RID=1168938159-10965-37539986218.BLASTQ4, Contig207

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168938159-10965-37539986218.BLASTQ4 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig207
Length=137

Distribution of 17 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|110377766|gb|ABG73415.1|  chloroplast pigment-binding protein   68.2    8e-12
gi|4689382|gb|AAD27878.1|AF139466_1  chlorophyll a/b binding prot  67.8    1e-11
gi|92871882|gb|ABE80774.1|  Chlorophyll A-B binding protein [Medi  67.4    1e-11
gi|13877547|gb|AAK43851.1|AF370474_1  chlorophyll a/b-binding ...  65.5    5e-11 
gi|20260162|gb|AAM12979.1|  chlorophyll a/b-binding protein CP29   65.5    5e-11 
gi|15081739|gb|AAK82524.1|  AT5g01530/F7A7_50 [Arabidopsis thalia  65.5    5e-11 
gi|15241005|ref|NP_195773.1|  chlorophyll binding [Arabidopsis...  65.5    5e-11 
gi|115472753|ref|NP_001059975.1|  Os07g0558400 [Oryza sativa (...  64.3    1e-10 
gi|445116|prf||1908421A  light-harvesting complex IIa protein;     64.3    1e-10
gi|30680697|ref|NP_850545.1|  LHCB4.2; chlorophyll binding [Arabi  63.2    3e-10 
gi|15231990|ref|NP_187506.1|  LHCB4.2 [Arabidopsis thaliana] >...  63.2    3e-10 
gi|2326947|emb|CAA90681.1|  Chlorophyll a/b-binding protein CP29   60.5    2e-09 
gi|15225630|ref|NP_181539.1|  LHCB4.3; chlorophyll binding [Ar...  57.8    1e-08 
gi|21594018|gb|AAM65936.1|  putative chlorophyll a/b binding prot  54.7    1e-07 
gi|957271|gb|AAB34049.1|  chlorophyll a/b protein CP29, photos...  33.9    0.17 
gi|1362191|pir||A56376  chlorophyll a/b-binding protein CP29 - ma  33.9    0.17 
gi|63029289|gb|AAY27543.1|  chloroplast chlorophyll a/b-bindin...  29.3    4.3

Alignments

 

>gi|110377766|gb|ABG73415.1|  chloroplast pigment-binding protein CP29 [Nicotiana tabacum]
Length=285

 Score = 68.2 bits (165),  Expect = 8e-12
 Identities = 29/37 (78%), Positives = 37/37 (100%), Gaps = 0/37 (0%)
 Frame = -1

Query  137  QYELDSLDQNLAKNVAGEIIGTRTEVSDVKATPFQPY  27
            Q++LDSLDQNLAKN+AG++IGTRTE++DVK+TPFQPY
Sbjct  84   QFDLDSLDQNLAKNLAGDVIGTRTELADVKSTPFQPY  120


>gi|4689382|gb|AAD27878.1|AF139466_1  chlorophyll a/b binding protein CP29 [Vigna radiata]
Length=290

 Score = 67.8 bits (164),  Expect = 1e-11
 Identities = 32/37 (86%), Positives = 35/37 (94%), Gaps = 0/37 (0%)
 Frame = -1

Query  137  QYELDSLDQNLAKNVAGEIIGTRTEVSDVKATPFQPY  27
            Q+ELDSLDQNLAKN AG IIGTRTEV+DVK+TPFQPY
Sbjct  90   QFELDSLDQNLAKNEAGIIIGTRTEVADVKSTPFQPY  126


>gi|92871882|gb|ABE80774.1|  Chlorophyll A-B binding protein [Medicago truncatula]
Length=289

 Score = 67.4 bits (163),  Expect = 1e-11
 Identities = 29/37 (78%), Positives = 36/37 (97%), Gaps = 0/37 (0%)
 Frame = -1

Query  137  QYELDSLDQNLAKNVAGEIIGTRTEVSDVKATPFQPY  27
            Q++LDSLDQNLAKN+AG++IGTRTE +DVK+TPFQPY
Sbjct  90   QFDLDSLDQNLAKNLAGDVIGTRTEFADVKSTPFQPY  126


>gi|13877547|gb|AAK43851.1|AF370474_1  chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
 gi|23198310|gb|AAN15682.1|  chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
Length=290

 Score = 65.5 bits (158),  Expect = 5e-11
 Identities = 27/37 (72%), Positives = 35/37 (94%), Gaps = 0/37 (0%)
 Frame = -1

Query  137  QYELDSLDQNLAKNVAGEIIGTRTEVSDVKATPFQPY  27
            Q+++DSLDQNLAKN+AG++IGTRTE +D K+TPFQPY
Sbjct  91   QFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPY  127


>gi|20260162|gb|AAM12979.1|  chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
Length=290

 Score = 65.5 bits (158),  Expect = 5e-11
 Identities = 27/37 (72%), Positives = 35/37 (94%), Gaps = 0/37 (0%)
 Frame = -1

Query  137  QYELDSLDQNLAKNVAGEIIGTRTEVSDVKATPFQPY  27
            Q+++DSLDQNLAKN+AG++IGTRTE +D K+TPFQPY
Sbjct  91   QFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPY  127


>gi|15081739|gb|AAK82524.1|  AT5g01530/F7A7_50 [Arabidopsis thaliana]
Length=290

 Score = 65.5 bits (158),  Expect = 5e-11
 Identities = 27/37 (72%), Positives = 35/37 (94%), Gaps = 0/37 (0%)
 Frame = -1

Query  137  QYELDSLDQNLAKNVAGEIIGTRTEVSDVKATPFQPY  27
            Q+++DSLDQNLAKN+AG++IGTRTE +D K+TPFQPY
Sbjct  91   QFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPY  127


>gi|15241005|ref|NP_195773.1|  chlorophyll binding [Arabidopsis thaliana]
 gi|38502901|sp|Q07473|CB4A_ARATH  Chlorophyll a-b binding protein CP29.1, chloroplast precursor 
(LHCII protein 4.1) (LHCB4.1)
 gi|298036|emb|CAA50712.1|  CP29 [Arabidopsis thaliana]
 gi|7327812|emb|CAB82269.1|  chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
 gi|15081815|gb|AAK82562.1|  AT5g01530/F7A7_50 [Arabidopsis thaliana]
 gi|16323075|gb|AAL15272.1|  AT5g01530/F7A7_50 [Arabidopsis thaliana]
 gi|16648983|gb|AAL24343.1|  chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
 gi|20148703|gb|AAM10242.1|  chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
 gi|22137102|gb|AAM91396.1|  At5g01530/F7A7_50 [Arabidopsis thaliana]
 gi|110741014|dbj|BAE98601.1|  Lhcb4- protein [Arabidopsis thaliana]
Length=290

 Score = 65.5 bits (158),  Expect = 5e-11
 Identities = 27/37 (72%), Positives = 35/37 (94%), Gaps = 0/37 (0%)
 Frame = -1

Query  137  QYELDSLDQNLAKNVAGEIIGTRTEVSDVKATPFQPY  27
            Q+++DSLDQNLAKN+AG++IGTRTE +D K+TPFQPY
Sbjct  91   QFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPY  127


>gi|115472753|ref|NP_001059975.1|  Os07g0558400 [Oryza sativa (japonica cultivar-group)]
 gi|3075488|gb|AAC14566.1|  chlorophyll a/b-binding protein [Oryza sativa]
 gi|34394009|dbj|BAC84033.1|  chlorophyll a/b-binding protein [Oryza sativa (japonica cultivar-group)]
 gi|113611511|dbj|BAF21889.1|  Os07g0558400 [Oryza sativa (japonica cultivar-group)]
Length=290

 Score = 64.3 bits (155),  Expect = 1e-10
 Identities = 30/37 (81%), Positives = 33/37 (89%), Gaps = 0/37 (0%)
 Frame = -1

Query  137  QYELDSLDQNLAKNVAGEIIGTRTEVSDVKATPFQPY  27
            Q+ELDSLDQNLAKN AGEIIGTR E  +VK+TPFQPY
Sbjct  90   QFELDSLDQNLAKNNAGEIIGTRFETGEVKSTPFQPY  126


>gi|445116|prf||1908421A  light-harvesting complex IIa protein;
Length=286

 Score = 64.3 bits (155),  Expect = 1e-10
 Identities = 29/37 (78%), Positives = 35/37 (94%), Gaps = 0/37 (0%)
 Frame = -1

Query  137  QYELDSLDQNLAKNVAGEIIGTRTEVSDVKATPFQPY  27
            QY++DSLDQNLA+N+AGEIIGTR E +DVK+TPFQPY
Sbjct  87   QYDVDSLDQNLAQNLAGEIIGTRFEDADVKSTPFQPY  123


>gi|30680697|ref|NP_850545.1|  LHCB4.2; chlorophyll binding [Arabidopsis thaliana]
Length=227

 Score = 63.2 bits (152),  Expect = 3e-10
 Identities = 28/37 (75%), Positives = 33/37 (89%), Gaps = 0/37 (0%)
 Frame = -1

Query  137  QYELDSLDQNLAKNVAGEIIGTRTEVSDVKATPFQPY  27
            Q++LDSLDQNLAKN+ GE+IGTRTE  D K+TPFQPY
Sbjct  88   QFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPY  124


>gi|15231990|ref|NP_187506.1|  LHCB4.2 [Arabidopsis thaliana]
 gi|38503262|sp|Q9XF88|CB4B_ARATH  Chlorophyll a-b binding protein CP29.2, chloroplast precursor 
(LHCII protein 4.2) (LHCB4.2)
 gi|4741954|gb|AAD28774.1|AF134127_1  Lhcb4.2 protein [Arabidopsis thaliana]
 gi|6403491|gb|AAF07831.1|AC010871_7  putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
 gi|17473745|gb|AAL38316.1|  putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
 gi|20148559|gb|AAM10170.1|  putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length=287

 Score = 63.2 bits (152),  Expect = 3e-10
 Identities = 28/37 (75%), Positives = 33/37 (89%), Gaps = 0/37 (0%)
 Frame = -1

Query  137  QYELDSLDQNLAKNVAGEIIGTRTEVSDVKATPFQPY  27
            Q++LDSLDQNLAKN+ GE+IGTRTE  D K+TPFQPY
Sbjct  88   QFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPY  124


>gi|2326947|emb|CAA90681.1|  Chlorophyll a/b-binding protein CP29 precursor [Zea mays]
Length=291

 Score = 60.5 bits (145),  Expect = 2e-09
 Identities = 29/37 (78%), Positives = 32/37 (86%), Gaps = 0/37 (0%)
 Frame = -1

Query  137  QYELDSLDQNLAKNVAGEIIGTRTEVSDVKATPFQPY  27
            Q+ELDSLDQNLAKN AG IIGTR E S+VK+TP QPY
Sbjct  91   QFELDSLDQNLAKNEAGGIIGTRFESSEVKSTPLQPY  127


>gi|15225630|ref|NP_181539.1|  LHCB4.3; chlorophyll binding [Arabidopsis thaliana]
 gi|38503231|sp|Q9S7W1|CB4C_ARATH  Chlorophyll a-b binding protein CP29.3, chloroplast precursor 
(LHCII protein 4.3) (LHCB4.3)
 gi|4741956|gb|AAD28775.1|AF134128_1  Lhcb4:3 protein [Arabidopsis thaliana]
 gi|4895259|gb|AAD32843.1|AC007658_2  putative chlorophyll a/b binding protein [Arabidopsis thaliana]
 gi|17979325|gb|AAL49888.1|  putative chlorophyll a/b binding protein [Arabidopsis thaliana]
 gi|20465761|gb|AAM20369.1|  putative chlorophyll a/b binding protein [Arabidopsis thaliana]
Length=276

 Score = 57.8 bits (138),  Expect = 1e-08
 Identities = 26/37 (70%), Positives = 30/37 (81%), Gaps = 0/37 (0%)
 Frame = -1

Query  137  QYELDSLDQNLAKNVAGEIIGTRTEVSDVKATPFQPY  27
            QY+ D LDQNLAKNVAG+IIG   E S++K TPFQPY
Sbjct  92   QYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPY  128


>gi|21594018|gb|AAM65936.1|  putative chlorophyll a/b binding protein [Arabidopsis thaliana]
Length=276

 Score = 54.7 bits (130),  Expect = 1e-07
 Identities = 25/37 (67%), Positives = 29/37 (78%), Gaps = 0/37 (0%)
 Frame = -1

Query  137  QYELDSLDQNLAKNVAGEIIGTRTEVSDVKATPFQPY  27
            QY+   LDQNLAKNVAG+IIG   E S++K TPFQPY
Sbjct  92   QYDXXGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPY  128


>gi|957271|gb|AAB34049.1|  chlorophyll a/b protein CP29, photosystem II subunit CP29 [Zea 
mays=maize, seedlings, Peptide Chloroplast Partial, 32 aa, 
segment 2 of 3]
Length=32

 Score = 33.9 bits (76),  Expect = 0.17
 Identities = 16/24 (66%), Positives = 17/24 (70%), Gaps = 0/24 (0%)
 Frame = -1

Query  98  NVAGEIIGTRTEVSDVKATPFQPY  27
           N AG IIG   E SDVK+TP QPY
Sbjct  1   NEAGGIIGRXFESSDVKSTPLQPY  24


>gi|1362191|pir||A56376  chlorophyll a/b-binding protein CP29 - maize (fragments)
Length=72

 Score = 33.9 bits (76),  Expect = 0.17
 Identities = 16/24 (66%), Positives = 17/24 (70%), Gaps = 0/24 (0%)
 Frame = -1

Query  98  NVAGEIIGTRTEVSDVKATPFQPY  27
           N AG IIG   E SDVK+TP QPY
Sbjct  21  NEAGGIIGRXFESSDVKSTPLQPY  44


>gi|63029289|gb|AAY27543.1|  chloroplast chlorophyll a/b-binding protein CP29 precursor Lhcb4 
[Ostreococcus tauri]
 gi|116055585|emb|CAL58253.1|  CP29-like light-harvesting chlorophyll a/b binding protein chlor 
(IC) [Ostreococcus tauri]
Length=257

 Score = 29.3 bits (64),  Expect = 4.3
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -1

Query  137  QYELDSLDQNLAKNVAGEIIGTRTEV-SDVKATPFQPY  27
            Q++LD+LD + A+N +G +IG   +  S  KA    PY
Sbjct  76   QFDLDALDGSAARNPSGNVIGKLKKADSKPKARTIVPY  113

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 97
Number of extensions: 0
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 137
Length of database: 101054579
Length adjustment: 19
Effective length of query: 118
Effective length of database: 95670948
Effective search space: 2487444648
Effective search space used: 2487444648
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 61 (28.1 bits)