RID=1168937023-23753-83384564057.BLASTQ1, Contig178

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168937023-23753-83384564057.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig178
Length=286

Distribution of 12 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|13359451|dbj|BAB33421.1|  putative senescence-associated prote   164    3e-41
gi|38640720|gb|AAR25995.1|  putative senescence-associated protei   114    8e-26
gi|110740129|dbj|BAF01964.1|  hypothetical protein [Arabidopsis t   107    2e-23
gi|75755920|gb|ABA27017.1|  TO54-2 [Taraxacum officinale]          89.0    5e-18
gi|37991873|gb|AAR06319.1|  hypothetical protein [Oryza sativa...  30.0    2.5   
gi|15221022|ref|NP_175804.1|  carboxylic ester hydrolase/ hydr...  29.3    4.3   
gi|4587543|gb|AAD25774.1|AC006577_10  Belongs to the PF|00657 ...  29.3    4.3  
gi|11497540|ref|NP_054948.1|  potential heme-binding protein [...  28.9    5.6   
gi|14285379|sp|Q9M3L4|CEMA_SPIOL  Chloroplast envelope membrane p  28.9    5.6  
gi|28202184|ref|NP_777425.1|  Ycf10 protein [Anthoceros formos...  28.9    5.6   
gi|79474118|ref|NP_193133.3|  unknown protein [Arabidopsis thalia  28.1    9.5

Alignments

 

>gi|13359451|dbj|BAB33421.1|  putative senescence-associated protein [Pisum sativum]
Length=282

 Score =  164 bits (414),  Expect(2) = 3e-41
 Identities = 77/84 (91%), Positives = 77/84 (91%), Gaps = 0/84 (0%)
 Frame = +3

Query  3    VELLSRRGHQ*GKTNLSHDGLIPAHVPYWWVNNPTLGEFCFTMIGRADIEGSKSNVAMNA  182
            VELL R  HQ GKTNLSHDGLIPAHVPYWWVNNPTLGEFCFTMIGRADIEGSKSNVAMNA
Sbjct  49   VELLLRHCHQWGKTNLSHDGLIPAHVPYWWVNNPTLGEFCFTMIGRADIEGSKSNVAMNA  108

Query  183  WLPQASYPCGNFSDTSSFKSRRSK  254
            WLPQASYPCGNFSDTSSFK R  K
Sbjct  109  WLPQASYPCGNFSDTSSFKFRSLK  132


 Score = 23.1 bits (48),  Expect(2) = 3e-41
 Identities = 11/12 (91%), Positives = 11/12 (91%), Gaps = 0/12 (0%)
 Frame = +1

Query  250  LKDR*ATLSRFV  285
            LKDR ATLSRFV
Sbjct  131  LKDRLATLSRFV  142


>gi|38640720|gb|AAR25995.1|  putative senescence-associated protein [Pyrus communis]
Length=93

 Score =  114 bits (286),  Expect = 8e-26
 Identities = 54/55 (98%), Positives = 54/55 (98%), Gaps = 0/55 (0%)
 Frame = +3

Query  120  CFTMIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKSRRSKGSIGHAFTVR  284
            CFTMIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFK RRSKGSIGHAFTVR
Sbjct  1    CFTMIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVR  55


>gi|110740129|dbj|BAF01964.1|  hypothetical protein [Arabidopsis thaliana]
Length=167

 Score =  107 bits (266),  Expect = 2e-23
 Identities = 51/52 (98%), Positives = 51/52 (98%), Gaps = 0/52 (0%)
 Frame = +3

Query  129  MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKSRRSKGSIGHAFTVR  284
            MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFK RRSKGSIGHAFTVR
Sbjct  1    MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVR  52


>gi|75755920|gb|ABA27017.1|  TO54-2 [Taraxacum officinale]
Length=79

 Score = 89.0 bits (219),  Expect = 5e-18
 Identities = 41/43 (95%), Positives = 42/43 (97%), Gaps = 0/43 (0%)
 Frame = +3

Query  156  SKSNVAMNAWLPQASYPCGNFSDTSSFKSRRSKGSIGHAFTVR  284
            SKSNVAMNAWLPQASYPCGNFSDTSSFK RRSKGS+GHAFTVR
Sbjct  3    SKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSLGHAFTVR  45


>gi|37991873|gb|AAR06319.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
 gi|108709595|gb|ABF97390.1|  hypothetical protein LOC_Os03g39370 [Oryza sativa (japonica cultivar-group)]
Length=283

 Score = 30.0 bits (66),  Expect = 2.5
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 0/27 (0%)
 Frame = -1

Query  187  SQAFIATLLFDPSMSALPIIVKQNSPS  107
            SQAF A LL D + +A+P++V Q  P+
Sbjct  229  SQAFSAVLLADANRAAIPVVVVQKRPA  255


>gi|15221022|ref|NP_175804.1|  carboxylic ester hydrolase/ hydrolase, acting on ester bonds 
[Arabidopsis thaliana]
 gi|13194788|gb|AAK15556.1|AF348585_1  putative myrosinase-associated protein [Arabidopsis thaliana]
 gi|15809980|gb|AAL06917.1|  At1g54020/F15I1_10 [Arabidopsis thaliana]
 gi|22135761|gb|AAM91037.1|  At1g54020/F15I1_10 [Arabidopsis thaliana]
Length=372

 Score = 29.3 bits (64),  Expect = 4.3
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 0/36 (0%)
 Frame = -1

Query  199  LACGSQAFIATLLFDPSMSALPIIVKQNSPSVGLFT  92
            + C S + +  LL  P +  L  I  QN P+VGLFT
Sbjct  1    MECSSVSVLGILLVFPLLHNLVTISGQNLPAVGLFT  36


>gi|4587543|gb|AAD25774.1|AC006577_10  Belongs to the PF|00657 Lipase/Acylhydrolase with GDSL-motif 
family.  EST gb|AB015099 comes from this gene. [Arabidopsis 
thaliana]
Length=380

 Score = 29.3 bits (64),  Expect = 4.3
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 0/36 (0%)
 Frame = -1

Query  199  LACGSQAFIATLLFDPSMSALPIIVKQNSPSVGLFT  92
            + C S + +  LL  P +  L  I  QN P+VGLFT
Sbjct  1    MECSSVSVLGILLVFPLLHNLVTISGQNLPAVGLFT  36


>gi|11497540|ref|NP_054948.1|  potential heme-binding protein [Spinacia oleracea]
 gi|7636121|emb|CAB88741.1|  potential heme-binding protein [Spinacia oleracea]
Length=233

 Score = 28.9 bits (63),  Expect = 5.6
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +3

Query  120  CFTMIGRADIEGSKSNVAMNAWLPQASYPCGNFSDT  227
            CF ++G   I G+K  + +N+W+ +  Y   N SDT
Sbjct  120  CFLILGGYSILGNKELILLNSWVQEFLY---NLSDT  152


>gi|14285379|sp|Q9M3L4|CEMA_SPIOL  Chloroplast envelope membrane protein
Length=229

 Score = 28.9 bits (63),  Expect = 5.6
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +3

Query  120  CFTMIGRADIEGSKSNVAMNAWLPQASYPCGNFSDT  227
            CF ++G   I G+K  + +N+W+ +  Y   N SDT
Sbjct  116  CFLILGGYSILGNKELILLNSWVQEFLY---NLSDT  148


>gi|28202184|ref|NP_777425.1|  Ycf10 protein [Anthoceros formosae]
 gi|41688496|sp|Q85AP4|CEMA_ANTFO  Chloroplast envelope membrane protein
 gi|27807886|dbj|BAC55361.1|  Ycf10 protein [Anthoceros formosae]
 gi|27808020|dbj|BAC55457.1|  Ycf10 protein [Anthoceros formosae]
Length=508

 Score = 28.9 bits (63),  Expect = 5.6
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +3

Query  111  GEFCFTMIGRADIEGSKSNVAMNAWLPQASYPCGNFSDT  227
            G  CFT +G   I G K    +N+W+ ++ Y   + SDT
Sbjct  392  GMICFTTLGALFILGKKRLSVLNSWIQESFY---SLSDT  427


>gi|79474118|ref|NP_193133.3|  unknown protein [Arabidopsis thaliana]
Length=778

 Score = 28.1 bits (61),  Expect = 9.5
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 10/65 (15%)
 Frame = +3

Query  93   VNNPTLGEFCFTMIGRADIEGSKSNVAMNAWLPQASY------PCGNFSDTSSF----KS  242
            V NPTL EF  T +  + +EG + N+   A +P           C N    +SF    + 
Sbjct  12   VQNPTLPEFSSTDLVWSKVEGYRDNIDRLALIPYTRVDDFVRGECSNKDCPTSFHVEARR  71

Query  243  RRSKG  257
            R++KG
Sbjct  72   RKAKG  76

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 151
Number of extensions: 1
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 286
Length of database: 101054579
Length adjustment: 65
Effective length of query: 221
Effective length of database: 82636894
Effective search space: 2479106820
Effective search space used: 2479106820
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 61 (28.1 bits)