RID=1168938007-25717-112306071804.BLASTQ4, Contig201

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168938007-25717-112306071804.BLASTQ4 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig201
Length=672

Distribution of 13 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|92867201|gb|ABE77552.1|  conserved hypothetical protein [Medic   128    2e-29
gi|52354245|gb|AAU44443.1|  hypothetical protein AT2G02955 [Arabi   124    2e-28 
gi|22325438|ref|NP_671769.1|  unknown protein [Arabidopsis tha...   124    2e-28 
gi|114053441|gb|AAK91899.2|AC091627_12  hypothetical protein SDM1   122    1e-27
gi|115463359|ref|NP_001055279.1|  Os05g0352700 [Oryza sativa (...  65.1    2e-10 
gi|15230378|ref|NP_188572.1|  unknown protein [Arabidopsis tha...  32.3    1.6   
gi|15233681|ref|NP_192646.1|  unknown protein [Arabidopsis tha...  31.6    2.8   
gi|115446483|ref|NP_001047021.1|  Os02g0530600 [Oryza sativa (...  31.2    3.7   
gi|21742522|emb|CAD40147.1|  OSJNBb0069N01.16 [Oryza sativa (japo  31.2    3.7   
gi|58532082|emb|CAI44642.1|  OSJNBa0057M08.14 [Oryza sativa (japo  30.4    6.3  
gi|18405834|ref|NP_565962.1|  nucleic acid binding / transcrip...  30.4    6.3   
gi|115473845|ref|NP_001060521.1|  Os07g0658600 [Oryza sativa (...  30.4    6.3   
gi|108862616|gb|ABA97726.2|  retrotransposon protein, putative...  30.0    8.2

Alignments

 

>gi|92867201|gb|ABE77552.1|  conserved hypothetical protein [Medicago truncatula]
Length=238

 Score =  128 bits (322),  Expect = 2e-29
 Identities = 85/221 (38%), Positives = 120/221 (54%), Gaps = 32/221 (14%)
 Frame = -2

Query  665  DAVELLCNLEARYNEINYAAGDVKLTDLSKSMPTYLQFCQDVVFAGSELPLDFYHEEKGL  486
            D+  LL +L A Y EI          + SK +PTYL++ +DVVF GS+      +EE+ +
Sbjct  2    DSAVLLQHLHAIYEEI------ADNHEYSKDLPTYLKYRRDVVFDGSKEQSYDNYEEQRM  55

Query  485  IDKFWDFYQKEKGS-EPAEDMGERYRISDDIVCKVDRRIRDSECHSSPSKDGRTSLDDLS  309
            I+   +FYQ EK + +P+E  G+     + +    +  IR +    + S  G  S+ + +
Sbjct  56   IEILRNFYQNEKNTTKPSEHAGKSNTSFNRLRLTDEGHIRRTSKMKNTSPYGEDSVFNKN  115

Query  308  SQKRMEDFehssltseehessetSNKVPAENSKHRAIRLMKKNMEENRFLYIPPRVKLKR  129
                                   S K   +     AI  MK +MEEN F Y+PPRVK K 
Sbjct  116  G---------------------GSGKAVVDE----AITQMKLDMEENLFCYVPPRVKPKN  150

Query  128  LSYLHYARKKDEGAMIYVAHADYYILLRSCARVAEVDMRIM  6
            L Y+HY RKKD+GAM YVAHADYYILLR+CAR+A+VD+RI+
Sbjct  151  LDYVHYVRKKDKGAMTYVAHADYYILLRTCARIAQVDIRIL  191


>gi|52354245|gb|AAU44443.1|  hypothetical protein AT2G02955 [Arabidopsis thaliana]
Length=526

 Score =  124 bits (312),  Expect = 2e-28
 Identities = 88/233 (37%), Positives = 121/233 (51%), Gaps = 41/233 (17%)
 Frame = -2

Query  671  KFDAVELLCNLEARYNEINYAAGDVKLTDLSKSMPTYLQFCQDVVFAGSE--LPLDFYHE  498
            +FD  ELL NLEA+Y+E+       +  +  K + +YL   ++  FAG E   P D Y  
Sbjct  280  EFDTQELLKNLEAKYHEVA-----AETLESEKDLVSYLSLGKNEFFAGLEEDSPDDTYR-  333

Query  497  EKGLIDKFWDFYQKEKGSEPAEDMGERYRISDDIVCKVDRRIRDSE-------CHSSPSK  339
               ++D  W+ Y K+   E  E + +R R  DD V      + DS        C SS  +
Sbjct  334  ---IVDNLWNGYPKD---EDIECLPKRGRDWDDDVSLNQLSLYDSRFSDGNNPCSSSSRR  387

Query  338  DGRTSLD-DLSSQKRMEDFehssltseehessetSNKVPAENSKHRAIRLMKKNMEENRF  162
            +   S+  DLSS +  E                       E  K  AI+ +  +M ++ F
Sbjct  388  NESVSIGLDLSSSEHRESSSP-------------------EKLKEIAIKRLITDMGDDLF  428

Query  161  LYIPPRVKLKRLSYLHYARKKDEGAMIYVAHADYYILLRSCARVAEVDMRIMH  3
             YIPPRVK+KRL YL Y RKK++GA+IY AHADYYILLR CA+VAE+D+R MH
Sbjct  429  CYIPPRVKVKRLDYLQYVRKKEDGALIYAAHADYYILLRVCAKVAEIDVRNMH  481


>gi|22325438|ref|NP_671769.1|  unknown protein [Arabidopsis thaliana]
 gi|52354243|gb|AAU44442.1|  hypothetical protein AT2G02955 [Arabidopsis thaliana]
Length=666

 Score =  124 bits (312),  Expect = 2e-28
 Identities = 88/233 (37%), Positives = 121/233 (51%), Gaps = 41/233 (17%)
 Frame = -2

Query  671  KFDAVELLCNLEARYNEINYAAGDVKLTDLSKSMPTYLQFCQDVVFAGSE--LPLDFYHE  498
            +FD  ELL NLEA+Y+E+       +  +  K + +YL   ++  FAG E   P D Y  
Sbjct  420  EFDTQELLKNLEAKYHEVA-----AETLESEKDLVSYLSLGKNEFFAGLEEDSPDDTYR-  473

Query  497  EKGLIDKFWDFYQKEKGSEPAEDMGERYRISDDIVCKVDRRIRDSE-------CHSSPSK  339
               ++D  W+ Y K+   E  E + +R R  DD V      + DS        C SS  +
Sbjct  474  ---IVDNLWNGYPKD---EDIECLPKRGRDWDDDVSLNQLSLYDSRFSDGNNPCSSSSRR  527

Query  338  DGRTSLD-DLSSQKRMEDFehssltseehessetSNKVPAENSKHRAIRLMKKNMEENRF  162
            +   S+  DLSS +  E                       E  K  AI+ +  +M ++ F
Sbjct  528  NESVSIGLDLSSSEHRESSSP-------------------EKLKEIAIKRLITDMGDDLF  568

Query  161  LYIPPRVKLKRLSYLHYARKKDEGAMIYVAHADYYILLRSCARVAEVDMRIMH  3
             YIPPRVK+KRL YL Y RKK++GA+IY AHADYYILLR CA+VAE+D+R MH
Sbjct  569  CYIPPRVKVKRLDYLQYVRKKEDGALIYAAHADYYILLRVCAKVAEIDVRNMH  621


>gi|114053441|gb|AAK91899.2|AC091627_12  hypothetical protein SDM1_2t00007 [Solanum demissum]
Length=664

 Score =  122 bits (306),  Expect = 1e-27
 Identities = 90/242 (37%), Positives = 123/242 (50%), Gaps = 47/242 (19%)
 Frame = -2

Query  656  ELLCNLEARYNEINYAAGDVKLTDLSKSMPTYLQFCQDVVFAGSELPLDFYHEEKGLIDK  477
            ELL  LE +YNE++         D SK + +YL +C++VVFAG E   D  HEE+ +I+ 
Sbjct  411  ELLKILEEKYNELS------DTYDFSKDLQSYLLYCKNVVFAGLEPAYDD-HEEERIIED  463

Query  476  FWDFYQKEKGSEPAEDMGERYR---------------ISDDIVCKVDRRIRDSEC-----  357
            FWDFYQ  K     ++     R               I + I+ + D+   D +      
Sbjct  464  FWDFYQSHKIFIHNQNCTITTRAVLNYLLTLQSINLLIYNQII-QADKASEDGKTDSHTG  522

Query  356  ---HSSPSKDGRTSLDDLSSQKRMEDFehssltseehessetSNKVPAENSKHRAIRLMK  186
               H S S+ G  S     + K  E+F       +       SN          A+R +K
Sbjct  523  NHFHHSGSRHGSNS-----TTKENENFRDDGYKCKMSRDDGDSNA---------ALRQLK  568

Query  185  KNMEENRFLYIPPRVKLKRLS-YLHYARKKDEGAMIYVAHADYYILLRSCARVAEVDMRI  9
             +M ENRF+YIPPR  +K+   Y+ YARKKD GA +Y  HADYYILLRSCA+VA+VD+R 
Sbjct  569  ADMNENRFVYIPPRKNVKKKDGYIRYARKKD-GAYLYAVHADYYILLRSCAKVAQVDVRT  627

Query  8    MH  3
            MH
Sbjct  628  MH  629


>gi|115463359|ref|NP_001055279.1|  Os05g0352700 [Oryza sativa (japonica cultivar-group)]
 gi|55168006|gb|AAV43874.1|  unknown protein [Oryza sativa (japonica cultivar-group)]
 gi|113578830|dbj|BAF17193.1|  Os05g0352700 [Oryza sativa (japonica cultivar-group)]
Length=1221

 Score = 65.1 bits (157),  Expect = 2e-10
 Identities = 44/109 (40%), Positives = 60/109 (55%), Gaps = 15/109 (13%)
 Frame = -2

Query  671  KFDAVELLCNLEARYNEINYAAGDVKLTDLSKSMPTYLQFCQDVVFAGSELPLDFYHEEK  492
            +FDA ELLC L A Y++IN         D SK + +YL++C+DVVF G    + F  EE+
Sbjct  484  EFDARELLCTLAASYDKINVGH------DYSKEVHSYLKYCKDVVFTG----MTFSLEEE  533

Query  491  GLIDKFWDFYQKEKGSEPAEDMGERYRISDDIVCKVDRRIRDSECHSSP  345
             LID FWD Y K K  E A+   E+ R ++     V++R RD      P
Sbjct  534  HLIDIFWDMY-KGKEDENAKLCQEKLRTTNG----VNKRCRDGRVAFRP  577


>gi|15230378|ref|NP_188572.1|  unknown protein [Arabidopsis thaliana]
 gi|11994463|dbj|BAB02465.1|  unnamed protein product [Arabidopsis thaliana]
Length=373

 Score = 32.3 bits (72),  Expect = 1.6
 Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
 Frame = -2

Query  530  GSELPLDFYHEEKGLIDKFWDFYQKEKGSEPAEDMGERYRISDDIVCKVDRRIRDSECHS  351
            G    L +Y E+K    K   FY   K  E  E   + +R  DDI C     +   +C S
Sbjct  142  GRNFVLGYYQEDKKTYYKILSFYLDSKDFEIFEFNSDSWRFIDDI-CPGLSLLYSDQCVS  200

Query  350  SPSKDGRTSLDDLSSQKRMEDF  285
                    ++DDLS      DF
Sbjct  201  LKGNTYMFAIDDLSVSLLKYDF  222


>gi|15233681|ref|NP_192646.1|  unknown protein [Arabidopsis thaliana]
 gi|7267550|emb|CAB78031.1|  putative protein [Arabidopsis thaliana]
Length=219

 Score = 31.6 bits (70),  Expect = 2.8
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -2

Query  647  CNLEARYNEINYAAGDVKLTDLSKSMPTYLQFCQDVVFAGSELPLDFYHEEKGLIDKFWD  468
            C L   +  + Y  GD +L  + K +PT+ +  + VV     LP+      K L+++F +
Sbjct  105  CKLSFYFEGLEYQLGDFRLR-VGKVVPTHAETIRGVVMEVEYLPISSMGMAKKLMEEFLE  163

Query  467  FYQK  456
             +Q+
Sbjct  164  IWQE  167


>gi|115446483|ref|NP_001047021.1|  Os02g0530600 [Oryza sativa (japonica cultivar-group)]
 gi|118573102|sp|Q0E0Q3|PARP3_ORYSA  Poly [ADP-ribose] polymerase 3 (PARP-3) (ADPRT 3) (NAD(+) ADP-ribosyltransferase 
3) (Poly[ADP-ribose] synthetase 3)
 gi|113536552|dbj|BAF08935.1|  Os02g0530600 [Oryza sativa (japonica cultivar-group)]
Length=831

 Score = 31.2 bits (69),  Expect = 3.7
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -1

Query  252  KFRNQQQSSGRELQT*SNKT-DEEKHGGEQVPLYPTKGQAEETQL  121
            K  +++Q  G++  + + KT D E+H GEQ P    K +AEE+ L
Sbjct  25   KTESKEQEGGQQAPSKNKKTADNEEHDGEQEPSKNKKLKAEESDL  69


>gi|21742522|emb|CAD40147.1|  OSJNBb0069N01.16 [Oryza sativa (japonica cultivar-group)]
Length=409

 Score = 31.2 bits (69),  Expect = 3.7
 Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
 Frame = +2

Query  383  PLCRQCRRKSYNALPCLLLAQNPFLSDKNPKTCQLNLSPRDKSPEAALIQQR-PRPDRIV  559
            P C  CR + + AL C  +      S        LN  PR KS   A +Q R P  +  +
Sbjct  99   PFCHDCREQGHYALNCPWVYAKEAPSFGLAGQTSLNQPPRTKSSLQASVQSREPNGENPL  158

Query  560  DTLACF*KDLS  592
            +   CF   LS
Sbjct  159  NPRKCFPPSLS  169


>gi|58532082|emb|CAI44642.1|  OSJNBa0057M08.14 [Oryza sativa (japonica cultivar-group)]
Length=497

 Score = 30.4 bits (67),  Expect = 6.3
 Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
 Frame = +2

Query  383  PLCRQCRRKSYNALPCLLLAQNPFLSDKNPKTCQLNLSPRDKSPEAALIQ-QRPRPDRIV  559
            P C  CR + + AL C  +      S        LN  PR KS     +Q + P  D  +
Sbjct  159  PFCHDCREQGHYALNCPWVYVKEAPSFGLAGQTSLNQPPRTKSSLQPSVQSEEPNGDNPL  218

Query  560  DTLACF*KDLSI*HH  604
            +   CF   LS  HH
Sbjct  219  NPRKCFPPSLS--HH  231


>gi|18405834|ref|NP_565962.1|  nucleic acid binding / transcription factor [Arabidopsis thaliana]
 gi|14335106|gb|AAK59832.1|  At2g41900/T6D20.20 [Arabidopsis thaliana]
 gi|20198317|gb|AAB63552.2|  putative CCCH-type zinc finger protein [Arabidopsis thaliana]
 gi|20334714|gb|AAM16218.1|  At2g41900/T6D20.20 [Arabidopsis thaliana]
Length=716

 Score = 30.4 bits (67),  Expect = 6.3
 Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 0/22 (0%)
 Frame = -3

Query  379  EGSEIANVIVVPPKTEGLPLMI  314
            EG    +VIVVPPK EG+ LM+
Sbjct  161  EGQRAGDVIVVPPKLEGVKLML  182


>gi|115473845|ref|NP_001060521.1|  Os07g0658600 [Oryza sativa (japonica cultivar-group)]
 gi|22775625|dbj|BAC15479.1|  nucleoid DNA-binding-like protein [Oryza sativa (japonica cultivar-group)]
 gi|50510141|dbj|BAD31106.1|  nucleoid DNA-binding-like protein [Oryza sativa (japonica cultivar-group)]
 gi|113612057|dbj|BAF22435.1|  Os07g0658600 [Oryza sativa (japonica cultivar-group)]
Length=449

 Score = 30.4 bits (67),  Expect = 6.3
 Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
 Frame = +2

Query  410  SYNALPC----LLLAQNPFLSDKNPKTCQLNLSPRDKSPEAALIQ  532
            SY  +PC     +LA NP  S  N K+C  +LS  D S +AAL Q
Sbjct  154  SYRPVPCGSPQCVLAPNPSCSP-NAKSCGFSLSYADSSLQAALSQ  197


>gi|108862616|gb|ABA97726.2|  retrotransposon protein, putative, unclassified [Oryza sativa 
(japonica cultivar-group)]
Length=419

 Score = 30.0 bits (66),  Expect = 8.2
 Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
 Frame = +2

Query  383  PLCRQCRRKSYNALPCLLLAQNPFLSDKNPKTCQLNLSPRDKSPEAALIQQR-PRPDRIV  559
            P C  CR + + AL C  +      S        LN  P  KS     +Q R P  +  +
Sbjct  109  PFCHDCREQGHYALNCPWVYAKEAPSFGLAGQTSLNQPPHTKSSLQPSVQSREPNGENPL  168

Query  560  DTLACF*KDLSI*HH  604
            +T  CF   LS  HH
Sbjct  169  NTGKCFPPSLS--HH  181

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 534
Number of extensions: 9
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 672
Length of database: 101054579
Length adjustment: 109
Effective length of query: 563
Effective length of database: 70169538
Effective search space: 8069496870
Effective search space used: 8069496870
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 65 (29.6 bits)