QSHQFMSLSHQSHQYMNLSHQFMNLSHQSHQFMSLQRSLRCMSLQR  426
            +LQ N+Q     + Q  Q  +   Q  Q   L H  +N  HQ  Q  S Q+  +   LQ+
Sbjct  358  NLQFNKQNQQAPMSQLPQPPTTLSQQQQLQQLLHSSLN--HQQQQSQSQQQQQQQQLLQQ  415

Query  427  NHQYMNLSHQSHQFMNLSHQSHQFMNLQRKRSQNPNHQYMS-LQRSLQCMNLSHQNHQYM  603
              Q   L  Q H   N S    Q   LQ+++ Q    Q+   LQ+  Q   L  Q  Q  
Sbjct  416  QQQ---LQSQQHSNNNQSQSQQQQQLLQQQQQQQLQQQHQQPLQQQTQQQQLRTQPLQ--  470

Query  604  NLSH-QNRQFMNLRRKRSQSPNHRFTNLRRSHQ  699
            + SH Q +Q    + ++ Q P ++  N +++ Q
Sbjct  471  SHSHPQPQQLQQHKLQQLQVPQNQLYNGQQAAQ  503


 Score = 37.4 bits (85),  Expect = 0.092
 Identities = 50/234 (21%), Positives = 81/234 (34%), Gaps = 18/234 (7%)
 Frame = +1

Query  58   SHPQFTNHHQFTNL-QRSQNPNPLSMNPQrrrsrspshrFTNLQRRKSQNPNHQFMNLPR  234
            S+ QF   +Q   + Q  Q P  LS   Q             LQ+    + NHQ      
Sbjct  357  SNLQFNKQNQQAPMSQLPQPPTTLSQQQQ-------------LQQLLHSSLNHQQQQSQS  403

Query  235  NHRCMSLQRNRQFMNLSLQSHQFMSLSHQSHQYMNLSHQFMNLSHQSH----QFMSLQRS  402
              +    Q  +Q   L  Q H   + S    Q   L  Q      Q H    Q  + Q+ 
Sbjct  404  QQQQQQQQLLQQQQQLQSQQHSNNNQSQSQQQQQLLQQQQQQQLQQQHQQPLQQQTQQQQ  463

Query  403  LRCMSLQRNHQYMNLSHQSHQFMNLSHQSHQFMNLQRKRSQNPNHQYMSLQRSLQCMNLS  582
            LR   LQ +        Q H+   L    +Q  N Q+   Q+ + Q  +     Q ++ S
Sbjct  464  LRTQPLQSHSHPQPQQLQQHKLQQLQVPQNQLYNGQQAAQQHQSQQASTHHLQPQLVSGS  523

Query  583  HQNHQYMNLSHQNRQFMNLRRKRSQSPNHRFTNLRRSHQYMNLLRNHRCMSHLM  744
              +      S    Q    ++++S+       +L  S    +++   +  S+LM
Sbjct  524  MASSVITPPSSSLNQSFQQQQQQSKQLQQAHHHLGASTSQSSVIETSKSSSNLM  577


 Score = 33.5 bits (75),  Expect = 1.3
 Identities = 33/153 (21%), Positives = 56/153 (36%), Gaps = 13/153 (8%)
 Frame = +1

Query  229  PRNHRCMSLQRNRQFMNLSLQSHQFMSLSHQSHQYMNLSHQFMNLSHQSHQFMSLQRSLR  408
            P +    S Q+ +Q      Q+H  +  S      +  S    NL     Q     R + 
Sbjct  532  PSSSLNQSFQQQQQQSKQLQQAHHHLGASTSQSSVIETSKSSSNLMSAPPQETQFSRQVE  591

Query  409  CMSLQRNHQYMNLSHQSHQFMNLSHQSHQFMNLQRKRSQNPNHQYMSLQRSLQCMNLSHQ  588
                Q+    +N  +Q       +HQ+      Q+   + P+ Q+  LQR  Q      Q
Sbjct  592  ----QQQPPGLNGQNQQTLLQQKAHQAQAQQIFQQSLLEQPHIQFQLLQRLQQ-----QQ  642

Query  589  NHQYMN----LSHQNRQFMNLRRKRSQSPNHRF  675
              Q+++    L H   Q   L++  + S  H+F
Sbjct  643  QQQFLSPQSQLPHHQLQSQQLQQLPTLSQGHQF  675


>gi|12321507|gb|AAG50810.1|AC079281_12  hypothetical protein [Arabidopsis thaliana]
Length=534

 Score = 37.7 bits (86),  Expect = 0.070
 Identities = 25/100 (25%), Positives = 36/100 (36%), Gaps = 4/100 (4%)
 Frame = +1

Query  340  LSHQFMNLSHQSHQFMSLQRSLRCMSLQRNH----QYMNLSHQSHQFMNLSHQSHQFMNL  507
            + +Q      Q HQ    Q+ ++    Q+ H    Q   L  Q  Q      Q HQ   L
Sbjct  376  IPNQQQQQQQQLHQQQQQQQQIQQQQQQQQHLQQQQMPQLQQQQQQHQQQQQQQHQLSQL  435

Query  508  QRKRSQNPNHQYMSLQRSLQCMNLSHQNHQYMNLSHQNRQ  627
            Q  + Q    Q    Q  L  +   HQ  Q  +  +Q +Q
Sbjct  436  QHHQQQQQQQQQQQQQHQLTQLQHHHQQQQQASPLNQMQQ  475


 Score = 37.7 bits (86),  Expect = 0.070
 Identities = 32/127 (25%), Positives = 45/127 (35%), Gaps = 10/127 (7%)
 Frame = +1

Query  256  QRNRQFMNLSLQSHQFMSLSHQSHQYMNLSHQFMNLSHQSHQFMSLQRSLRCMSLQRNHQ  435
            Q+ +Q   L  Q  Q   +  Q  Q  +L  Q M    Q  Q    Q+       Q+ HQ
Sbjct  379  QQQQQQQQLHQQQQQQQQIQQQQQQQQHLQQQQMPQLQQQQQQHQQQQ-------QQQHQ  431

Query  436  YMNLSH--QSHQFMNLSHQSHQFMNLQRKRSQNPNHQYMS-LQRSLQCMNLSHQNHQYMN  606
               L H  Q  Q      Q HQ   LQ    Q      ++ +Q+    +N   Q    +N
Sbjct  432  LSQLQHHQQQQQQQQQQQQQHQLTQLQHHHQQQQQASPLNQMQQQTSPLNQMQQQTSPLN  491

Query  607  LSHQNRQ  627
               Q +Q
Sbjct  492  QMQQQQQ  498


 Score = 36.6 bits (83),  Expect = 0.16
 Identities = 28/117 (23%), Positives = 41/117 (35%), Gaps = 7/117 (5%)
 Frame = +1

Query  319  QSHQYMNLSHQFMNLSHQSHQFMSLQRSLRCMSLQRNHQYMNLSHQSHQFMNLSHQSHQF  498
            Q  Q      Q   +  Q  Q   LQ+       Q+  Q+     Q HQ   L H   Q 
Sbjct  383  QQQQLHQQQQQQQQIQQQQQQQQHLQQQQMPQLQQQQQQHQQQQQQQHQLSQLQHHQQQ-  441

Query  499  MNLQRKRSQNPNHQYMSL----QRSLQCMNLSHQNHQYMNLSHQNRQFMNLRRKRSQ  657
               Q+++ Q   HQ   L    Q+  Q   L+    Q   L+   +Q   L + + Q
Sbjct  442  --QQQQQQQQQQHQLTQLQHHHQQQQQASPLNQMQQQTSPLNQMQQQTSPLNQMQQQ  496


 Score = 35.4 bits (80),  Expect = 0.35
 Identities = 36/141 (25%), Positives = 48/141 (34%), Gaps = 15/141 (10%)
 Frame = +1

Query  193  KSQNPNHQFMNLPRNHRCMSLQRN---RQFMNLSLQSHQFMSLSHQSHQYMNLS---HQF  354
            K Q PN Q     + H+    Q+    +Q     LQ  Q   L  Q  Q+       HQ 
Sbjct  373  KPQIPNQQQQQQQQLHQQQQQQQQIQQQQQQQQHLQQQQMPQLQQQQQQHQQQQQQQHQL  432

Query  355  MNLSHQSHQFMSLQRSLRCMSLQRNHQYMNLSH---QSHQFMNLSHQSHQFMNLQRKRSQ  525
              L H   Q    Q+       Q+ HQ   L H   Q  Q   L+    Q   L + + Q
Sbjct  433  SQLQHHQQQQQQQQQQ------QQQHQLTQLQHHHQQQQQASPLNQMQQQTSPLNQMQQQ  486

Query  526  NPNHQYMSLQRSLQCMNLSHQ  588
                  M  Q+  Q M +  Q
Sbjct  487  TSPLNQMQQQQQPQQMVMGGQ  507


 Score = 34.7 bits (78),  Expect = 0.60
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 11/94 (11%)
 Frame = +1

Query  433  QYMNLSHQSHQFMNLSHQSHQFMNLQRKRSQNPNHQYMSLQRSLQCMNLSH-----QNHQ  597
            Q  N   Q  Q ++   Q  Q +  Q+++ Q+   Q M     LQ     H     Q HQ
Sbjct  375  QIPNQQQQQQQQLHQQQQQQQQIQQQQQQQQHLQQQQMP---QLQQQQQQHQQQQQQQHQ  431

Query  598  YMNLSHQNRQFMNLRRKRSQSPNHRFTNLRRSHQ  699
               L H  +Q    ++++ Q   H+ T L+  HQ
Sbjct  432  LSQLQHHQQQ---QQQQQQQQQQHQLTQLQHHHQ  462


 Score = 33.1 bits (74),  Expect = 1.7
 Identities = 32/140 (22%), Positives = 45/140 (32%), Gaps = 19/140 (13%)
 Frame = +1

Query  184  QRRKSQNPNHQFMNLPRNHRCMSLQRNRQFMNLSLQSHQFMSLSH-----QSHQYMNLSH  348
            Q+++ Q    Q  +L +       Q+ +Q      Q HQ   L H     Q  Q     H
Sbjct  393  QQQQIQQQQQQQQHLQQQQMPQLQQQQQQHQQQQQQQHQLSQLQHHQQQQQQQQQQQQQH  452

Query  349  QFMNLSHQSHQFMSLQRSLRCMSLQRNHQYMNLSHQSHQFMNLSHQSHQFMNLQRKRSQN  528
            Q   L H   Q             Q+    +N   Q    +N   Q    +N Q ++ Q 
Sbjct  453  QLTQLQHHHQQ-------------QQQASPLNQMQQQTSPLNQMQQQTSPLN-QMQQQQQ  498

Query  529  PNHQYMSLQRSLQCMNLSHQ  588
            P    M  Q   Q    S Q
Sbjct  499  PQQMVMGGQAFAQAPGRSQQ  518


>gi|4103243|gb|AAD04807.1|  BIPOSTO [Arabidopsis thaliana]
Length=1165

 Score = 37.7 bits (86),  Expect = 0.070
 Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 10/153 (6%)
 Frame = +1

Query  250  SLQRNRQFMNLSL-QSHQFMSLSHQSHQYMNLSHQFMNLSHQSHQFMSLQRSLRCMSLQR  426
            +LQ N+Q     + Q  Q  +   Q  Q   L H  +N  HQ  Q  S Q+  +   LQ+
Sbjct  478  NLQFNKQNQQAPMSQLPQPPTTLSQQQQLQQLLHSSLN--HQQQQSQSQQQQQQQQLLQQ  535

Query  427  NHQYMNLSHQSHQFMNLSHQSHQFMNLQRKRSQNPNHQYMS-LQRSLQCMNLSHQNHQYM  603
              Q   L  Q H   N S    Q   LQ+++ Q    Q+   LQ+  Q   L  Q  Q  
Sbjct  536  QQQ---LQSQQHSNNNQSQSQQQQQLLQQQQQQQLQQQHQQPLQQQTQQQQLRTQPLQ--  590

Query  604  NLSH-QNRQFMNLRRKRSQSPNHRFTNLRRSHQ  699
            + SH Q +Q    + ++ Q P ++  N +++ Q
Sbjct  591  SHSHPQPQQLQQHKLQQLQVPQNQLYNGQQAAQ  623


 Score = 37.4 bits (85),  Expect = 0.092
 Identities = 50/234 (21%), Positives = 81/234 (34%), Gaps = 18/234 (7%)
 Frame = +1

Query  58   SHPQFTNHHQFTNL-QRSQNPNPLSMNPQrrrsrspshrFTNLQRRKSQNPNHQFMNLPR  234
            S+ QF   +Q   + Q  Q P  LS   Q             LQ+    + NHQ      
Sbjct  477  SNLQFNKQNQQAPMSQLPQPPTTLSQQQQ-------------LQQLLHSSLNHQQQQSQS  523

Query  235  NHRCMSLQRNRQFMNLSLQSHQFMSLSHQSHQYMNLSHQFMNLSHQSH----QFMSLQRS  402
              +    Q  +Q   L  Q H   + S    Q   L  Q      Q H    Q  + Q+ 
Sbjct  524  QQQQQQQQLLQQQQQLQSQQHSNNNQSQSQQQQQLLQQQQQQQLQQQHQQPLQQQTQQQQ  583

Query  403  LRCMSLQRNHQYMNLSHQSHQFMNLSHQSHQFMNLQRKRSQNPNHQYMSLQRSLQCMNLS  582
            LR   LQ +        Q H+   L    +Q  N Q+   Q+ + Q  +     Q ++ S
Sbjct  584  LRTQPLQSHSHPQPQQLQQHKLQQLQVPQNQLYNGQQAAQQHQSQQASTHHLQPQLVSGS  643

Query  583  HQNHQYMNLSHQNRQFMNLRRKRSQSPNHRFTNLRRSHQYMNLLRNHRCMSHLM  744
              +      S    Q    ++++S+       +L  S    +++   +  S+LM
Sbjct  644  MASSVITPPSSSLNQSFQQQQQQSKQLQQAHHHLGASTSQSSVIETSKSSSNLM  697


 Score = 33.5 bits (75),  Expect = 1.3
 Identities = 33/153 (21%), Positives = 56/153 (36%), Gaps = 13/153 (8%)
 Frame = +1

Query  229  PRNHRCMSLQRNRQFMNLSLQSHQFMSLSHQSHQYMNLSHQFMNLSHQSHQFMSLQRSLR  408
            P +    S Q+ +Q      Q+H  +  S      +  S    NL     Q     R + 
Sbjct  652  PSSSLNQSFQQQQQQSKQLQQAHHHLGASTSQSSVIETSKSSSNLMSAPPQETQFSRQVE  711

Query  409  CMSLQRNHQYMNLSHQSHQFMNLSHQSHQFMNLQRKRSQNPNHQYMSLQRSLQCMNLSHQ  588
                Q+    +N  +Q       +HQ+      Q+   + P+ Q+  LQR  Q      Q
Sbjct  712  ----QQQPPGLNGQNQQTLLQQKAHQAQAQQIFQQSLLEQPHIQFQLLQRLQQ-----QQ  762

Query  589  NHQYMN----LSHQNRQFMNLRRKRSQSPNHRF  675
              Q+++    L H   Q   L++  + S  H+F
Sbjct  763  QQQFLSPQSQLPHHQLQSQQLQQLPTLSQGHQF  795


>gi|30687957|ref|NP_568400.2|  NPH4 (NON-PHOTOTROPHIC HYPOCOTYL); transcription factor [Arabidopsis 
thaliana]
Length=1150

 Score = 37.7 bits (86),  Expect = 0.070
 Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 10/153 (6%)
 Frame = +1

Query  250  SLQRNRQFMNLSL-QSHQFMSLSHQSHQYMNLSHQFMNLSHQSHQFMSLQRSLRCMSLQR  426
            +LQ N+Q     + Q  Q  +   Q  Q   L H  +N  HQ  Q  S Q+  +   LQ+
Sbjct  478  NLQFNKQNQQAPMSQLPQPPTTLSQQQQLQQLLHSSLN--HQQQQSQSQQQQQQQQLLQQ  535

Query  427  NHQYMNLSHQSHQFMNLSHQSHQFMNLQRKRSQNPNHQYMS-LQRSLQCMNLSHQNHQYM  603
              Q   L  Q H   N S    Q   LQ+++ Q    Q+   LQ+  Q   L  Q  Q  
Sbjct  536  QQQ---LQSQQHSNNNQSQSQQQQQLLQQQQQQQLQQQHQQPLQQQTQQQQLRTQPLQ--  590

Query  604  NLSH-QNRQFMNLRRKRSQSPNHRFTNLRRSHQ  699
            + SH Q +Q    + ++ Q P ++  N +++ Q
Sbjct  591  SHSHPQPQQLQQHKLQQLQVPQNQLYNGQQAAQ  623


 Score = 37.4 bits (85),  Expect = 0.092
 Identities = 50/234 (21%), Positives = 81/234 (34%), Gaps = 18/234 (7%)
 Frame = +1

Query  58   SHPQFTNHHQFTNL-QRSQNPNPLSMNPQrrrsrspshrFTNLQRRKSQNPNHQFMNLPR  234
            S+ QF   +Q   + Q  Q P  LS   Q             LQ+    + NHQ      
Sbjct  477  SNLQFNKQNQQAPMSQLPQPPTTLSQQQQ-------------LQQLLHSSLNHQQQQSQS  523

Query  235  NHRCMSLQRNRQFMNLSLQSHQFMSLSHQSHQYMNLSHQFMNLSHQSH----QFMSLQRS  402
              +    Q  +Q   L  Q H   + S    Q   L  Q      Q H    Q  + Q+ 
Sbjct  524  QQQQQQQQLLQQQQQLQSQQHSNNNQSQSQQQQQLLQQQQQQQLQQQHQQPLQQQTQQQQ  583

Query  403  LRCMSLQRNHQYMNLSHQSHQFMNLSHQSHQFMNLQRKRSQNPNHQYMSLQRSLQCMNLS  582
            LR   LQ +        Q H+   L    +Q  N Q+   Q+ + Q  +     Q ++ S
Sbjct  584  LRTQPLQSHSHPQPQQLQQHKLQQLQVPQNQLYNGQQAAQQHQSQQASTHHLQPQLVSGS  643

Query  583  HQNHQYMNLSHQNRQFMNLRRKRSQSPNHRFTNLRRSHQYMNLLRNHRCMSHLM  744
              +      S    Q    ++++S+       +L  S    +++   +  S+LM
Sbjct  644  MASSVITPPSSSLNQSFQQQQQQSKQLQQAHHHLGASTSQSSVIETSKSSSNLM  697


 Score = 33.5 bits (75),  Expect = 1.3
 Identities = 33/153 (21%), Positives = 56/153 (36%), Gaps = 13/153 (8%)
 Frame = +1

Query  229  PRNHRCMSLQRNRQFMNLSLQSHQFMSLSHQSHQYMNLSHQFMNLSHQSHQFMSLQRSLR  408
            P +    S Q+ +Q      Q+H  +  S      +  S    NL     Q     R + 
Sbjct  652  PSSSLNQSFQQQQQQSKQLQQAHHHLGASTSQSSVIETSKSSSNLMSAPPQETQFSRQVE  711

Query  409  CMSLQRNHQYMNLSHQSHQFMNLSHQSHQFMNLQRKRSQNPNHQYMSLQRSLQCMNLSHQ  588
                Q+    +N  +Q       +HQ+      Q+   + P+ Q+  LQR  Q      Q
Sbjct  712  ----QQQPPGLNGQNQQTLLQQKAHQAQAQQIFQQSLLEQPHIQFQLLQRLQQ-----QQ  762

Query  589  NHQYMN----LSHQNRQFMNLRRKRSQSPNHRF  675
              Q+++    L H   Q   L++  + S  H+F
Sbjct  763  QQQFLSPQSQLPHHQLQSQQLQQLPTLSQGHQF  795


>gi|30687943|ref|NP_851046.1|  NPH4 (NON-PHOTOTROPHIC HYPOCOTYL); transcription factor [Arabidopsis 
thaliana]
 gi|8071650|gb|AAF71831.1|AF186466_1  non-phototropic hypocotyl 4 [Arabidopsis thaliana]
Length=1165

 Score = 37.7 bits (86),  Expect = 0.070
 Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 10/153 (6%)
 Frame = +1

Query  250  SLQRNRQFMNLSL-QSHQFMSLSHQSHQYMNLSHQFMNLSHQSHQFMSLQRSLRCMSLQR  426
            +LQ N+Q     + Q  Q  +   Q  Q   L H  +N  HQ  Q  S Q+  +   LQ+
Sbjct  478  NLQFNKQNQQAPMSQLPQPPTTLSQQQQLQQLLHSSLN--HQQQQSQSQQQQQQQQLLQQ  535

Query  427  NHQYMNLSHQSHQFMNLSHQSHQFMNLQRKRSQNPNHQYMS-LQRSLQCMNLSHQNHQYM  603
              Q   L  Q H   N S    Q   LQ+++ Q    Q+   LQ+  Q   L  Q  Q  
Sbjct  536  QQQ---LQSQQHSNNNQSQSQQQQQLLQQQQQQQLQQQHQQPLQQQTQQQQLRTQPLQ--  590

Query  604  NLSH-QNRQFMNLRRKRSQSPNHRFTNLRRSHQ  699
            + SH Q +Q    + ++ Q P ++  N +++ Q
Sbjct  591  SHSHPQPQQLQQHKLQQLQVPQNQLYNGQQAAQ  623


 Score = 37.4 bits (85),  Expect = 0.092
 Identities = 50/234 (21%), Positives = 81/234 (34%), Gaps = 18/234 (7%)
 Frame = +1

Query  58   SHPQFTNHHQFTNL-QRSQNPNPLSMNPQrrrsrspshrFTNLQRRKSQNPNHQFMNLPR  234
            S+ QF   +Q   + Q  Q P  LS   Q             LQ+    + NHQ      
Sbjct  477  SNLQFNKQNQQAPMSQLPQPPTTLSQQQQ-------------LQQLLHSSLNHQQQQSQS  523

Query  235  NHRCMSLQRNRQFMNLSLQSHQFMSLSHQSHQYMNLSHQFMNLSHQSH----QFMSLQRS  402
              +    Q  +Q   L  Q H   + S    Q   L  Q      Q H    Q  + Q+ 
Sbjct  524  QQQQQQQQLLQQQQQLQSQQHSNNNQSQSQQQQQLLQQQQQQQLQQQHQQPLQQQTQQQQ  583

Query  403  LRCMSLQRNHQYMNLSHQSHQFMNLSHQSHQFMNLQRKRSQNPNHQYMSLQRSLQCMNLS  582
            LR   LQ +        Q H+   L    +Q  N Q+   Q+ + Q  +     Q ++ S
Sbjct  584  LRTQPLQSHSHPQPQQLQQHKLQQLQVPQNQLYNGQQAAQQHQSQQASTHHLQPQLVSGS  643

Query  583  HQNHQYMNLSHQNRQFMNLRRKRSQSPNHRFTNLRRSHQYMNLLRNHRCMSHLM  744
              +      S    Q    ++++S+       +L  S    +++   +  S+LM
Sbjct  644  MASSVITPPSSSLNQSFQQQQQQSKQLQQAHHHLGASTSQSSVIETSKSSSNLM  697


 Score = 33.5 bits (75),  Expect = 1.3
 Identities = 33/153 (21%), Positives = 56/153 (36%), Gaps = 13/153 (8%)
 Frame = +1

Query  229  PRNHRCMSLQRNRQFMNLSLQSHQFMSLSHQSHQYMNLSHQFMNLSHQSHQFMSLQRSLR  408
            P +    S Q+ +Q      Q+H  +  S      +  S    NL     Q     R + 
Sbjct  652  PSSSLNQSFQQQQQQSKQLQQAHHHLGASTSQSSVIETSKSSSNLMSAPPQETQFSRQVE  711

Query  409  CMSLQRNHQYMNLSHQSHQFMNLSHQSHQFMNLQRKRSQNPNHQYMSLQRSLQCMNLSHQ  588
                Q+    +N  +Q       +HQ+      Q+   + P+ Q+  LQR  Q      Q
Sbjct  712  ----QQQPPGLNGQNQQTLLQQKAHQAQAQQIFQQSLLEQPHIQFQLLQRLQQ-----QQ  762

Query  589  NHQYMN----LSHQNRQFMNLRRKRSQSPNHRF  675
              Q+++    L H   Q   L++  + S  H+F
Sbjct  763  QQQFLSPQSQLPHHQLQSQQLQQLPTLSQGHQF  795


>gi|30687949|ref|NP_851047.1|  NPH4 (NON-PHOTOTROPHIC HYPOCOTYL); transcription factor [Arabidopsis 
thaliana]
 gi|46576377|sp|P93022|ARFG_ARATH  Auxin response factor 7 (Non-phototropic hypocotyl 4) (Protein 
BIPOSTO) (Auxin-responsive protein IAA21/IAA23/IAA25)
 gi|37540157|gb|AAG35177.1|  ARF7 [Arabidopsis thaliana]
 gi|49616353|gb|AAT67073.1|  ARF7 [Arabidopsis thaliana]
Length=1164

 Score = 37.7 bits (86),  Expect = 0.070
 Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 10/153 (6%)
 Frame = +1

Query  250  SLQRNRQFMNLSL-QSHQFMSLSHQSHQYMNLSHQFMNLSHQSHQFMSLQRSLRCMSLQR  426
            +LQ N+Q     + Q  Q  +   Q  Q   L H  +N  HQ  Q  S Q+  +   LQ+
Sbjct  477  NLQFNKQNQQAPMSQLPQPPTTLSQQQQLQQLLHSSLN--HQQQQSQSQQQQQQQQLLQQ  534

Query  427  NHQYMNLSHQSHQFMNLSHQSHQFMNLQRKRSQNPNHQYMS-LQRSLQCMNLSHQNHQYM  603
              Q   L  Q H   N S    Q   LQ+++ Q    Q+   LQ+  Q   L  Q  Q  
Sbjct  535  QQQ---LQSQQHSNNNQSQSQQQQQLLQQQQQQQLQQQHQQPLQQQTQQQQLRTQPLQ--  589

Query  604  NLSH-QNRQFMNLRRKRSQSPNHRFTNLRRSHQ  699
            + SH Q +Q    + ++ Q P ++  N +++ Q
Sbjct  590  SHSHPQPQQLQQHKLQQLQVPQNQLYNGQQAAQ  622


 Score = 37.4 bits (85),  Expect = 0.092
 Identities = 50/234 (21%), Positives = 81/234 (34%), Gaps = 18/234 (7%)
 Frame = +1

Query  58   SHPQFTNHHQFTNL-QRSQNPNPLSMNPQrrrsrspshrFTNLQRRKSQNPNHQFMNLPR  234
            S+ QF   +Q   + Q  Q P  LS   Q             LQ+    + NHQ      
Sbjct  476  SNLQFNKQNQQAPMSQLPQPPTTLSQQQQ-------------LQQLLHSSLNHQQQQSQS  522

Query  235  NHRCMSLQRNRQFMNLSLQSHQFMSLSHQSHQYMNLSHQFMNLSHQSH----QFMSLQRS  402
              +    Q  +Q   L  Q H   + S    Q   L  Q      Q H    Q  + Q+ 
Sbjct  523  QQQQQQQQLLQQQQQLQSQQHSNNNQSQSQQQQQLLQQQQQQQLQQQHQQPLQQQTQQQQ  582

Query  403  LRCMSLQRNHQYMNLSHQSHQFMNLSHQSHQFMNLQRKRSQNPNHQYMSLQRSLQCMNLS  582
            LR   LQ +        Q H+   L    +Q  N Q+   Q+ + Q  +     Q ++ S
Sbjct  583  LRTQPLQSHSHPQPQQLQQHKLQQLQVPQNQLYNGQQAAQQHQSQQASTHHLQPQLVSGS  642

Query  583  HQNHQYMNLSHQNRQFMNLRRKRSQSPNHRFTNLRRSHQYMNLLRNHRCMSHLM  744
              +      S    Q    ++++S+       +L  S    +++   +  S+LM
Sbjct  643  MASSVITPPSSSLNQSFQQQQQQSKQLQQAHHHLGASTSQSSVIETSKSSSNLM  696


 Score = 33.5 bits (75),  Expect = 1.3
 Identities = 33/153 (21%), Positives = 56/153 (36%), Gaps = 13/153 (8%)
 Frame = +1

Query  229  PRNHRCMSLQRNRQFMNLSLQSHQFMSLSHQSHQYMNLSHQFMNLSHQSHQFMSLQRSLR  408
            P +    S Q+ +Q      Q+H  +  S      +  S    NL     Q     R + 
Sbjct  651  PSSSLNQSFQQQQQQSKQLQQAHHHLGASTSQSSVIETSKSSSNLMSAPPQETQFSRQVE  710

Query  409  CMSLQRNHQYMNLSHQSHQFMNLSHQSHQFMNLQRKRSQNPNHQYMSLQRSLQCMNLSHQ  588
                Q+    +N  +Q       +HQ+      Q+   + P+ Q+  LQR  Q      Q
Sbjct  711  ----QQQPPGLNGQNQQTLLQQKAHQAQAQQIFQQSLLEQPHIQFQLLQRLQQ-----QQ  761

Query  589  NHQYMN----LSHQNRQFMNLRRKRSQSPNHRF  675
              Q+++    L H   Q   L++  + S  H+F
Sbjct  762  QQQFLSPQSQLPHHQLQSQQLQQLPTLSQGHQF  794


>gi|92875390|gb|ABE83383.1|  RNA-binding region RNP-1 (RNA recognition motif) [Medicago truncatula]
Length=454

 Score = 36.6 bits (83),  Expect = 0.16
 Identities = 40/162 (24%), Positives = 55/162 (33%), Gaps = 36/162 (22%)
 Frame = +1

Query  256  QRNRQFMNLSLQSHQFMSLSHQSHQYMNLSHQFMNLSHQSHQFMSLQRSLRCMSLQRNHQ  435
            Q   Q  N   Q  Q      Q HQY               Q+MS+Q     M++ +   
Sbjct  12   QNQNQNQNQHQQQQQQQWAQQQPHQYQQ-------------QWMSMQYPATAMAMMQQQM  58

Query  436  YMNLSHQSHQFMNLSHQSHQFMNLQRKRSQNPNHQYMSLQRSLQCMNLSHQNHQYMNLSH  615
             M   H    +M   H  H        + Q P+ Q +S   S    +  HQ HQY    H
Sbjct  59   MMYPQH----YMPYVHPHHY-------QQQPPHQQQVSPPPSAHSHHGGHQQHQYQ--QH  105

Query  616  QNRQFMNLRRKRSQSPNH-RFTNLRRSHQYMNLLRNHRCMSH  738
            Q +Q          +P   R   L   H +M+    H C +H
Sbjct  106  QQKQL---------APEEIRTIWLGDLHHWMDETFLHNCFAH  138


>gi|110739910|dbj|BAF01860.1|  hypothetical protein [Arabidopsis thaliana]
Length=1081

 Score = 35.8 bits (81),  Expect = 0.27
 Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 17/182 (9%)
 Frame = +1

Query  235  NHRCMSLQRNRQF-MNLSLQ---SHQFMSLSHQSHQYMNLSHQFMNLSHQSHQFMS---L  393
            ++R +  +RN Q   N+SL    S++     H S+++ NL  Q  +  H   QF +   L
Sbjct  297  DNRPIDSRRNTQVDPNMSLDGLASNRMSQFEHLSNRF-NLGDQLSSNQHNQQQFQNRDML  355

Query  394  QRSLRCMSLQRNHQYMNLSHQSHQFMNLSHQSHQFMNLQRKRSQNPNHQYMSLQRSLQCM  573
              S      Q     + L  Q  Q + L  Q  +    Q+++ Q    Q M LQ+    +
Sbjct  356  SHSHIGDQAQDLDYLITLQLQQQQKIQLQQQQ-KIQLQQQQKIQLQQQQKMQLQQHQ--L  412

Query  574  NLSHQNHQYMNLSHQN---RQFMNLRRKRSQSPNHRF---TNLRRSHQYMNLLRNHRCMS  735
               HQ HQ +    Q    RQ    +  + Q+P+ RF    +  RS+    +L  H+ M+
Sbjct  413  EQEHQLHQKLLQEQQQSHARQLHYQQILQGQTPDSRFGQSHDFPRSNNVDQMLLEHQLMN  472

Query  736  HL  741
             L
Sbjct  473  EL  474


>gi|15221723|ref|NP_173840.1|  unknown protein [Arabidopsis thaliana]
 gi|2829883|gb|AAC00591.1|  Unknown protein [Arabidopsis thaliana]
Length=1417

 Score = 35.8 bits (81),  Expect = 0.27
 Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 17/182 (9%)
 Frame = +1

Query  235  NHRCMSLQRNRQF-MNLSLQ---SHQFMSLSHQSHQYMNLSHQFMNLSHQSHQFMS---L  393
            ++R +  +RN Q   N+SL    S++     H S+++ NL  Q  +  H   QF +   L
Sbjct  633  DNRPIDSRRNTQVDPNMSLDGLASNRMSQFEHLSNRF-NLGDQLSSNQHNQQQFQNRDML  691

Query  394  QRSLRCMSLQRNHQYMNLSHQSHQFMNLSHQSHQFMNLQRKRSQNPNHQYMSLQRSLQCM  573
              S      Q     + L  Q  Q + L  Q  +    Q+++ Q    Q M LQ+    +
Sbjct  692  SHSHIGDQAQDLDYLITLQLQQQQKIQLQQQQ-KIQLQQQQKIQLQQQQKMQLQQHQ--L  748

Query  574  NLSHQNHQYMNLSHQN---RQFMNLRRKRSQSPNHRF---TNLRRSHQYMNLLRNHRCMS  735
               HQ HQ +    Q    RQ    +  + Q+P+ RF    +  RS+    +L  H+ M+
Sbjct  749  EQEHQLHQKLLQEQQQSHARQLHYQQILQGQTPDSRFGQSHDFPRSNNVDQMLLEHQLMN  808

Query  736  HL  741
             L
Sbjct  809  EL  810


>gi|15238073|ref|NP_198957.1|  BEL1 (BELL 1); DNA binding / transcription factor [Arabidopsis 
thaliana]
 gi|9758050|dbj|BAB08513.1|  homeotic protein BEL1 homolog [Arabidopsis thaliana]
 gi|15146193|gb|AAK83580.1|  AT5g41410/MYC6_12 [Arabidopsis thaliana]
 gi|27363268|gb|AAO11553.1|  At5g41410/MYC6_12 [Arabidopsis thaliana]
 gi|28202125|gb|AAB05099.2|  homeobox protein [Arabidopsis thaliana]
Length=611

 Score = 35.8 bits (81),  Expect = 0.27
 Identities = 44/173 (25%), Positives = 70/173 (40%), Gaps = 19/173 (10%)
 Frame = +1

Query  196  SQNP------NHQFMNLPRNHRCMSLQRNRQFMNLSLQS-----HQFMSLSHQSHQYMNL  342
            +QNP      NHQ      N   M     +Q + ++  S     H   S     +Q +  
Sbjct  32   NQNPTDHHHYNHQIFGSNSNMGMMIDFSKQQQIRMTSGSDHHHHHHQTSGGTDQNQLLED  91

Query  343  SHQFMNLSHQSHQFMSLQRSLRCMSLQRNHQYMNLSHQSHQFMNLSHQSHQFMNLQRKR-  519
            S   M L + ++ F S     R    QR  Q ++LS  S    ++S QS +    Q+++ 
Sbjct  92   SSSAMRLCNVNNDFPSEVNDER--PPQRPSQGLSLSLSSSNPTSISLQSFELRPQQQQQQ  149

Query  520  --SQNPNHQYMSLQRS---LQCMNLSHQNHQYMNLSHQNRQFMNLRRKRSQSP  663
              S N + Q+ +LQ +   +  MN  HQN+   N  H N     +   +  SP
Sbjct  150  GYSGNKSTQHQNLQHTQMMMMMMNSHHQNNNNNNHQHHNHHQFQIGSSKYLSP  202


>gi|115444555|ref|NP_001046057.1|  Os02g0175700 [Oryza sativa (japonica cultivar-group)]
 gi|50251206|dbj|BAD27613.1|  synaptosomal-associated protein 91-like [Oryza sativa (japonica 
cultivar-group)]
 gi|113535588|dbj|BAF07971.1|  Os02g0175700 [Oryza sativa (japonica cultivar-group)]
Length=583

 Score = 35.4 bits (80),  Expect = 0.35
 Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 9/69 (13%)
 Frame = +1

Query  262  NRQFMNLSLQSHQFMSLSHQSHQYMNLSHQFMNLSHQSHQFMSLQRSLRCMSLQRNHQYM  441
            N QF  L+ Q HQ+    HQ   Y    H F +  HQ H  M  Q        Q+N  Y 
Sbjct  489  NVQFAMLNQQQHQYYQSQHQQQYYQ--PHHFQD--HQHHHNMYFQ-----THYQQNQIYQ  539

Query  442  NLSHQSHQF  468
                Q HQ+
Sbjct  540  QQQQQQHQY  548


>gi|8927657|gb|AAF82148.1|AC034256_12  EST gb|N38213 comes from this gene. [Arabidopsis thaliana]
Length=1366

 Score = 35.0 bits (79),  Expect = 0.46
 Identities = 46/181 (25%), Positives = 68/181 (37%), Gaps = 22/181 (12%)
 Frame = +1

Query  178  NLQRRKSQNP------NHQFMNLPRNHRCMSLQRNRQFMNLSLQSHQFMSLSHQSHQYMN  339
            N+Q+++SQ          Q    P   + MS Q + Q  + +    Q      Q  Q   
Sbjct  431  NIQQQQSQQQPLQQPQQQQKQQPPAQQQLMSQQNSLQATHQNPLGTQSNVAGLQQPQQQM  490

Query  340  LSHQFMNLSHQSHQFMSLQRSLRCMSLQRNHQ-----YMNLSHQS------HQFMNLSHQ  486
            L+ Q  N S Q++Q      S   + LQR HQ     Y +   QS       Q M     
Sbjct  491  LNSQVGNSSLQNNQHSVHMLSQPTVGLQRTHQAGHGLYSSQGQQSQNQPSQQQMMPQLQS  550

Query  487  SHQFMNLQRKRSQNPNHQYMSLQRSLQCM-NLSHQNHQYMNLSHQNRQFMNLRRKRSQSP  663
             HQ + LQ    Q PN     +Q+ LQ    ++       N+  Q RQ    +R   + P
Sbjct  551  HHQQLGLQ----QQPNLLQQDVQQRLQASGQVTGSLLPPQNVVDQQRQLYQSQRTLPEMP  606

Query  664  N  666
            +
Sbjct  607  S  607


>gi|22325475|ref|NP_178539.2|  cation transporter/ efflux permease [Arabidopsis thaliana]
Length=798

 Score = 35.0 bits (79),  Expect = 0.46
 Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
 Frame = +1

Query  307  SLSHQSHQYMNLSHQFMNLSHQSHQFMSLQRSLRCMSLQRNHQYMNLSHQSHQFMNLSHQ  486
            S SHQSH + N  H   + SH+  +               +HQ+ + SH+  +     H 
Sbjct  557  SHSHQSHSHKNEEHHQHSDSHKHEE---------------HHQHSD-SHKHEEHHEHDHH  600

Query  487  SHQFMNLQRKRSQNPNHQYMSLQRSLQCMNLSHQNH  594
             H   +   + + N +H++ S   + +  N +H +H
Sbjct  601  HHSHSHKHEECNHNHDHEHQSHSHNHEECNHNHDHH  636


 Score = 30.8 bits (68),  Expect = 8.6
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
 Frame = +1

Query  289  QSHQFMSLSHQSHQYMNLSHQFMNLSHQSHQFMSLQRSLRCMSLQRNHQYMNLSHQSHQF  468
            + H   S SH+  ++   S    +  H  H       S +      NH + + SH SH  
Sbjct  568  EEHHQHSDSHKHEEHHQHSDSHKHEEHHEHDHHHHSHSHKHEECNHNHDHEHQSH-SHNH  626

Query  469  MNLSHQSHQFMNLQRKRSQNPNHQYM  546
               +H      + Q ++S+   H+++
Sbjct  627  EECNHNHDHHSDHQPEKSEKKEHRHI  652


>gi|15218294|ref|NP_173030.1|  unknown protein [Arabidopsis thaliana]
Length=1335

 Score = 35.0 bits (79),  Expect = 0.46
 Identities = 46/181 (25%), Positives = 68/181 (37%), Gaps = 22/181 (12%)
 Frame = +1

Query  178  NLQRRKSQNP------NHQFMNLPRNHRCMSLQRNRQFMNLSLQSHQFMSLSHQSHQYMN  339
            N+Q+++SQ          Q    P   + MS Q + Q  + +    Q      Q  Q   
Sbjct  400  NIQQQQSQQQPLQQPQQQQKQQPPAQQQLMSQQNSLQATHQNPLGTQSNVAGLQQPQQQM  459

Query  340  LSHQFMNLSHQSHQFMSLQRSLRCMSLQRNHQ-----YMNLSHQS------HQFMNLSHQ  486
            L+ Q  N S Q++Q      S   + LQR HQ     Y +   QS       Q M     
Sbjct  460  LNSQVGNSSLQNNQHSVHMLSQPTVGLQRTHQAGHGLYSSQGQQSQNQPSQQQMMPQLQS  519

Query  487  SHQFMNLQRKRSQNPNHQYMSLQRSLQCM-NLSHQNHQYMNLSHQNRQFMNLRRKRSQSP  663
             HQ + LQ    Q PN     +Q+ LQ    ++       N+  Q RQ    +R   + P
Sbjct  520  HHQQLGLQ----QQPNLLQQDVQQRLQASGQVTGSLLPPQNVVDQQRQLYQSQRTLPEMP  575

Query  664  N  666
            +
Sbjct  576  S  576


>gi|50261759|gb|AAT72460.1|  FCA gamma protein [Lolium perenne]
Length=668

 Score = 34.7 bits (78),  Expect = 0.60
 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 0/77 (0%)
 Frame = +1

Query  436  YMNLSHQSHQFMNLSHQSHQFMNLQRKRSQNPNHQYMSLQRSLQCMNLSHQNHQYMNLSH  615
            Y     Q  Q   +  Q HQ   + ++    P  Q +   +S+Q    SHQ H  M + H
Sbjct  576  YEQQQQQQQQQKLILLQQHQQKLVAQQLQSPPRAQAIQCMQSIQQHPQSHQGHNQMQMKH  635

Query  616  QNRQFMNLRRKRSQSPN  666
            Q   +  L+   +  PN
Sbjct  636  QELNYNQLQATGNIDPN  652


 Score = 32.0 bits (71),  Expect = 3.9
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
 Frame = +1

Query  319  QSHQYMNLSHQFMNLSHQSHQFMSLQRSLRCM-SLQRNHQYMNLSHQSHQFMNLSHQSHQ  495
            Q  + + L      L  Q  Q     ++++CM S+Q++ Q    SHQ H  M + HQ   
Sbjct  584  QQQKLILLQQHQQKLVAQQLQSPPRAQAIQCMQSIQQHPQ----SHQGHNQMQMKHQELN  639

Query  496  FMNLQRKRSQNPNHQYMSLQ  555
            +  LQ   + +PN     +Q
Sbjct  640  YNQLQATGNIDPNRIQQGIQ  659


>gi|8954059|gb|AAF82232.1|AC069143_8  Contains similarity to a non-phototropic hypocotyl 4 (NPH4) protein 
from Arabidopsis thaliana gb|AF186466
Length=1062

 Score = 33.9 bits (76),  Expect = 1.0
 Identities = 43/202 (21%), Positives = 71/202 (35%), Gaps = 17/202 (8%)
 Frame = +1

Query  184  QRRKSQNPNHQFMNLPRNHRCMSLQRNRQFMNL------------SLQS-HQFMSLSHQS  324
            Q+++ Q   HQ   L +  +    Q+  Q   +            S QS +Q    S   
Sbjct  474  QQQQQQQHQHQQQQLQQQQQLQMSQQQVQQQGIYNNGTIAVANQVSCQSPNQPTGFSQSQ  533

Query  325  HQYMNLSHQFMNLSHQSHQFMSLQRSLRCMSLQRNHQYMNL--SHQSHQFMNLSHQSHQF  498
             Q  ++      ++HQ+   M  +   +  S  +  Q+      H S Q +    +    
Sbjct  534  LQQQSMLPTGAKMTHQNINSMGNKGLSQMTSFAQEMQFQQQLEMHNSSQLLRNQQEQSSL  593

Query  499  MNLQRKRSQNPNHQYMSLQRSLQCMNLSHQNHQYMNLSHQNRQFMNLRRKRSQSPNHRFT  678
             +LQ+  SQNP    M  Q S    +   Q      L  Q +Q        S  P     
Sbjct  594  HSLQQNLSQNPQQLQMQQQSSKPSPSQQLQLQLLQKLQQQQQQQSIPPVSSSLQPQLSAL  653

Query  679  NLRRSHQYMNLL--RNHRCMSH  738
               +SHQ   LL  +N + ++H
Sbjct  654  QQTQSHQLQQLLSSQNQQPLAH  675


>gi|15221978|ref|NP_173356.1|  ARF19; transcription factor [Arabidopsis thaliana]
 gi|46576613|sp|Q8RYC8|ARFS_ARATH  Auxin response factor 19 (Auxin-responsive protein IAA22)
 gi|37540154|gb|AAG35176.1|  ARF11/IAA22 [Arabidopsis thaliana]
 gi|49616363|gb|AAT67078.1|  ARF19 [Arabidopsis thaliana]
 gi|56961712|gb|AAB91321.2|  early auxin-induced IAA22 [Arabidopsis thaliana]
Length=1086

 Score = 33.9 bits (76),  Expect = 1.0
 Identities = 43/202 (21%), Positives = 71/202 (35%), Gaps = 17/202 (8%)
 Frame = +1

Query  184  QRRKSQNPNHQFMNLPRNHRCMSLQRNRQFMNL------------SLQS-HQFMSLSHQS  324
            Q+++ Q   HQ   L +  +    Q+  Q   +            S QS +Q    S   
Sbjct  498  QQQQQQQHQHQQQQLQQQQQLQMSQQQVQQQGIYNNGTIAVANQVSCQSPNQPTGFSQSQ  557

Query  325  HQYMNLSHQFMNLSHQSHQFMSLQRSLRCMSLQRNHQYMNL--SHQSHQFMNLSHQSHQF  498
             Q  ++      ++HQ+   M  +   +  S  +  Q+      H S Q +    +    
Sbjct  558  LQQQSMLPTGAKMTHQNINSMGNKGLSQMTSFAQEMQFQQQLEMHNSSQLLRNQQEQSSL  617

Query  499  MNLQRKRSQNPNHQYMSLQRSLQCMNLSHQNHQYMNLSHQNRQFMNLRRKRSQSPNHRFT  678
             +LQ+  SQNP    M  Q S    +   Q      L  Q +Q        S  P     
Sbjct  618  HSLQQNLSQNPQQLQMQQQSSKPSPSQQLQLQLLQKLQQQQQQQSIPPVSSSLQPQLSAL  677

Query  679  NLRRSHQYMNLL--RNHRCMSH  738
               +SHQ   LL  +N + ++H
Sbjct  678  QQTQSHQLQQLLSSQNQQPLAH  699


>gi|110740489|dbj|BAE98350.1|  auxin response factor 7 [Arabidopsis thaliana]
Length=416

 Score = 33.5 bits (75),  Expect = 1.3
 Identities = 33/153 (21%), Positives = 56/153 (36%), Gaps = 13/153 (8%)
 Frame = +1

Query  229  PRNHRCMSLQRNRQFMNLSLQSHQFMSLSHQSHQYMNLSHQFMNLSHQSHQFMSLQRSLR  408
            P +    S Q+ +Q      Q+H  +  S      +  S    NL     Q     R + 
Sbjct  101  PSSSLNQSFQQQQQQSKQLQQAHHHLGASTSQSSVIETSKSSSNLMSAPPQETQFSRQVE  160

Query  409  CMSLQRNHQYMNLSHQSHQFMNLSHQSHQFMNLQRKRSQNPNHQYMSLQRSLQCMNLSHQ  588
                Q+    +N  +Q       +HQ+      Q+   + P+ Q+  LQR  Q      Q
Sbjct  161  ----QQQPPGLNGQNQQTLLQQKAHQAQAQQIFQQSLLEQPHIQFQLLQRLQQ-----QQ  211

Query  589  NHQYMN----LSHQNRQFMNLRRKRSQSPNHRF  675
              Q+++    L H   Q   L++  + S  H+F
Sbjct  212  QQQFLSPQSQLPHHQLQSQQLQQLPTLSQGHQF  244


>gi|15450866|gb|AAK96704.1|  homeotic protein BEL1 homolog [Arabidopsis thaliana]
Length=513

 Score = 33.5 bits (75),  Expect = 1.3
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
 Frame = +1

Query  421  QRNHQYMNLSHQSHQFMNLSHQSHQFMNLQRKR---SQNPNHQYMSLQRS---LQCMNLS  582
            QR  Q ++LS  S    ++S QS +    Q+++   S N + Q+ +LQ +   +  MN  
Sbjct  116  QRPSQGLSLSLSSSNPTSISLQSFELRPQQQQQQGYSGNKSTQHQNLQHTQMMMMMMNSH  175

Query  583  HQNHQYMNLSHQNRQFMNLRRKRSQSP  663
            HQN+   N  H N     +   +  SP
Sbjct  176  HQNNNNNNHQHHNHHQFQIGSSKYLSP  202


>gi|18449948|gb|AAL70114.1|AC099733_5  Putative polyprotein [Oryza sativa]
 gi|18642695|gb|AAL76187.1|AC074283_17  Putative polyprotein [Oryza sativa]
 gi|31430086|gb|AAP52050.1|  retrotransposon protein, putative, unclassified [Oryza sativa 
(japonica cultivar-group)]
Length=382

 Score = 33.5 bits (75),  Expect = 1.3
 Identities = 23/129 (17%), Positives = 55/129 (42%), Gaps = 0/129 (0%)
 Frame = +1

Query  280  LSLQSHQFMSLSHQSHQYMNLSHQFMNLSHQSHQFMSLQRSLRCMSLQRNHQYMNLSHQS  459
            ++L+  +F +L  + H      H+F  L+  + + +   +  +   L+     +++   S
Sbjct  145  VTLKKREFRTLKQKDHTVTEYLHEFNRLARYALEDVRTDKERQEKFLEGLKDELSVKLIS  204

Query  460  HQFMNLSHQSHQFMNLQRKRSQNPNHQYMSLQRSLQCMNLSHQNHQYMNLSHQNRQFMNL  639
            H + +      + + L+ K+++  N Q  S Q ++ C   S  N        Q  Q + +
Sbjct  205  HDYSDFQQLVDKAIRLEDKKNRMDNRQGQSQQLNISCEINSETNASNEVNIEQATQSVPV  264

Query  640  RRKRSQSPN  666
            ++ + Q  N
Sbjct  265  QQNQPQEDN  273


>gi|79318949|ref|NP_001031115.1|  ARF6 (AUXIN RESPONSE FACTOR 6) [Arabidopsis thaliana]
 gi|49616351|gb|AAT67072.1|  ARF6 [Arabidopsis thaliana]
Length=935

 Score = 33.1 bits (74),  Expect = 1.7
 Identities = 36/145 (24%), Positives = 59/145 (40%), Gaps = 22/145 (15%)
 Frame = +1

Query  349  QFMNLSHQSHQFMSLQRSLRCMSLQRNHQYMNLSHQSHQFMNLSHQSHQFMNLQRKRSQN  528
            QF N    S Q  SL +  + +  Q + Q   LS Q  Q   LS Q  Q ++ Q+++  +
Sbjct  464  QFQNSPGFSMQSPSLVQP-QMLQQQLSQQQQQLSQQQQQQQQLSQQQQQQLSQQQQQQLS  522

Query  529  PNHQYMSLQRSLQCMNLSHQNHQYMNL--SHQNRQFMNLRRKRSQSPNHRFTNLRRSHQY  702
               Q        Q ++   Q   Y+ +  +HQ +      + +SQS NH       S Q 
Sbjct  523  QQQQ--------QQLSQQQQQQAYLGVPETHQPQS-----QAQSQSNNHL------SQQQ  563

Query  703  MNLLRNHRCMSHLMVTIQDTLQWGS  777
              ++ NH   +     +    Q+GS
Sbjct  564  QQVVDNHNPSASSAAVVSAMSQFGS  588


>gi|38346482|emb|CAE03721.2|  OSJNBa0021F22.15 [Oryza sativa (japonica cultivar-group)]
Length=711

 Score = 33.1 bits (74),  Expect = 1.7
 Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 18/112 (16%)
 Frame = +1

Query  184  QRRKSQNPNHQFMNLPRNHRCMSLQRNRQFMNLSLQSHQFMSLSHQSHQYMNLSHQFMNL  363
            Q+R+ Q P    ++ PR  R  S          S + HQF  L  +S+   N S   ++ 
Sbjct  197  QQRQRQRP--YLLHKPRRQRSSSR---------SSRHHQFSRLYGRSN---NRSCSQLSR  242

Query  364  SHQSHQFMSLQRSLRCMSLQRNHQYMNLSHQSHQFMNLSHQSHQFMNLQRKR  519
             HQ  +  S   +  C  L ++HQ  ++S+QS    N   Q + F    R R
Sbjct  243  HHQFSRLYSRSSNRSCSQLSKHHQRSSISNQS----NKHRQGNGFSRSNRLR  290


>gi|15220728|ref|NP_174323.1|  ARF6 (AUXIN RESPONSE FACTOR 6); transcription factor [Arabidopsis 
thaliana]
 gi|46396059|sp|Q9ZTX8|ARFF_ARATH  Auxin response factor 6
 gi|12322119|gb|AAG51093.1|AC025295_1  auxin response factor 6 (ARF6) [Arabidopsis thaliana]
 gi|4102600|gb|AAD01513.1|  ARF6 [Arabidopsis thaliana]
Length=933

 Score = 33.1 bits (74),  Expect = 1.7
 Identities = 36/145 (24%), Positives = 59/145 (40%), Gaps = 22/145 (15%)
 Frame = +1

Query  349  QFMNLSHQSHQFMSLQRSLRCMSLQRNHQYMNLSHQSHQFMNLSHQSHQFMNLQRKRSQN  528
            QF N    S Q  SL +  + +  Q + Q   LS Q  Q   LS Q  Q ++ Q+++  +
Sbjct  462  QFQNSPGFSMQSPSLVQP-QMLQQQLSQQQQQLSQQQQQQQQLSQQQQQQLSQQQQQQLS  520

Query  529  PNHQYMSLQRSLQCMNLSHQNHQYMNL--SHQNRQFMNLRRKRSQSPNHRFTNLRRSHQY  702
               Q        Q ++   Q   Y+ +  +HQ +      + +SQS NH       S Q 
Sbjct  521  QQQQ--------QQLSQQQQQQAYLGVPETHQPQS-----QAQSQSNNHL------SQQQ  561

Query  703  MNLLRNHRCMSHLMVTIQDTLQWGS  777
              ++ NH   +     +    Q+GS
Sbjct  562  QQVVDNHNPSASSAAVVSAMSQFGS  586


>gi|42570546|ref|NP_850888.2|  AGL34; DNA binding / transcription factor [Arabidopsis thaliana]
 gi|32402460|gb|AAN52812.1|  MADS-box protein AGL34 [Arabidopsis thaliana]
Length=345

 Score = 32.7 bits (73),  Expect = 2.3
 Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 19/103 (18%)
 Frame = +1

Query  70   FTNHHQFTNLQRSQNPNPLSMNPQrrrsrspshrFTNLQRRKSQNPNHQFMNLPRNHRCM  249
            F+NH Q+ N+  SQ+   L    Q     +    F N      QN N      P N    
Sbjct  213  FSNHIQYKNMNMSQD---LHRPFQHLVPTNFCDFFQN------QNMNQVQYQAPPNDMFN  263

Query  250  SLQRNRQFMNLSLQSHQFMSLSHQSHQYMNLSHQFMNLSHQSH  378
             +QR  +F N++L        + +S+QYMN    FMN   + H
Sbjct  264  QIQR--EFYNINL--------NQKSNQYMNQQQPFMNPMVEQH  296


 Score = 32.0 bits (71),  Expect = 3.9
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 19/79 (24%)
 Frame = +1

Query  448  SHQSHQFMNLSHQSHQ---------FMNLQRKRSQN-------PNHQYMSLQRSLQCMNL  579
            +H  ++ MN+S   H+         F +  + ++ N       PN  +  +QR    +NL
Sbjct  215  NHIQYKNMNMSQDLHRPFQHLVPTNFCDFFQNQNMNQVQYQAPPNDMFNQIQREFYNINL  274

Query  580  SHQNHQYMNLSHQNRQFMN  636
            + +++QYMN   Q + FMN
Sbjct  275  NQKSNQYMN---QQQPFMN  290


>gi|3047087|gb|AAC13600.1|  contains similarity to SRF-type transcription factor DNA-binding 
and dimerization domain (Pfam: transcript_fact.hmm, score 
63.38) [Arabidopsis thaliana]
Length=330

 Score = 32.7 bits (73),  Expect = 2.3
 Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 19/103 (18%)
 Frame = +1

Query  70   FTNHHQFTNLQRSQNPNPLSMNPQrrrsrspshrFTNLQRRKSQNPNHQFMNLPRNHRCM  249
            F+NH Q+ N+  SQ+   L    Q     +    F N      QN N      P N    
Sbjct  198  FSNHIQYKNMNMSQD---LHRPFQHLVPTNFCDFFQN------QNMNQVQYQAPPNDMFN  248

Query  250  SLQRNRQFMNLSLQSHQFMSLSHQSHQYMNLSHQFMNLSHQSH  378
             +QR  +F N++L        + +S+QYMN    FMN   + H
Sbjct  249  QIQR--EFYNINL--------NQKSNQYMNQQQPFMNPMVEQH  281


 Score = 32.0 bits (71),  Expect = 3.9
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 19/79 (24%)
 Frame = +1

Query  448  SHQSHQFMNLSHQSHQ---------FMNLQRKRSQN-------PNHQYMSLQRSLQCMNL  579
            +H  ++ MN+S   H+         F +  + ++ N       PN  +  +QR    +NL
Sbjct  200  NHIQYKNMNMSQDLHRPFQHLVPTNFCDFFQNQNMNQVQYQAPPNDMFNQIQREFYNINL  259

Query  580  SHQNHQYMNLSHQNRQFMN  636
            + +++QYMN   Q + FMN
Sbjct  260  NQKSNQYMN---QQQPFMN  275


>gi|9665099|gb|AAF97290.1|AC010164_12  Hypothetical protein [Arabidopsis thaliana]
Length=399

 Score = 32.7 bits (73),  Expect = 2.3
 Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 12/93 (12%)
 Frame = +1

Query  361  LSHQSHQFMSLQRSLRCMSLQRNHQYMNLSHQSHQFMNLSHQSHQFMNLQRKRSQNPNHQ  540
            + HQ H+ M          +Q   Q+  + HQ H  M    Q H+ +      S    HQ
Sbjct  188  VQHQQHRHM----------VQHQQQHRMVQHQQHHHMVQLQQHHRMVQTWLNNSNMVMHQ  237

Query  541  YMSLQRSLQCMNLSHQNHQYMNLSHQNRQFMNL  639
               L + +  ++++ Q+H  + + H ++Q   L
Sbjct  238  VRLLSKLI--LHIALQHHLMVIMVHNHQQLPQL  268


>gi|73912496|dbj|BAE20328.1|  omega-5 gliadin [Triticum aestivum]
Length=439

 Score = 32.7 bits (73),  Expect = 2.3
 Identities = 48/205 (23%), Positives = 72/205 (35%), Gaps = 27/205 (13%)
 Frame = +1

Query  73   TNHHQFTNLQRSQNPN--PLSMNPQrrrsrspshrFTNLQR--RKSQNPNHQFMNLPRNH  240
            T   QF   Q+   P   P    PQ+ +      +F   Q+  ++ Q P  Q   +P+ H
Sbjct  32   TPQEQFPQQQQFPQPQQFPQQQIPQQHQIPQQPQQFPQQQQFLQQQQIPQQQ---IPQQH  88

Query  241  RCMSLQRNRQFMNLSLQSHQFMSLSHQSHQYMNLSHQFMNLSHQSHQFMSLQRSLRCMSL  420
            +    Q+ +QF     Q  QF    HQS Q      QF        +F   Q S +   L
Sbjct  89   QIP--QQPQQFP----QQQQFPQ-QHQSPQQQFPQQQFPQQKLPQQEFPQQQISQQPQQL  141

Query  421  QRNHQYMNLSHQSHQFMNLSHQSHQFMNLQRKRSQNPNHQYMSLQRSLQCMNLSHQNHQY  600
             +  Q             +  Q  QF+  Q+   Q P  Q+   Q+ L       Q  Q 
Sbjct  142  PQQQQ-------------IPQQPQQFLQQQQFPQQQPPQQHQFPQQQLPQQQQIPQQQQI  188

Query  601  MNLSHQNRQFMNLRRKRSQSPNHRF  675
                 Q  Q   + ++  Q P  +F
Sbjct  189  PQQPQQIPQQQQIPQQPQQFPQQQF  213


>gi|21765|emb|CAA26385.1|  unnamed protein product [Triticum aestivum]
Length=313

 Score = 32.7 bits (73),  Expect = 2.3
 Identities = 43/196 (21%), Positives = 75/196 (38%), Gaps = 28/196 (14%)
 Frame = +1

Query  46   LPR*SHPQFTNHHQFTNLQRSQNPNPLSMNPQrrrsrspshrFTNLQRRKSQNPNHQFMN  225
            LP+  +PQ      F   Q      P+ + PQ+  S+  + +    Q+++ Q    Q + 
Sbjct  85   LPQLPYPQ---PQSFPPQQPYPQQRPMYLQPQQPISQQQAQQQQQQQQQQQQQQQQQILQ  141

Query  226  LPRNHRCMSLQRNRQFMNLSLQSHQFMSLSHQSHQYMNLSHQFMNLSHQSHQFMSLQRSL  405
                 + +  +      ++ LQ H   +++H S Q +  S   +       Q + +    
Sbjct  142  QILQQQLIPCR------DVVLQQH---NIAHASSQVLQQSTYQLLQQLCCQQLLQIPEQS  192

Query  406  RCMSLQRNHQYMNLSHQSHQFMNLSHQSHQFMNLQRKRSQN------------PNHQYMS  549
            RC ++  N  +  + HQ  Q   L  Q  Q +  Q+++ Q             P  QY S
Sbjct  193  RCQAIH-NVVHAIIMHQQEQQQQLQQQQQQQLQQQQQQQQQQQQPSSQVSFQQPQQQYPS  251

Query  550  LQRSLQCMNLSHQNHQ  597
             Q S Q    S QN Q
Sbjct  252  SQGSFQ---PSQQNPQ  264


>gi|92876113|gb|ABE83846.1|  Leucine-rich repeat; Leucine-rich repeat, cysteine-containing 
type [Medicago truncatula]
Length=1026

 Score = 32.3 bits (72),  Expect = 3.0
 Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 23/134 (17%)
 Frame = +1

Query  253  LQRNRQFMNLSLQSHQFMS------LSHQSHQYMNLSHQFMNLSHQSHQFMSLQRSLRCM  414
            L+     +NL L ++Q         L+ Q  QY+N+SH F+     S Q  ++  +L  +
Sbjct  512  LRNQSTLINLDLSNNQIQGVLPNWILTLQVLQYLNISHNFLTEMEGSSQ--NIASNLLYI  569

Query  415  SLQRNH--------QYMN-LSHQSHQFMNLSHQSHQFMNLQRKRSQNPNHQYMSLQRS--  561
             L  NH        +Y+  L + +++F  + H    +++  +  S + N    S+  S  
Sbjct  570  DLHNNHIQGIPVFLEYLEYLDYSTNKFSVIPHDIGNYLSYTQFLSLSNNSLQGSIPDSLC  629

Query  562  ----LQCMNLSHQN  591
                LQ ++LS  N
Sbjct  630  NASYLQVLDLSFNN  643


>gi|79384353|ref|NP_177919.2|  unknown protein [Arabidopsis thaliana]
 gi|60547687|gb|AAX23807.1|  hypothetical protein At1g77960 [Arabidopsis thaliana]
Length=420

 Score = 32.3 bits (72),  Expect = 3.0
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +1

Query  430  HQYMNLSHQSHQFMNLSHQSHQFMNLQRKRSQNPN-HQYMSLQRSLQCMNLSHQNHQYMN  606
            HQ  N +   HQ  N     HQ+ N  + + QN + H+ +  Q+  Q +N SH+      
Sbjct  86   HQNQNQNQHQHQNQNQHQHQHQYQNQHQHQYQNQHQHRVVQQQQQQQLIN-SHETWLQDK  144

Query  607  LSH  615
            LS+
Sbjct  145  LSN  147


>gi|92870471|gb|ABE79766.1|  Zinc finger, C2H2-type [Medicago truncatula]
Length=517

 Score = 32.0 bits (71),  Expect = 3.9
 Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 14/89 (15%)
 Frame = +1

Query  286  LQSHQFMSLSHQSHQYM-NLSHQFMNLSHQSHQFMSLQRSLRCMSLQRNHQYMNLSH---  453
            L S Q +S S   H +M NL +QF N     H F  L++       ++++Q  NLS    
Sbjct  234  LPSQQQLSSSSSHHHHMINLQNQFNNPQQDLHNFPLLKK-------EQHNQSFNLSEIPP  286

Query  454  --QSHQFMNLSHQSHQFMNLQRKRSQNPN  534
                H   NLS  S  F +      +NPN
Sbjct  287  WLGPHNVDNLSSSSSIF-SQHHHHQENPN  314


>gi|53982307|gb|AAV25286.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
 gi|57863882|gb|AAW56922.1|  putative NBS-LRR-like protein [Oryza sativa (japonica cultivar-group)]
Length=1165

 Score = 32.0 bits (71),  Expect = 3.9
 Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 2/105 (1%)
 Frame = +1

Query  373  SHQFMSLQRSLRCMSLQRNHQYMNLSHQSHQFMNLSHQSHQFMNLQRKRSQNPNHQYMSL  552
            S+ F++   SLR ++LQ     + L        +L + +    ++    S   + +++ +
Sbjct  617  SNDFLNSLSSLRVLNLQNIVNLVELPQSICHLKHLRYLAVAGTSISTIHSNIGDLKFLQV  676

Query  553  QRSLQCMNLSHQNHQYMNLSHQNRQFMNLRRKRSQSPNHRFTNLR  687
               + C N++      + L  Q  +F+NLRR R  S  H F  L+
Sbjct  677  IDLVDCTNITQLPQSILKL--QKLRFLNLRRTRITSIPHGFGRLK  719