RID=1168938277-21526-50328262349.BLASTQ4, Contig212

Alignments
 

>gi|133872|sp|P29344|RR1_SPIOL  30S ribosomal protein S1, chloroplast precursor (CS1)
 gi|18060|emb|CAA46927.1|  ribosomal protein S1 [Spinacia oleracea]
 gi|170143|gb|AAA34045.1|  chloroplast ribosomal protein S1
Length=411

 Score =  390 bits (1003),  Expect = 2e-108
 Identities = 204/217 (94%), Positives = 207/217 (95%), Gaps = 0/217 (0%)
 Frame = -3

Query  668  NKGGVVALVEGLRGFVPFSQISSKPPAEELLDKEIPLKFVEVDEEQSRLVLSNRKAMADS  489
            NKGGVVALVEGLRGFVPFSQISSK  AEELL+KEIPLKFVEVDEEQSRLV+SNRKAMADS
Sbjct  195  NKGGVVALVEGLRGFVPFSQISSKSSAEELLEKEIPLKFVEVDEEQSRLVMSNRKAMADS  254

Query  488  QAQLGIGSVALGNVQSLKPYGAFIDIGGINGLLHVSQISHDRVSDIATVLQPGDTLKVMI  309
            QAQLGIGSV  G VQSLKPYGAFIDIGGINGLLHVSQISHDRVSDIATVLQPGDTLKVMI
Sbjct  255  QAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVSDIATVLQPGDTLKVMI  314

Query  308  LSHDRERGRVSLSTKKLEPTPGDMIRNPTLVFEKAEEMAQTFRQRIAQAEAMARADMLRF  129
            LSHDRERGRVSLSTKKLEPTPGDMIRNP LVFEKAEEMAQTFRQRIAQAEAMARADMLRF
Sbjct  315  LSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRF  374

Query  128  QPESGLTLSSDGILGPLTSDLPAEGLDLSDVPEGEDS  18
            QPESGLTLSSDGILGPLTSDLPAEGLDLS VP   +S
Sbjct  375  QPESGLTLSSDGILGPLTSDLPAEGLDLSVVPPAVES  411


>gi|30692346|ref|NP_850903.1|  RNA binding / structural constituent of ribosome [Arabidopsis 
thaliana]
 gi|13877939|gb|AAK44047.1|AF370232_1  putative ribosomal protein S1 [Arabidopsis thaliana]
 gi|16649089|gb|AAL24396.1|  Unknown protein [Arabidopsis thaliana]
 gi|21593804|gb|AAM65771.1|  ribosomal protein S1 [Arabidopsis thaliana]
 gi|23296539|gb|AAN13122.1|  putative ribosomal protein S1 [Arabidopsis thaliana]
Length=416

 Score =  374 bits (961),  Expect = 1e-103
 Identities = 195/218 (89%), Positives = 206/218 (94%), Gaps = 2/218 (0%)
 Frame = -3

Query  668  NKGGVVALVEGLRGFVPFSQISSKPPAEELLDKEIPLKFVEVDEEQSRLVLSNRKAMADS  489
            NKGG+VALVEGLRGFVPFSQISSK  AEELL+KEIPLKFVEVDEEQ++LVLSNRKA+ADS
Sbjct  198  NKGGLVALVEGLRGFVPFSQISSKAAAEELLEKEIPLKFVEVDEEQTKLVLSNRKAVADS  257

Query  488  QAQLGIGSVALGNVQSLKPYGAFIDIGGINGLLHVSQISHDRVSDIATVLQPGDTLKVMI  309
            QAQLGIGSV LG VQSLKPYGAFIDIGGINGLLHVSQISHDRVSDIATVLQPGDTLKVMI
Sbjct  258  QAQLGIGSVVLGVVQSLKPYGAFIDIGGINGLLHVSQISHDRVSDIATVLQPGDTLKVMI  317

Query  308  LSHDRERGRVSLSTKKLEPTPGDMIRNPTLVFEKAEEMAQTFRQRIAQAEAMARADMLRF  129
            LSHDR+RGRVSLSTKKLEPTPGDMIRNP LVFEKAEEMAQTFRQRIAQAEAMARADMLRF
Sbjct  318  LSHDRDRGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRF  377

Query  128  QPESGLTLSSDGILGPLTSDLPAEGLDLS--DVPEGED  21
            QPESGLTLSSDGILGPL S+LP +G+DL+  D+P   D
Sbjct  378  QPESGLTLSSDGILGPLGSELPDDGVDLTVDDIPSAVD  415


>gi|115452675|ref|NP_001049938.1|  Os03g0315800 [Oryza sativa (japonica cultivar-group)]
 gi|113548409|dbj|BAF11852.1|  Os03g0315800 [Oryza sativa (japonica cultivar-group)]
Length=390

 Score =  367 bits (941),  Expect = 3e-101
 Identities = 187/205 (91%), Positives = 197/205 (96%), Gaps = 0/205 (0%)
 Frame = -3

Query  668  NKGGVVALVEGLRGFVPFSQISSKPPAEELLDKEIPLKFVEVDEEQSRLVLSNRKAMADS  489
            NKGGVVALVEGL+GFVPFSQ+SSK  AEELLDKE+PLKFVEVDEEQ RLVLSNRKAMADS
Sbjct  177  NKGGVVALVEGLKGFVPFSQVSSKSTAEELLDKELPLKFVEVDEEQGRLVLSNRKAMADS  236

Query  488  QAQLGIGSVALGNVQSLKPYGAFIDIGGINGLLHVSQISHDRVSDIATVLQPGDTLKVMI  309
            QAQLGIGSV LG V+SLKPYGAFIDIGGINGLLHVSQISHDRV+DI+TVLQPGDTLKVMI
Sbjct  237  QAQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMI  296

Query  308  LSHDRERGRVSLSTKKLEPTPGDMIRNPTLVFEKAEEMAQTFRQRIAQAEAMARADMLRF  129
            LSHDRERGRVSLSTKKLEPTPGDMIRNP LVFEKA+EMAQ FRQRIAQAEAMARADMLRF
Sbjct  297  LSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKADEMAQIFRQRIAQAEAMARADMLRF  356

Query  128  QPESGLTLSSDGILGPLTSDLPAEG  54
            QPESGLTLSS+GILGPL+SD P+EG
Sbjct  357  QPESGLTLSSEGILGPLSSDTPSEG  381


>gi|108707824|gb|ABF95619.1|  30S ribosomal protein S1, chloroplast precursor, putative, expressed 
[Oryza sativa (japonica cultivar-group)]
Length=402

 Score =  367 bits (941),  Expect = 3e-101
 Identities = 187/205 (91%), Positives = 197/205 (96%), Gaps = 0/205 (0%)
 Frame = -3

Query  668  NKGGVVALVEGLRGFVPFSQISSKPPAEELLDKEIPLKFVEVDEEQSRLVLSNRKAMADS  489
            NKGGVVALVEGL+GFVPFSQ+SSK  AEELLDKE+PLKFVEVDEEQ RLVLSNRKAMADS
Sbjct  189  NKGGVVALVEGLKGFVPFSQVSSKSTAEELLDKELPLKFVEVDEEQGRLVLSNRKAMADS  248

Query  488  QAQLGIGSVALGNVQSLKPYGAFIDIGGINGLLHVSQISHDRVSDIATVLQPGDTLKVMI  309
            QAQLGIGSV LG V+SLKPYGAFIDIGGINGLLHVSQISHDRV+DI+TVLQPGDTLKVMI
Sbjct  249  QAQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMI  308

Query  308  LSHDRERGRVSLSTKKLEPTPGDMIRNPTLVFEKAEEMAQTFRQRIAQAEAMARADMLRF  129
            LSHDRERGRVSLSTKKLEPTPGDMIRNP LVFEKA+EMAQ FRQRIAQAEAMARADMLRF
Sbjct  309  LSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKADEMAQIFRQRIAQAEAMARADMLRF  368

Query  128  QPESGLTLSSDGILGPLTSDLPAEG  54
            QPESGLTLSS+GILGPL+SD P+EG
Sbjct  369  QPESGLTLSSEGILGPLSSDTPSEG  393


>gi|108707823|gb|ABF95618.1|  30S ribosomal protein S1, chloroplast precursor, putative, expressed 
[Oryza sativa (japonica cultivar-group)]
Length=380

 Score =  313 bits (803),  Expect = 3e-85
 Identities = 167/205 (81%), Positives = 175/205 (85%), Gaps = 22/205 (10%)
 Frame = -3

Query  668  NKGGVVALVEGLRGFVPFSQISSKPPAEELLDKEIPLKFVEVDEEQSRLVLSNRKAMADS  489
            NKGGVVALVEGL+GFVPFSQ+SSK  AEELLDKE+PLKFVEVDEEQ RLVLSNRKAMADS
Sbjct  189  NKGGVVALVEGLKGFVPFSQVSSKSTAEELLDKELPLKFVEVDEEQGRLVLSNRKAMADS  248

Query  488  QAQLGIGSVALGNVQSLKPYGAFIDIGGINGLLHVSQISHDRVSDIATVLQPGDTLKVMI  309
            QAQLGIGSV LG V+SLKPYGAFIDI                      VLQPGDTLKVMI
Sbjct  249  QAQLGIGSVVLGTVESLKPYGAFIDI----------------------VLQPGDTLKVMI  286

Query  308  LSHDRERGRVSLSTKKLEPTPGDMIRNPTLVFEKAEEMAQTFRQRIAQAEAMARADMLRF  129
            LSHDRERGRVSLSTKKLEPTPGDMIRNP LVFEKA+EMAQ FRQRIAQAEAMARADMLRF
Sbjct  287  LSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKADEMAQIFRQRIAQAEAMARADMLRF  346

Query  128  QPESGLTLSSDGILGPLTSDLPAEG  54
            QPESGLTLSS+GILGPL+SD P+EG
Sbjct  347  QPESGLTLSSEGILGPLSSDTPSEG  371


>gi|40641370|emb|CAE51165.1|  ribosomal protein S1 homologue [Chlamydomonas reinhardtii]
Length=436

 Score =  188 bits (478),  Expect = 1e-47
 Identities = 104/192 (54%), Positives = 133/192 (69%), Gaps = 9/192 (4%)
 Frame = -3

Query  668  NKGGVVALVEGLRGFVPFSQIS---SKPPAEELLDKEIPLKFVEVDEEQSRLVLSNRKAM  498
            NKGG++       GF+P SQ     +    E L+  E+ +KF+EVDEE  RLV S+++A 
Sbjct  239  NKGGMLVKFGIYDGFIPVSQFGPSITPDNMESLVGFELQVKFLEVDEEAERLVFSHKRAS  298

Query  497  ADSQAQLG---IGSVALGNVQSLKPYGAFIDIGGINGLLHVSQISHDRVSDIATVLQPGD  327
            +     +    +G V  G VQS+KPYGAFID+GG+ GLLHVSQISHDRV  +  +LQ GD
Sbjct  299  STVSNDIQGFKVGDVVAGVVQSVKPYGAFIDLGGVTGLLHVSQISHDRVLVLDKILQEGD  358

Query  326  TLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPTLVFEKAEEMAQTFRQRI---AQAEA  156
             +KVMILS DRERGRV+LSTKKLEPTPGDM+R+P LV+EKAEEMA+ FR+R+   AQ+ A
Sbjct  359  KIKVMILSQDRERGRVTLSTKKLEPTPGDMLRDPQLVYEKAEEMAEQFRKRVEQAAQSAA  418

Query  155  MARADMLRFQPE  120
              + D L   PE
Sbjct  419  EPQPDTLGAAPE  430


>gi|116061865|emb|CAL52583.1|  30S ribosomal protein S1 (ISS) [Ostreococcus tauri]
Length=250

 Score =  183 bits (464),  Expect = 6e-46
 Identities = 94/174 (54%), Positives = 129/174 (74%), Gaps = 2/174 (1%)
 Frame = -3

Query  668  NKGGVVALVEGLRGFVPFSQISSKP-PAEELLDKEIPLKFVEVDEEQSRLVLSNRKAMAD  492
            N+GG++  VE LRGFVP S I  +    EEL+ +++P KF+EVDEE++RLVLS+R A   
Sbjct  68   NRGGLLVEVEKLRGFVPQSHIGIRTLNREELVGQQLPFKFIEVDEEKNRLVLSHRLATDM  127

Query  491  SQAQ-LGIGSVALGNVQSLKPYGAFIDIGGINGLLHVSQISHDRVSDIATVLQPGDTLKV  315
              A+ L +G V  G VQ++KPYGAF+D+GG +GLLH+SQISH+R+  +  VL  GD +KV
Sbjct  128  VSAEGLEVGDVVEGMVQAVKPYGAFVDVGGQSGLLHISQISHERIVAVENVLSAGDRIKV  187

Query  314  MILSHDRERGRVSLSTKKLEPTPGDMIRNPTLVFEKAEEMAQTFRQRIAQAEAM  153
            +++S D ERGR+SLSTKKLE   GDM+RNP+ VFE AEEM + FR+++  AE +
Sbjct  188  LVMSKDAERGRLSLSTKKLEQNHGDMLRNPSAVFETAEEMGRQFREKMQAAEGV  241


>gi|117662841|gb|ABK55725.1|  chloroplast ribosomal protein S1 [Cucumis sativus]
Length=99

 Score =  155 bits (392),  Expect = 1e-37
 Identities = 80/89 (89%), Positives = 83/89 (93%), Gaps = 0/89 (0%)
 Frame = -3

Query  668  NKGGVVALVEGLRGFVPFSQISSKPPAEELLDKEIPLKFVEVDEEQSRLVLSNRKAMADS  489
            NKGGVVA+VEGLRGFVPFSQIS+K  AEELL KE+PLKFVEVDEEQSRLVLSNRKAMADS
Sbjct  11   NKGGVVAVVEGLRGFVPFSQISTKSNAEELLSKELPLKFVEVDEEQSRLVLSNRKAMADS  70

Query  488  QAQLGIGSVALGNVQSLKPYGAFIDIGGI  402
            QAQLGIGSV  G VQSLKPYGAFIDIGGI
Sbjct  71   QAQLGIGSVVTGTVQSLKPYGAFIDIGGI  99


>gi|47900418|gb|AAT39212.1|  putative 30S ribosomal protein S1 [Oryza sativa (japonica cultivar-group)]
Length=590

 Score =  109 bits (272),  Expect = 1e-23
 Identities = 64/182 (35%), Positives = 106/182 (58%), Gaps = 9/182 (4%)
 Frame = -3

Query  668  NKGGVVALVEGLRGFVPFSQISSKP----PAEELLDKEIPLKFVEVDEEQSRLVLSNRKA  501
            N GG++  +EGLR F+P  ++ ++P      +  + ++I +    +DE+ + L++S ++A
Sbjct  287  NAGGLLTRIEGLRAFLPKPEMMTRPRNFTDLKNTVGQQIHVCITRIDEKANELIISEKEA  346

Query  500  MADSQAQLGIGSVALGNVQSLKPYGAFIDIGGIN--GLLHVSQISHDRVSDIATVLQPGD  327
             A     L  G++  G V+ L PYGA I IG  N  GLLHVS I+  +++ +  VL+ G+
Sbjct  347  WA--MTYLREGTLLQGTVRKLFPYGAQITIGDTNRGGLLHVSNITRGQLTSVGDVLKVGE  404

Query  326  TLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPTLVFEKAEEMAQTFRQRIAQAEAMAR  147
             +K +++      GR++LSTK LE  PG  + N   VF +AEEMAQ +R +I++    A 
Sbjct  405  EVKAIVIKSTAP-GRIALSTKDLESEPGLFLSNKEKVFSEAEEMAQRYRDQISEKHQPAE  463

Query  146  AD  141
             D
Sbjct  464  LD  465


>gi|115465119|ref|NP_001056159.1|  Os05g0535800 [Oryza sativa (japonica cultivar-group)]
 gi|113579710|dbj|BAF18073.1|  Os05g0535800 [Oryza sativa (japonica cultivar-group)]
Length=592

 Score =  101 bits (252),  Expect = 2e-21
 Identities = 64/192 (33%), Positives = 106/192 (55%), Gaps = 19/192 (9%)
 Frame = -3

Query  668  NKGGVVALVEGLRGFVPFSQISSKP----PAEELLDKEIPLKFVEVDEEQSRLVLSNRKA  501
            N GG++  +EGLR F+P  ++ ++P      +  + ++I +    +DE+ + L++S ++A
Sbjct  298  NAGGLLTRIEGLRAFLPKPEMMTRPRNFTDLKNTVGQQIHVCITRIDEKANELIISEKEA  357

Query  500  MADSQAQLGIGSVALGNVQSLKPYGAFIDIGGIN--GLLHVSQISHDRVSDIATVLQPGD  327
             A     L  G++  G V+ L PYGA I IG  N  GLLHVS I+  +++ +  VL+ G+
Sbjct  358  WA--MTYLREGTLLQGTVRKLFPYGAQITIGDTNRGGLLHVSNITRGQLTSVGDVLKVGE  415

Query  326  TLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNP----------TLVFEKAEEMAQTFRQ  177
             +K +++      GR++LSTK LE  PG  + N             VF +AEEMAQ +R 
Sbjct  416  EVKAIVIK-STAPGRIALSTKDLESEPGLFLSNKEWDGEYTDVNNKVFSEAEEMAQRYRD  474

Query  176  RIAQAEAMARAD  141
            +I++    A  D
Sbjct  475  QISEKHQPAELD  486


>gi|18403854|ref|NP_566737.1|  RNA binding [Arabidopsis thaliana]
 gi|9293944|dbj|BAB01847.1|  unnamed protein product [Arabidopsis thaliana]
 gi|15146284|gb|AAK83625.1|  AT3g23700/MYM9_3 [Arabidopsis thaliana]
 gi|22655022|gb|AAM98102.1|  At3g23700/MYM9_3 [Arabidopsis thaliana]
Length=392

 Score = 96.7 bits (239),  Expect = 7e-20
 Identities = 57/159 (35%), Positives = 94/159 (59%), Gaps = 18/159 (11%)
 Frame = -3

Query  668  NKGGVVALVEGLRGFVPFSQISS----KPP-------AEELLDKEIPLKFVEVDEEQSRL  522
            N GG++     L GF+P+ Q+S     K P       A+ L+  ++P+K V+ DEE  +L
Sbjct  118  NGGGLLIRFHSLVGFLPYPQLSPSRSCKEPQKSIHEIAKTLVGSKLPVKVVQADEENRKL  177

Query  521  VLSNRKAMADSQAQ-LGIGSVALGNVQSLKPYGAFIDIG------GINGLLHVSQISHDR  363
            +LS + A+    +Q + +G V  G V S++ YGAFI +        + GL+HVS++S D 
Sbjct  178  ILSEKLALWPKYSQNVNVGDVFNGRVGSVEDYGAFIHLRFDDGLYHLTGLVHVSEVSWDY  237

Query  362  VSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP  246
            V D+  VL+ GD ++V++ + D+E+ R++LS K+LE  P
Sbjct  238  VQDVRDVLRDGDEVRVIVTNIDKEKSRITLSIKQLEDDP  276


>gi|115438028|ref|NP_001043440.1|  Os01g0589000 [Oryza sativa (japonica cultivar-group)]
 gi|53792249|dbj|BAD52882.1|  30S ribosomal protein S1-like [Oryza sativa (japonica cultivar-group)]
 gi|113532971|dbj|BAF05354.1|  Os01g0589000 [Oryza sativa (japonica cultivar-group)]
Length=438

 Score = 93.2 bits (230),  Expect = 8e-19
 Identities = 66/219 (30%), Positives = 113/219 (51%), Gaps = 22/219 (10%)
 Frame = -3

Query  668  NKGGVVALVEGLRGFVP----FSQISSKPPAEELLDKEIPLKFVEVDEEQSRLVLSNRKA  501
            N GG++  +EGLR F+P      +I++    +  +   I +    +DEE + L++S +KA
Sbjct  219  NTGGLLTRIEGLRAFLPKFELMDRINTFTDLKNKVGCSIRVCITRLDEETNDLIISEKKA  278

Query  500  MADSQAQLGIGSVALGNVQSLKPYGAFIDIGGIN--GLLHVSQISHDRVSDIATVLQPGD  327
                   L  G++  G V  + PYGA + I G N  GLLH+S IS  RV  ++ +L+  +
Sbjct  279  W--EMTYLKEGTLLQGIVHKIFPYGAQVRIAGTNRSGLLHISNISRGRVLSVSDILKIDE  336

Query  326  TLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPTLVFEKAEEMAQTFRQRIAQAEAMAR  147
             +KV+++  +    +++LS   LE TPG  +     VF +AEEMA+ +R+++      A+
Sbjct  337  EVKVLVVKSNVP-DKIALSISDLESTPGLFLSEKARVFSEAEEMAERYREQLPADSKNAK  395

Query  146  AD------MLRFQPESGLTLS-------SDGILGPLTSD  69
             D       + F  E+ L  +        DG LG +T++
Sbjct  396  LDADLPGGTIPFDDEATLYANWKWFKFLEDGKLGAVTTE  434


>gi|41469635|gb|AAS07358.1|  putative ribosomal S1 protein (with alternative splicing) [Oryza 
sativa (japonica cultivar-group)]
 gi|108712065|gb|ABF99860.1|  S1 RNA binding domain containing protein, expressed [Oryza sativa 
(japonica cultivar-group)]
Length=379

 Score = 87.0 bits (214),  Expect = 6e-17
 Identities = 55/159 (34%), Positives = 90/159 (56%), Gaps = 18/159 (11%)
 Frame = -3

Query  668  NKGGVVALVEGLRGFVPFSQISS----KPP-------AEELLDKEIPLKFVEVDEEQSRL  522
            N GG++     L+GFVP   +S     K P        ++L+   I +K VEV+EE+ +L
Sbjct  102  NSGGLIVRFNSLQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSISVKVVEVNEEERKL  161

Query  521  VLSNRKAMADSQAQL-GIGSVALGNVQSLKPYGAFIDIG------GINGLLHVSQISHDR  363
            V S + A   + + L  IG++  G V S+  YGAF+ +        + GL+H+S++S D 
Sbjct  162  VFSEKDASWFTHSSLVKIGAIYDGIVGSVFHYGAFVHLRFPDGNYHLTGLVHISEVSWDL  221

Query  362  VSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP  246
            V D+   L  GDT+KV++++ D E+ R++LS ++LE  P
Sbjct  222  VQDVRDFLNEGDTVKVIVVNIDMEKSRIALSIRQLEEDP  260


>gi|115456549|ref|NP_001051875.1|  Os03g0844900 [Oryza sativa (japonica cultivar-group)]
 gi|41469634|gb|AAS07357.1|  putative ribosomal S1 protein (with alternative splicing) [Oryza 
sativa (japonica cultivar-group)]
 gi|108712064|gb|ABF99859.1|  S1 RNA binding domain containing protein, expressed [Oryza sativa 
(japonica cultivar-group)]
 gi|113550346|dbj|BAF13789.1|  Os03g0844900 [Oryza sativa (japonica cultivar-group)]
Length=339

 Score = 87.0 bits (214),  Expect = 6e-17
 Identities = 55/159 (34%), Positives = 90/159 (56%), Gaps = 18/159 (11%)
 Frame = -3

Query  668  NKGGVVALVEGLRGFVPFSQISS----KPP-------AEELLDKEIPLKFVEVDEEQSRL  522
            N GG++     L+GFVP   +S     K P        ++L+   I +K VEV+EE+ +L
Sbjct  102  NSGGLIVRFNSLQGFVPNPLLSPAHWCKDPKRPIQDVTKDLVGSSISVKVVEVNEEERKL  161

Query  521  VLSNRKAMADSQAQL-GIGSVALGNVQSLKPYGAFIDIG------GINGLLHVSQISHDR  363
            V S + A   + + L  IG++  G V S+  YGAF+ +        + GL+H+S++S D 
Sbjct  162  VFSEKDASWFTHSSLVKIGAIYDGIVGSVFHYGAFVHLRFPDGNYHLTGLVHISEVSWDL  221

Query  362  VSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP  246
            V D+   L  GDT+KV++++ D E+ R++LS ++LE  P
Sbjct  222  VQDVRDFLNEGDTVKVIVVNIDMEKSRIALSIRQLEEDP  260


>gi|15217547|ref|NP_177317.1|  RNA binding [Arabidopsis thaliana]
Length=487

 Score = 87.0 bits (214),  Expect = 6e-17
 Identities = 53/168 (31%), Positives = 96/168 (57%), Gaps = 14/168 (8%)
 Frame = -3

Query  668  NKGGVVALVEGLRGFVPFSQISSKPPAEELLDKEIPLKFVEVDEEQSRLVLSNRKAMADS  489
            N GG++  +EGLR F+P          +EL+ +   ++   ++E+++ L+LS + A    
Sbjct  294  NTGGLLTRIEGLRAFIP---------KQELVGRRFLVQITRLNEDKNDLILSEKVAW--E  342

Query  488  QAQLGIGSVALGNVQSLKPYGAFIDIGGIN--GLLHVSQISHDRVSDIATVLQPGDTLKV  315
            +  L  G++  G V  + PYGA + +G  +  GLLH+S I+  R+  ++ VLQ  +++KV
Sbjct  343  KLYLREGTLLEGTVVKILPYGAQVKLGDSSRSGLLHISNITRRRIGSVSDVLQVDESVKV  402

Query  314  MILSHDRERGRVSLSTKKLEPTPGDMIRNPTLVFEKAEEMAQTFRQRI  171
            +++       ++SLS   LE  PG  I +   VF +AEEMA+ +R+++
Sbjct  403  LVVK-SLFPDKISLSIADLESEPGLFISDREKVFTEAEEMAKKYREKM  449


>gi|7239499|gb|AAF43225.1|AC012654_9  Contains S1 RNA binding domain PF|00575.  EST gb|AI997850 comes 
from this gene. [Arabidopsis thaliana]
Length=500

 Score = 86.7 bits (213),  Expect = 7e-17
 Identities = 54/172 (31%), Positives = 98/172 (56%), Gaps = 9/172 (5%)
 Frame = -3

Query  668  NKGGVVALVEGLRGFVPFSQISSKPPAEELLDKEIPLKFV----EVDEEQSRLVLSNRKA  501
            N GG++  +EGLR F+P  ++  K      L + +  +F+     ++E+++ L+LS + A
Sbjct  294  NTGGLLTRIEGLRAFIPKQELVKKVNTFTELKENVGRRFLVQITRLNEDKNDLILSEKVA  353

Query  500  MADSQAQLGIGSVALGNVQSLKPYGAFIDIGGIN--GLLHVSQISHDRVSDIATVLQPGD  327
                +  L  G++  G V  + PYGA + +G  +  GLLH+S I+  R+  ++ VLQ  +
Sbjct  354  W--EKLYLREGTLLEGTVVKILPYGAQVKLGDSSRSGLLHISNITRRRIGSVSDVLQVDE  411

Query  326  TLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPTLVFEKAEEMAQTFRQRI  171
            ++KV+++       ++SLS   LE  PG  I +   VF +AEEMA+ +R+++
Sbjct  412  SVKVLVVK-SLFPDKISLSIADLESEPGLFISDREKVFTEAEEMAKKYREKM  462


>gi|15241441|ref|NP_196962.1|  3'-5'-exoribonuclease/ RNA binding / nucleic acid binding [Arabidopsis 
thaliana]
 gi|4971998|emb|CAB43864.1|  polynucleotide phosphorylase [Arabidopsis thaliana]
 gi|4972000|emb|CAB43865.1|  polynucleotide phosphorylase [Arabidopsis thaliana]
 gi|7573307|emb|CAB87625.1|  polynucleotide phosphorylase [Arabidopsis thaliana]
Length=991

 Score = 67.4 bits (163),  Expect = 5e-11
 Identities = 41/111 (36%), Positives = 59/111 (53%), Gaps = 10/111 (9%)
 Frame = -3

Query  551  VEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVALGNVQSLKPYGAFIDI-GGIN  399
            + +D     +V  N+  M  +Q Q        L +G V  G V S+K YGAF++  GG  
Sbjct  643  LSIDNGTLTIVAKNQDVMEKAQEQVDFIIGRELVVGGVYKGTVSSIKEYGAFVEFPGGQQ  702

Query  398  GLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP  246
            GLLH+S++SH+ VS ++ VL  G  +  M +  D  RG + LS K L P P
Sbjct  703  GLLHMSELSHEPVSKVSDVLDIGQCITTMCIETD-VRGNIKLSRKALLPKP  752


>gi|6671953|gb|AAF23213.1|AC016795_26  putative pre-rRNA processing protein, 5' partial [Arabidopsis 
thaliana]
Length=1111

 Score = 63.5 bits (153),  Expect = 7e-10
 Identities = 44/155 (28%), Positives = 76/155 (49%), Gaps = 9/155 (5%)
 Frame = -3

Query  482  QLGIGSVALGNVQSLKPYGAFIDIG--GINGLLHVSQISHDRVSDIATVLQPGDTLKVMI  309
            +L +G +  G ++ ++P+G FIDI   G+ GL H+SQ+S DR+ ++    + G++++  I
Sbjct  646  KLHVGDMISGRIRRVEPFGLFIDIDQTGMVGLCHISQLSDDRMENVQARYKAGESVRAKI  705

Query  308  LSHDRERGRVSLSTKKLEPTPGDMIRNPTLVFEKAEEMAQTFRQRIAQAEAMARADMLRF  129
            L  D E+ R+SL  K      GD  +   L  +              ++E +A  D   F
Sbjct  706  LKLDEEKKRISLGMKSSYLMNGDDDKAQPLSEDNTSMECDPIND--PKSEVLAAVDDFGF  763

Query  128  QPESGLTLSSDGILGPLTS--DLPAEGLDLSDVPE  30
            Q  SG    +  +L  + S   +P   +DL D+ E
Sbjct  764  QETSG---GTSLVLAQVESRASIPPLEVDLDDIEE  795


>gi|15229915|ref|NP_187803.1|  RNA binding / structural constituent of ribosome [Arabidopsis 
thaliana]
Length=1838

 Score = 63.5 bits (153),  Expect = 7e-10
 Identities = 44/155 (28%), Positives = 76/155 (49%), Gaps = 9/155 (5%)
 Frame = -3

Query  482   QLGIGSVALGNVQSLKPYGAFIDIG--GINGLLHVSQISHDRVSDIATVLQPGDTLKVMI  309
             +L +G +  G ++ ++P+G FIDI   G+ GL H+SQ+S DR+ ++    + G++++  I
Sbjct  1373  KLHVGDMISGRIRRVEPFGLFIDIDQTGMVGLCHISQLSDDRMENVQARYKAGESVRAKI  1432

Query  308   LSHDRERGRVSLSTKKLEPTPGDMIRNPTLVFEKAEEMAQTFRQRIAQAEAMARADMLRF  129
             L  D E+ R+SL  K      GD  +   L  +              ++E +A  D   F
Sbjct  1433  LKLDEEKKRISLGMKSSYLMNGDDDKAQPLSEDNTSMECDPIND--PKSEVLAAVDDFGF  1490

Query  128   QPESGLTLSSDGILGPLTS--DLPAEGLDLSDVPE  30
             Q  SG    +  +L  + S   +P   +DL D+ E
Sbjct  1491  QETSG---GTSLVLAQVESRASIPPLEVDLDDIEE  1522


>gi|10998136|dbj|BAB03107.1|  pre-rRNA processing protein RRP5 [Arabidopsis thaliana]
Length=1765

 Score = 63.5 bits (153),  Expect = 7e-10
 Identities = 44/155 (28%), Positives = 76/155 (49%), Gaps = 9/155 (5%)
 Frame = -3

Query  482   QLGIGSVALGNVQSLKPYGAFIDIG--GINGLLHVSQISHDRVSDIATVLQPGDTLKVMI  309
             +L +G +  G ++ ++P+G FIDI   G+ GL H+SQ+S DR+ ++    + G++++  I
Sbjct  1300  KLHVGDMISGRIRRVEPFGLFIDIDQTGMVGLCHISQLSDDRMENVQARYKAGESVRAKI  1359

Query  308   LSHDRERGRVSLSTKKLEPTPGDMIRNPTLVFEKAEEMAQTFRQRIAQAEAMARADMLRF  129
             L  D E+ R+SL  K      GD  +   L  +              ++E +A  D   F
Sbjct  1360  LKLDEEKKRISLGMKSSYLMNGDDDKAQPLSEDNTSMECDPIND--PKSEVLAAVDDFGF  1417

Query  128   QPESGLTLSSDGILGPLTS--DLPAEGLDLSDVPE  30
             Q  SG    +  +L  + S   +P   +DL D+ E
Sbjct  1418  QETSG---GTSLVLAQVESRASIPPLEVDLDDIEE  1449


>gi|115447329|ref|NP_001047444.1|  Os02g0617700 [Oryza sativa (japonica cultivar-group)]
 gi|113536975|dbj|BAF09358.1|  Os02g0617700 [Oryza sativa (japonica cultivar-group)]
Length=322

 Score = 61.6 bits (148),  Expect = 3e-09
 Identities = 45/153 (29%), Positives = 70/153 (45%), Gaps = 7/153 (4%)
 Frame = -3

Query  482  QLGIGSVALGNVQSLKPYGAFIDI-GGINGLLHVSQISHDRVSDIATVLQPGDTLKVMIL  306
            ++ +G    G V S+K YGAF++  GG  GLLH+S++SHD+VS ++ V+  G  L +  +
Sbjct  25   EIEVGRTYKGVVSSIKEYGAFVEFNGGQQGLLHISELSHDKVSKVSDVVSVGQVLSLTCI  84

Query  305  SHDRERGRVSLSTKKLEP---TPGDMIRNPTLVFEKAEEMAQTFRQRIAQAEAMARADML  135
              D  RG + LS K   P      D+  N T      E +  T  + +   +A A   + 
Sbjct  85   GQDL-RGNIKLSLKATLPHAHEKKDLASNHTDPLPSQEVVGWTAVENMPSKDANAEPSIS  143

Query  134  RFQPESGLTLSSDGILGPLTSDLPAEGLDLSDV  36
            +   E  +   + G   P      A   D  DV
Sbjct  144  K--DEDNMIEETPGCSTPAVIIRSAAECDAQDV  174


>gi|47847669|dbj|BAD21450.1|  putative polyribonucleotide nucleotidyltransferase [Oryza sativa 
(japonica cultivar-group)]
Length=982

 Score = 61.6 bits (148),  Expect = 3e-09
 Identities = 45/153 (29%), Positives = 70/153 (45%), Gaps = 7/153 (4%)
 Frame = -3

Query  482  QLGIGSVALGNVQSLKPYGAFIDI-GGINGLLHVSQISHDRVSDIATVLQPGDTLKVMIL  306
            ++ +G    G V S+K YGAF++  GG  GLLH+S++SHD+VS ++ V+  G  L +  +
Sbjct  685  EIEVGRTYKGVVSSIKEYGAFVEFNGGQQGLLHISELSHDKVSKVSDVVSVGQVLSLTCI  744

Query  305  SHDRERGRVSLSTKKLEP---TPGDMIRNPTLVFEKAEEMAQTFRQRIAQAEAMARADML  135
              D  RG + LS K   P      D+  N T      E +  T  + +   +A A   + 
Sbjct  745  GQDL-RGNIKLSLKATLPHAHEKKDLASNHTDPLPSQEVVGWTAVENMPSKDANAEPSIS  803

Query  134  RFQPESGLTLSSDGILGPLTSDLPAEGLDLSDV  36
            +   E  +   + G   P      A   D  DV
Sbjct  804  K--DEDNMIEETPGCSTPAVIIRSAAECDAQDV  834


>gi|92885758|gb|ABE87905.1|  Peptidase S8 and S53, subtilisin, kexin, sedolisin; Acylphosphatase; 
Transcription termination factor NusA; Polyribonucleotide 
nucleotidyltransferase [Medicago truncatula]
Length=874

 Score = 60.8 bits (146),  Expect = 4e-09
 Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
 Frame = -3

Query  545  VDEEQSRLVLSNRKAMADSQAQLGIGSVALGNVQSLKPYGAFIDI-GGINGLLHVSQISH  369
            V + QS +  +  K ++    ++ +G +  G V S+K YGAF++  GG  GLLH+S++SH
Sbjct  546  VTKNQSLMDKTLEKVVSIVGREIEVGGIYKGVVTSIKEYGAFVEFNGGKQGLLHISELSH  605

Query  368  DRVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPG  243
            + VS I+ ++  G  L +M +  D   G + LS K     PG
Sbjct  606  EPVSKISDIVSIGQQLSLMCIGQD-VHGNIKLSLKAALRGPG  646


>gi|110741951|dbj|BAE98916.1|  hypothetical protein [Arabidopsis thaliana]
Length=631

 Score = 59.7 bits (143),  Expect = 1e-08
 Identities = 28/76 (36%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
 Frame = -3

Query  470  GSVALGNVQSLKPYGAFIDIGGI-NGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDR  294
            G+   G V++++P+GAF+D G   +GL+HVSQ+S + V D+++V+  G  +KV ++  D 
Sbjct  136  GATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVTIGQEVKVRLVEADI  195

Query  293  ERGRVSLSTKKLEPTP  246
            E  R+SL+ ++ +  P
Sbjct  196  ESKRISLTMRENDDPP  211


>gi|53794021|gb|AAU93601.1|  chloroplast polyprotein of elongation factor Ts precursor [Arabidopsis 
thaliana]
Length=710

 Score = 59.7 bits (143),  Expect = 1e-08
 Identities = 28/76 (36%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
 Frame = -3

Query  470  GSVALGNVQSLKPYGAFIDIGGI-NGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDR  294
            G+   G V++++P+GAF+D G   +GL+HVSQ+S + V D+++V+  G  +KV ++  D 
Sbjct  136  GATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVTIGQEVKVRLVEADI  195

Query  293  ERGRVSLSTKKLEPTP  246
            E  R+SL+ ++ +  P
Sbjct  196  ESKRISLTMRENDDPP  211


>gi|15982885|gb|AAL09789.1|  AT4g29060/F19B15_90 [Arabidopsis thaliana]
 gi|18377634|gb|AAL66967.1|  unknown protein [Arabidopsis thaliana]
 gi|20465639|gb|AAM20288.1|  unknown protein [Arabidopsis thaliana]
Length=455

 Score = 59.7 bits (143),  Expect = 1e-08
 Identities = 28/76 (36%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
 Frame = -3

Query  470  GSVALGNVQSLKPYGAFIDIGGI-NGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDR  294
            G+   G V++++P+GAF+D G   +GL+HVSQ+S + V D+++V+  G  +KV ++  D 
Sbjct  136  GATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVTIGQEVKVRLVEADI  195

Query  293  ERGRVSLSTKKLEPTP  246
            E  R+SL+ ++ +  P
Sbjct  196  ESKRISLTMRENDDPP  211


>gi|18417320|ref|NP_567820.1|  EMB2726; RNA binding / structural constituent of ribosome / translation 
elongation factor [Arabidopsis thaliana]
 gi|4972052|emb|CAB43920.1|  putative protein [Arabidopsis thaliana]
 gi|7269804|emb|CAB79664.1|  putative protein [Arabidopsis thaliana]
 gi|15983773|gb|AAL10483.1|  AT4g29060/F19B15_90 [Arabidopsis thaliana]
Length=953

 Score = 59.7 bits (143),  Expect = 1e-08
 Identities = 28/76 (36%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
 Frame = -3

Query  470  GSVALGNVQSLKPYGAFIDIGGI-NGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDR  294
            G+   G V++++P+GAF+D G   +GL+HVSQ+S + V D+++V+  G  +KV ++  D 
Sbjct  136  GATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVTIGQEVKVRLVEADI  195

Query  293  ERGRVSLSTKKLEPTP  246
            E  R+SL+ ++ +  P
Sbjct  196  ESKRISLTMRENDDPP  211


>gi|79325369|ref|NP_001031743.1|  EMB2726; RNA binding / structural constituent of ribosome / translation 
elongation factor [Arabidopsis thaliana]
Length=709

 Score = 59.7 bits (143),  Expect = 1e-08
 Identities = 28/76 (36%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
 Frame = -3

Query  470  GSVALGNVQSLKPYGAFIDIGGI-NGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDR  294
            G+   G V++++P+GAF+D G   +GL+HVSQ+S + V D+++V+  G  +KV ++  D 
Sbjct  136  GATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVTIGQEVKVRLVEADI  195

Query  293  ERGRVSLSTKKLEPTP  246
            E  R+SL+ ++ +  P
Sbjct  196  ESKRISLTMRENDDPP  211


>gi|115488938|ref|NP_001066956.1|  Os12g0541500 [Oryza sativa (japonica cultivar-group)]
 gi|77556660|gb|ABA99456.1|  Elongation factor TS family protein, expressed [Oryza sativa 
(japonica cultivar-group)]
 gi|113649463|dbj|BAF29975.1|  Os12g0541500 [Oryza sativa (japonica cultivar-group)]
Length=1123

 Score = 59.7 bits (143),  Expect = 1e-08
 Identities = 30/84 (35%), Positives = 52/84 (61%), Gaps = 5/84 (5%)
 Frame = -3

Query  470  GSVALGNVQSLKPYGAFIDIGGIN-GLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDR  294
            G+   G V+S+KP+G F+DIG    GL+H+S++S   V DI+++   G  + V ++  ++
Sbjct  143  GASFTGKVRSIKPFGVFVDIGAFTEGLVHISRVSDGFVKDISSLFTVGQEVSVRLVEANK  202

Query  293  ERGRVSLSTKKLEPTPGDMIRNPT  222
            E GR+SL+ +    T GD ++  T
Sbjct  203  ETGRISLTMR----TGGDYVKPKT  222


>gi|116056397|emb|CAL52686.1|  Predicted RNA-binding polyribonucleotide nucleotidyltransferase 
(ISS) [Ostreococcus tauri]
Length=345

 Score = 57.4 bits (137),  Expect = 5e-08
 Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 24/165 (14%)
 Frame = -3

Query  668  NKGGVV--ALVEGLRGFVPFSQI----------SSKPPAEELLDKEIPL-KFVEV---DE  537
            N+GGV+  A   G   F+P SQ+           S   A+E+   E  + K ++V   D 
Sbjct  83   NRGGVILRATPGGFTAFLPKSQMRSTRLRGGRGGSASEADEMKTLEGQIGKLIDVKLMDC  142

Query  536  EQSRLVLSNRKAMADSQAQ-LGIGSVALGNVQSLKPYGAFIDI-------GGINGLLHVS  381
              +R+V+S R  + +   + L  G V    V SL  +GAF+++        G+ GL+H+S
Sbjct  143  SGNRIVVSERALLQEGAVEKLPAGEVKEVVVTSLSDFGAFVEVCDGQGAASGLEGLVHIS  202

Query  380  QISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP  246
            +IS +R+S     ++ G    V +L  + E GR++ S K+ +  P
Sbjct  203  EISWNRISHPRDAVKVGQREFVKVLEVNGETGRINFSIKQTQADP  247


>gi|116059899|emb|CAL55958.1|  rRNA processing protein Rrp5 (ISS) [Ostreococcus tauri]
Length=1947

 Score = 56.2 bits (134),  Expect = 1e-07
 Identities = 39/146 (26%), Positives = 74/146 (50%), Gaps = 12/146 (8%)
 Frame = -3

Query  665   KGGVVALVEGLRGFVPFSQISSKPPAEELLD----KEIPLKFVEVDEEQSRLVLSNRKAM  498
             KG  VAL   +      S ++    A+ +      K +  + V  D  + R+ +S R+  
Sbjct  1340  KGCFVALSRSIDAMCKLSNLADDFIADPIASFPPGKLVQGRIVSADAAKGRVEISLRERE  1399

Query  497   ADSQAQ-----LGIGSVALGNVQSLKPYGAFIDIGG--INGLLHVSQISHDRVS-DIATV  342
               SQ       + +GSV +G V+ ++PYG FI + G  ++GL H+S  +  R++ D++  
Sbjct  1400  NSSQGNADVSGVDVGSVMMGTVRRVQPYGVFIGLDGTKLSGLCHISMFADARINDDLSLH  1459

Query  341   LQPGDTLKVMILSHDRERGRVSLSTK  264
             ++ G+ ++V +L  + E  ++SL  K
Sbjct  1460  VRQGERVRVKVLEINAETKKISLGCK  1485


 Score = 33.9 bits (76),  Expect = 0.58
 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
 Frame = -3

Query  485   AQLGIGSVALGNVQSLKPYGAFIDIG-GINGLLHVSQISHDRVSDIATVLQPGDTLKVMI  309
             A L  G    G V++    G F+ +   I+ +  +S ++ D ++D      PG  ++  I
Sbjct  1322  ANLVPGQRIKGYVKATTKKGCFVALSRSIDAMCKLSNLADDFIADPIASFPPGKLVQGRI  1381

Query  308   LSHDRERGRVSLSTKKLE  255
             +S D  +GRV +S ++ E
Sbjct  1382  VSADAAKGRVEISLRERE  1399


>gi|115471081|ref|NP_001059139.1|  Os07g0203300 [Oryza sativa (japonica cultivar-group)]
 gi|113610675|dbj|BAF21053.1|  Os07g0203300 [Oryza sativa (japonica cultivar-group)]
Length=689

 Score = 54.3 bits (129),  Expect = 4e-07
 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
 Frame = -3

Query  491  SQAQLGIGSVALGNVQSLKPYGAFIDIGG--INGLLHVSQISHDRVSDIATVLQPGDTLK  318
            S + L +G +  G V+ ++ +G F+ I G  +  L HVS++S + V DI +  + GD +K
Sbjct  230  SYSDLHVGDIIAGQVKRVESFGLFVTIQGSELVALCHVSELSDEPVLDIHSCHKAGDKVK  289

Query  317  VMILSHDRERGRVSLSTKK  261
              IL  D ER RVS+  KK
Sbjct  290  AKILKIDEERHRVSIGMKK  308


>gi|33235571|dbj|BAC79783.2|  putative pre-rRNA processing protein RRP5 [Oryza sativa (japonica 
cultivar-group)]
 gi|50508626|dbj|BAD31015.1|  putative pre-rRNA processing protein RRP5 [Oryza sativa (japonica 
cultivar-group)]
Length=1668

 Score = 54.3 bits (129),  Expect = 4e-07
 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
 Frame = -3

Query  491   SQAQLGIGSVALGNVQSLKPYGAFIDIGG--INGLLHVSQISHDRVSDIATVLQPGDTLK  318
             S + L +G +  G V+ ++ +G F+ I G  +  L HVS++S + V DI +  + GD +K
Sbjct  1209  SYSDLHVGDIIAGQVKRVESFGLFVTIQGSELVALCHVSELSDEPVLDIHSCHKAGDKVK  1268

Query  317   VMILSHDRERGRVSLSTKK  261
               IL  D ER RVS+  KK
Sbjct  1269  AKILKIDEERHRVSIGMKK  1287


>gi|53794019|gb|AAU93600.1|  chloroplast polyprotein of elongation factor Ts precursor [Chlamydomonas 
reinhardtii]
Length=603

 Score = 53.5 bits (127),  Expect = 7e-07
 Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
 Frame = -3

Query  470  GSVALGNVQSLKPYGAFIDIGG-INGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDR  294
            GS   G V +++ +GAF++ G   NGL+H+S+++     +   V+QPG  + V +LS D 
Sbjct  64   GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDA  123

Query  293  ERGRVSLSTKKLEPTPG------DMIRNPTLVFEKAEEMAQTFRQRIAQAEAMARADMLR  132
            E+ RVSL  K             D+I  P      A +  +     +   +   RAD+  
Sbjct  124  EKKRVSLELKSAVAAEASAEESDDIITEPDREGADATDDDEDVEVELEDGQVEVRADLPG  183

Query  131  FQ  126
            F+
Sbjct  184  FE  185


>gi|53794015|gb|AAU93598.1|  chloroplast polyprotein of elongation factor Ts precursor [Chlamydomonas 
reinhardtii]
Length=1013

 Score = 53.5 bits (127),  Expect = 7e-07
 Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
 Frame = -3

Query  470  GSVALGNVQSLKPYGAFIDIGG-INGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDR  294
            GS   G V +++ +GAF++ G   NGL+H+S+++     +   V+QPG  + V +LS D 
Sbjct  64   GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDA  123

Query  293  ERGRVSLSTKKLEPTPG------DMIRNPTLVFEKAEEMAQTFRQRIAQAEAMARADMLR  132
            E+ RVSL  K             D+I  P      A +  +     +   +   RAD+  
Sbjct  124  EKKRVSLELKSAVAAEASAEESDDIITEPDREGADATDDDEDVEVELEDGQVEVRADLPG  183

Query  131  FQ  126
            F+
Sbjct  184  FE  185


>gi|53794017|gb|AAU93599.1|  plastid-specific ribosomal protein-7 precursor [Chlamydomonas 
reinhardtii]
Length=560

 Score = 53.5 bits (127),  Expect = 7e-07
 Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
 Frame = -3

Query  470  GSVALGNVQSLKPYGAFIDIGG-INGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDR  294
            GS   G V +++ +GAF++ G   NGL+H+S+++     +   V+QPG  + V +LS D 
Sbjct  64   GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDA  123

Query  293  ERGRVSLSTKKLEPTPG------DMIRNPTLVFEKAEEMAQTFRQRIAQAEAMARADMLR  132
            E+ RVSL  K             D+I  P      A +  +     +   +   RAD+  
Sbjct  124  EKKRVSLELKSAVAAEASAEESDDIITEPDREGADATDDDEDVEVELEDGQVEVRADLPG  183

Query  131  FQ  126
            F+
Sbjct  184  FE  185


>gi|116061714|emb|CAL52432.1|  Exosomal 3'-5' exoribonuclease complex, subunit Rrp41 and related 
exoribonucleases (ISS) [Ostreococcus tauri]
Length=620

 Score = 53.1 bits (126),  Expect = 9e-07
 Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 10/121 (8%)
 Frame = -3

Query  578  LDKEIPLKFVEVDEEQSRLVLSNRKAMADS---------QAQLGIGSVALGNVQSLKPYG  426
            L+K+   K   ++++    +    KA  D+          + + +G   +  V+ + P+G
Sbjct  480  LEKDTGSKVAVLNDDGDLAIFGPNKASYDAALAHIESMKNSIIEVGKTYVTTVKDVMPFG  539

Query  425  A-FIDIGGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPT  249
            A  I   G +GLLHVS+I+H+R  ++A V   GD ++V  ++ +   G++  S K L   
Sbjct  540  AVLITSNGDDGLLHVSEIAHERTENVADVFSVGDVVEVKCVAREGPSGKIKWSRKALLSL  599

Query  248  P  246
            P
Sbjct  600  P  600


>gi|116056981|emb|CAL51408.1|  Predicted RNA-binding polyribonucleotide nucleotidyltransferase 
(ISS) [Ostreococcus tauri]
Length=294

 Score = 49.3 bits (116),  Expect = 1e-05
 Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 11/117 (9%)
 Frame = -3

Query  599  KPPAEELLDKEIPLKFVEVDEEQSRLVLSNRKAMADSQAQ----LGIGSVALGNVQSLKP  432
            KP +EE       L  ++ ++E   L     K   D++ Q    L  G    G V+S++P
Sbjct  141  KPKSEE------ELAAIKSEQEAKFLARQEYKKQQDAKVQAVKGLKKGEKVEGEVKSIQP  194

Query  431  YGAFIDIG-GINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSLSTK  264
            +GAF+++  G  GLLHV+++S D    +   ++ GD + V I+  +  + ++S+  K
Sbjct  195  FGAFVEVAEGCEGLLHVTELSDDFNVKVEDFVKVGDKVTVTIVGIEGAKVKLSMKEK  251


 Score = 42.4 bits (98),  Expect = 0.002
 Identities = 23/84 (27%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
 Frame = -3

Query  509  RKAMADSQAQLGIGSVALGNVQSLKPYGAFIDIGG-INGLLHVSQISHDRVSDIATVLQP  333
            RK +    + + +G+   G V+ ++ YG F+D G   +GL+H+S++    V  +A V+  
Sbjct  60   RKNVTVEDSAVVVGAEFSGKVKRIQDYGCFVDFGAKQDGLVHISELKDGFVESVAEVVSQ  119

Query  332  GDTLKVMILSHDRERGRVSLSTKK  261
               ++V +   + + G++SL+ KK
Sbjct  120  DQDVQVWV--KEIKDGKISLTMKK  141


>gi|21537411|gb|AAM61752.1|  putative eukaryotic translation initiation factor 2 alpha subunit, 
eIF2 [Arabidopsis thaliana]
Length=344

 Score = 48.9 bits (115),  Expect = 2e-05
 Identities = 34/152 (22%), Positives = 68/152 (44%), Gaps = 9/152 (5%)
 Frame = -3

Query  464  VALGNVQSLKPYGAFIDIGGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERG  285
            + + N+  +  Y + ++   I G++  S++S  R+  ++++++ G    VM+L  D+E+G
Sbjct  26   IQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKG  85

Query  284  RVSLSTKKLE----PTPGDMIRNPTLVFEKAEEMAQTFRQRIAQAEAMARADMLR-----  132
             + LS +K+      T  +      LV      +A+T    +          + R     
Sbjct  86   YIDLSKRKVSEEDIQTCEERYNKSKLVHSIMRHVAETLSIDLEDLYVNIGWPLYRRHGHA  145

Query  131  FQPESGLTLSSDGILGPLTSDLPAEGLDLSDV  36
            F+    L    D +LGPLT ++   G D  +V
Sbjct  146  FEAFKILVTDPDSVLGPLTREIKEVGPDGQEV  177


>gi|18405334|ref|NP_565927.1|  RNA binding [Arabidopsis thaliana]
 gi|19347786|gb|AAL86344.1|  putative eukaryotic translation initiation factor 2 alpha subunit 
eIF2 [Arabidopsis thaliana]
 gi|20198018|gb|AAD25664.2|  putative eukaryotic translation initiation factor 2 alpha subunit, 
eIF2 [Arabidopsis thaliana]
 gi|21436249|gb|AAM51263.1|  putative eukaryotic translation initiation factor 2 alpha subunit 
eIF2 [Arabidopsis thaliana]
Length=344

 Score = 47.8 bits (112),  Expect = 4e-05
 Identities = 33/152 (21%), Positives = 68/152 (44%), Gaps = 9/152 (5%)
 Frame = -3

Query  464  VALGNVQSLKPYGAFIDIGGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERG  285
            + + N+  +  Y + ++   I G++  S++S  R+  ++++++ G    VM+L  D+E+G
Sbjct  26   IQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKG  85

Query  284  RVSLSTKKLE----PTPGDMIRNPTLVFEKAEEMAQTFRQRIAQAEAMARADMLR-----  132
             + LS +++      T  +      LV      +A+T    +          + R     
Sbjct  86   YIDLSKRRVSEEDIQTCEERYNKSKLVHSIMRHVAETLSIDLEDLYVNIGWPLYRRHGHA  145

Query  131  FQPESGLTLSSDGILGPLTSDLPAEGLDLSDV  36
            F+    L    D +LGPLT ++   G D  +V
Sbjct  146  FEAFKILVTDPDSVLGPLTREIKEVGPDGQEV  177


>gi|42571149|ref|NP_973648.1|  RNA binding [Arabidopsis thaliana]
 gi|79324819|ref|NP_001031518.1|  RNA binding [Arabidopsis thaliana]
Length=241

 Score = 47.8 bits (112),  Expect = 4e-05
 Identities = 33/152 (21%), Positives = 68/152 (44%), Gaps = 9/152 (5%)
 Frame = -3

Query  464  VALGNVQSLKPYGAFIDIGGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERG  285
            + + N+  +  Y + ++   I G++  S++S  R+  ++++++ G    VM+L  D+E+G
Sbjct  26   IQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKG  85

Query  284  RVSLSTKKLE----PTPGDMIRNPTLVFEKAEEMAQTFRQRIAQAEAMARADMLR-----  132
             + LS +++      T  +      LV      +A+T    +          + R     
Sbjct  86   YIDLSKRRVSEEDIQTCEERYNKSKLVHSIMRHVAETLSIDLEDLYVNIGWPLYRRHGHA  145

Query  131  FQPESGLTLSSDGILGPLTSDLPAEGLDLSDV  36
            F+    L    D +LGPLT ++   G D  +V
Sbjct  146  FEAFKILVTDPDSVLGPLTREIKEVGPDGQEV  177


>gi|4588003|gb|AAD25944.1|AF085279_17  hypothetical EIF-2-Alpha [Arabidopsis thaliana]
Length=370

 Score = 47.8 bits (112),  Expect = 4e-05
 Identities = 33/152 (21%), Positives = 68/152 (44%), Gaps = 9/152 (5%)
 Frame = -3

Query  464  VALGNVQSLKPYGAFIDIGGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERG  285
            + + N+  +  Y + ++   I G++  S++S  R+  ++++++ G    VM+L  D+E+G
Sbjct  26   IQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKG  85

Query  284  RVSLSTKKLE----PTPGDMIRNPTLVFEKAEEMAQTFRQRIAQAEAMARADMLR-----  132
             + LS +++      T  +      LV      +A+T    +          + R     
Sbjct  86   YIDLSKRRVSEEDIQTCEERYNKSKLVHSIMRHVAETLSIDLEDLYVNIGWPLYRRHGHA  145

Query  131  FQPESGLTLSSDGILGPLTSDLPAEGLDLSDV  36
            F+    L    D +LGPLT ++   G D  +V
Sbjct  146  FEAFKILVTDPDSVLGPLTREIKEVGPDGQEV  177


>gi|13549160|gb|AAK29673.1|AF353096_1  protein synthesis initiation factor eIF2 alpha [Arabidopsis thaliana]
Length=343

 Score = 44.3 bits (103),  Expect = 4e-04
 Identities = 19/69 (27%), Positives = 41/69 (59%), Gaps = 0/69 (0%)
 Frame = -3

Query  464  VALGNVQSLKPYGAFIDIGGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERG  285
            + +  +  +  Y + ++   I G++  S++S  R+  I+++++ G T  VM+L  DRERG
Sbjct  26   IQVKTIADMGAYVSLLEYNNIEGMILFSELSRRRIGSISSLIKVGRTEPVMVLRVDRERG  85

Query  284  RVSLSTKKL  258
             + LS +++
Sbjct  86   YIDLSKRRV  94


>gi|15239135|ref|NP_196166.1|  EIF2 ALPHA; RNA binding [Arabidopsis thaliana]
 gi|11762124|gb|AAG40340.1|AF324988_1  AT5g05470 [Arabidopsis thaliana]
 gi|10178124|dbj|BAB11536.1|  eukaryotic translation initiation factor 2 alpha subunit-like 
protein [Arabidopsis thaliana]
 gi|26450113|dbj|BAC42176.1|  putative eukaryotic translation initiation factor 2 alpha subunit 
[Arabidopsis thaliana]
 gi|90093274|gb|ABD85150.1|  At5g05470 [Arabidopsis thaliana]
Length=344

 Score = 43.9 bits (102),  Expect = 6e-04
 Identities = 19/69 (27%), Positives = 41/69 (59%), Gaps = 0/69 (0%)
 Frame = -3

Query  464  VALGNVQSLKPYGAFIDIGGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERG  285
            + +  +  +  Y + ++   I G++  S++S  R+  I+++++ G T  VM+L  DRERG
Sbjct  26   IQVKTIADMGAYVSLLEYNNIEGMILFSELSRRRIRSISSLIKVGRTEPVMVLRVDRERG  85

Query  284  RVSLSTKKL  258
             + LS +++
Sbjct  86   YIDLSKRRV  94


>gi|6006870|gb|AAF00646.1|AC009540_23  putative polynucleotide phosphorylase [Arabidopsis thaliana]
 gi|6091752|gb|AAF03462.1|AC009327_1  putative polynucleotide phosphorylase [Arabidopsis thaliana]
Length=948

 Score = 42.4 bits (98),  Expect = 0.002
 Identities = 22/67 (32%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
 Frame = -3

Query  449  VQSLKPYGAFIDIG-GINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSL  273
            ++S+ PYGAF++I  G  GL H+S++S + ++      + GD + V ++  + E+G++ L
Sbjct  796  IKSMAPYGAFVEIAPGREGLCHISELSAEWLAKPEDAYKVGDRIDVKLIEVN-EKGQLRL  854

Query  272  STKKLEP  252
            S + L P
Sbjct  855  SVRALLP  861


>gi|30678905|ref|NP_187021.2|  3'-5'-exoribonuclease/ RNA binding / nucleic acid binding [Arabidopsis 
thaliana]
 gi|25991185|gb|AAN76771.1|AF450480_1  polynucleotide phosphorylase [Arabidopsis thaliana]
Length=922

 Score = 42.4 bits (98),  Expect = 0.002
 Identities = 22/67 (32%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
 Frame = -3

Query  449  VQSLKPYGAFIDIG-GINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSL  273
            ++S+ PYGAF++I  G  GL H+S++S + ++      + GD + V ++  + E+G++ L
Sbjct  770  IKSMAPYGAFVEIAPGREGLCHISELSAEWLAKPEDAYKVGDRIDVKLIEVN-EKGQLRL  828

Query  272  STKKLEP  252
            S + L P
Sbjct  829  SVRALLP  835


>gi|95932676|gb|ABF57675.1|  chloroplast polyribonucleotide phosphorylase [Chlamydomonas reinhardtii]
Length=854

 Score = 42.0 bits (97),  Expect = 0.002
 Identities = 22/66 (33%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
 Frame = -3

Query  449  VQSLKPYGAFIDI-GGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSL  273
            V  L  +G F+++  G  GL+HVS++     +D+A V++ GD + VM++    + G++SL
Sbjct  738  VAGLAAFGCFVELCPGRQGLVHVSELDDPAPTDVAAVVKVGDLMDVMVMG-VADGGKLSL  796

Query  272  STKKLE  255
            S K ++
Sbjct  797  SRKAVQ  802


>gi|7413616|emb|CAB85703.1|  putative polynucleotide phosphorylase [Arabidopsis thaliana]
Length=922

 Score = 41.6 bits (96),  Expect = 0.003
 Identities = 22/67 (32%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
 Frame = -3

Query  449  VQSLKPYGAFIDIG-GINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSL  273
            ++S+ PYGAF++I  G  GL H+S++S + ++      + GD + V ++  + E G++ L
Sbjct  770  IKSMAPYGAFVEIAPGREGLCHISELSAEWLAKPEDAYKVGDRIDVKLIEVN-EEGQLRL  828

Query  272  STKKLEP  252
            S + L P
Sbjct  829  SVRALLP  835


>gi|115470767|ref|NP_001058982.1|  Os07g0168000 [Oryza sativa (japonica cultivar-group)]
 gi|50509724|dbj|BAD31776.1|  putative polynucleotide phosphorylase [Oryza sativa (japonica 
cultivar-group)]
 gi|113610518|dbj|BAF20896.1|  Os07g0168000 [Oryza sativa (japonica cultivar-group)]
Length=902

 Score = 41.2 bits (95),  Expect = 0.004
 Identities = 20/67 (29%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
 Frame = -3

Query  449  VQSLKPYGAFIDIG-GINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSL  273
            ++++ PYGAF++I  G  GL H+S++S   ++      + GD + V ++  + ++G++ L
Sbjct  771  IKTIAPYGAFVEIAPGREGLCHISELSSSWLAKAEDAFKVGDRIDVKLIEIN-DKGQLRL  829

Query  272  STKKLEP  252
            S++ L P
Sbjct  830  SSRALLP  836


>gi|92894842|gb|ABE92409.1|  Nucleic acid-binding, OB-fold [Medicago truncatula]
Length=164

 Score = 40.0 bits (92),  Expect = 0.008
 Identities = 21/67 (31%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
 Frame = -3

Query  449  VQSLKPYGAFIDIG-GINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSL  273
            ++S+ PYGAF++I  G  GL H+S++S   ++      + GD + V ++  + ++G++ L
Sbjct  6    IKSIVPYGAFVEIAPGREGLCHISELSSAWLAKAEDAFKVGDRIDVKLIEIN-DKGQLRL  64

Query  272  STKKLEP  252
            S + L P
Sbjct  65   SHRALLP  71
Distribution of 68 Blast Hits on the Query Sequence
