RID=1168937225-8697-159709232079.BLASTQ1, Contig185

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168937225-8697-159709232079.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Score E Sequences producing significant alignments: (Bits) Value gi|115436678|ref|NP_001043097.1| Os01g0384300 [Oryza sativa (... 34.3 0.13

gi|15230083|ref|NP_189624.1| RALFL27 (RALF-LIKE 27) [Arabidop... 30.8 1.5

gi|81158548|gb|ABB55565.1| NADH dehydrogenase subunit F [Haplolo 28.1 9.5 gi|6522566|emb|CAB62010.1| RNA polymerase III subunit-like prote 28.1 9.5

Alignments

 

>gi|115436678|ref|NP_001043097.1|  Os01g0384300 [Oryza sativa (japonica cultivar-group)]
 gi|21952864|dbj|BAC06279.1|  receptor protein kinase PERK1-like protein [Oryza sativa (japonica 
cultivar-group)]
 gi|113532628|dbj|BAF05011.1|  Os01g0384300 [Oryza sativa (japonica cultivar-group)]
Length=640

 Score = 34.3 bits (77),  Expect = 0.13
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
 Frame = -3

Query  267  GCMQFPYIFALQIGGFSKLR*EICLDGGPARCLWLIRVPPRNTSSSS-PSMYSAIVSSYL  91
            GC+Q+P+I+A   G  +  R     D   A CL+L++V   + +SSS P     +V   +
Sbjct  184  GCVQYPFIYA---GAAASPR--GADDPATANCLYLLKVNSASKASSSVPGWVYGVVFGCV  238

Query  90   VVYILLSGAAALDRVVLNRKNSKEA  16
             + +L++ AAA   +V  R+    A
Sbjct  239  AMVLLVAAAAASWFLVRRRRRRAAA  263


>gi|15230083|ref|NP_189624.1|  RALFL27 (RALF-LIKE 27) [Arabidopsis thaliana]
 gi|9294122|dbj|BAB01973.1|  unnamed protein product [Arabidopsis thaliana]
Length=117

 Score = 30.8 bits (68),  Expect = 1.5
 Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 0/23 (0%)
 Frame = +2

Query  194  RHISYRSLENPPICNANIYGNCI  262
            +++SY++L+  P C+  I GNCI
Sbjct  75   KYLSYKTLQKQPTCDGRIAGNCI  97


>gi|81158548|gb|ABB55565.1|  NADH dehydrogenase subunit F [Haplolophium nunezii]
Length=700

 Score = 28.1 bits (61),  Expect = 9.5
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query  203  SYRSLENPPICNANIYG-NCIQPIGQNYR  286
            +Y   +N P+C+ +I+G  C Q I +N+R
Sbjct  456  NYSGSQNTPLCSISIWGKGCSQKINKNFR  484


>gi|6522566|emb|CAB62010.1|  RNA polymerase III subunit-like protein [Arabidopsis thaliana]
Length=529

 Score = 28.1 bits (61),  Expect = 9.5
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 0/42 (0%)
 Frame = -3

Query  141  TSSSSPSMYSAIVSSYLVVYILLSGAAALDRVVLNRKNSKEA  16
            TSS  P+  + +  SY+V Y  +   A  D  V+ R+  KEA
Sbjct  347  TSSYLPAFVNEVNDSYIVDYKSIISVAQKDEAVVMRRYGKEA  388

Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 179 Number of extensions: 1 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 287 Length of database: 101054579 Length adjustment: 65 Effective length of query: 222 Effective length of database: 82636894 Effective search space: 2479106820 Effective search space used: 2479106820 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 61 (28.1 bits)

Distribution of 4 Blast Hits on the Query Sequence