Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168939168-15873-4979140582.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig229 Length=441
Related Structures Score E Sequences producing significant alignments: (Bits) Value gi|56122682|gb|AAV74404.1| chloroplast oxygen-evolving enhanc... 211 1e-54 gi|8131595|dbj|BAA96362.1| oxygen evolving enhancer protein 3 [B 188 7e-48 gi|15234637|ref|NP_192427.1| calcium ion binding [Arabidopsis... 185 5e-47 gi|62898519|dbj|BAD97359.1| PsbQ [Nicotiana tabacum] 185 6e-47 gi|15233587|ref|NP_193860.1| calcium ion binding [Arabidopsis... 184 1e-46 gi|58700507|gb|AAW80966.1| chloroplast oxygen-evolving protei... 183 2e-46 gi|58700509|gb|AAW80967.1| chloroplast oxygen-evolving protei... 183 2e-46 gi|11134057|sp|Q41048|PSBQ1_MAIZE Oxygen-evolving enhancer pr... 182 4e-46 gi|79325205|ref|NP_001031687.1| calcium ion binding [Arabidopsis 179 3e-45 gi|31096349|gb|AAP43511.1| oxygen-evolving enhancer protein 3 pr 178 6e-45 gi|11134066|sp|Q41806|PSBQ2_MAIZE Oxygen-evolving enhancer pr... 178 7e-45 gi|51457944|gb|AAU03361.1| photosystem II oxygen-evolving com... 176 3e-44 gi|131397|sp|P12301|PSBQ_SPIOL Oxygen-evolving enhancer prote... 174 1e-43 gi|4583542|emb|CAB40384.1| 16 kDa polypeptide of oxygen-evolv... 172 4e-43 gi|115472625|ref|NP_001059911.1| Os07g0544800 [Oryza sativa (... 169 3e-42 gi|34393258|dbj|BAC83128.1| putative Oxygen-evolving enhancer... 169 3e-42 gi|11133850|sp|O22591|PSBQ_ONOVI Oxygen-evolving enhancer pro... 163 2e-40 gi|34810268|pdb|1NZE|A Chain A, Crystal Structure Of Psbq Pol... 151 7e-37 gi|42565457|gb|AAS20996.1| oxygen-evolving enhancer protein 3 [H 137 1e-32 gi|32400800|gb|AAP80632.1|AF475110_1 oxygen-evolving complex pre 107 2e-23 gi|111162641|gb|ABH07507.1| chloroplast oxygen-evolving protein 66.6 3e-11 gi|21537394|gb|AAM61735.1| unknown [Arabidopsis thaliana] 61.2 1e-09 gi|18395819|ref|NP_566137.1| calcium ion binding [Arabidopsis... 60.1 3e-09 gi|32489844|emb|CAE05708.1| OSJNBb0065J09.4 [Oryza sativa (ja... 57.0 3e-08 gi|56744293|gb|AAW28572.1| Putative oxygen evolving enhancer ... 53.9 2e-07 gi|53749458|gb|AAU90312.1| Putative oxygen evolving enhancer ... 52.4 6e-07 gi|110739140|dbj|BAF01486.1| hypothetical protein [Arabidopsis t 50.8 2e-06 gi|18394073|ref|NP_563937.1| calcium ion binding [Arabidopsis... 50.8 2e-06 gi|11134063|sp|Q41643|PSBQ_VOLCA Oxygen-evolving enhancer pro... 50.1 3e-06 gi|74272689|gb|ABA01140.1| chloroplast oxygen-evolving protein 3 49.3 5e-06 gi|131395|sp|P12852|PSBQ_CHLRE Oxygen-evolving enhancer prote... 49.3 5e-06 gi|115459486|ref|NP_001053343.1| Os04g0523000 [Oryza sativa (... 47.8 2e-05 gi|42571459|ref|NP_973820.1| calcium ion binding [Arabidopsis th 47.4 2e-05 gi|115470199|ref|NP_001058698.1| Os07g0105600 [Oryza sativa (... 45.1 1e-04 gi|115446893|ref|NP_001047226.1| Os02g0578400 [Oryza sativa (... 44.3 2e-04 gi|116055497|emb|CAL58165.1| unnamed protein product [Ostreococc 35.8 0.060 gi|8708896|gb|AAC17970.2| soluble starch synthase [Chlamydomonas 30.4 2.5 gi|29165435|gb|AAO65321.1| MADS affecting flowering 5 variant II 29.6 4.3 gi|115439971|ref|NP_001044265.1| Os01g0752400 [Oryza sativa (... 29.3 5.6 gi|57899162|dbj|BAD87105.1| Prkcsh-prov protein-like [Oryza s... 29.3 5.6 gi|115449223|ref|NP_001048391.1| Os02g0796700 [Oryza sativa (... 28.9 7.3 gi|47497032|dbj|BAD19085.1| protein kinase-like [Oryza sativa (j 28.9 7.3 gi|52076198|dbj|BAD44852.1| unknown protein [Oryza sativa (ja... 28.5 9.6
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 311 Number of extensions: 5 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 441 Length of database: 101054579 Length adjustment: 102 Effective length of query: 339 Effective length of database: 72152981 Effective search space: 3246884145 Effective search space used: 3246884145 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 62 (28.5 bits)