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BLASTX 2.2.15 [Oct-15-2006] 
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman 
(1997), "Gapped BLAST and PSI-BLAST: a new generation of 
protein database search programs", Nucleic Acids Res. 25:3389-3402.

RID: 1168939289-24177-171509307105.BLASTQ1


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
           4,458,890 sequences; 1,532,996,420 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs
Taxonomy reports

Query=  Contig234
Length=478

Distribution of 5 Blast Hits on the Query Sequence


                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|7378643|emb|CAB83319.1|  putative protein [Arabidopsis thalian   138    1e-32
gi|18414270|ref|NP_568123.1|  nucleobase:cation symporter [Ara...   138    1e-32 UniGene infoGene info
gi|115477827|ref|NP_001062509.1|  Os08g0560600 [Oryza sativa (...   128    1e-29 Gene info
gi|77555146|gb|ABA97942.1|  retrotransposon protein, putative,...  30.0    4.0  
gi|22091481|emb|CAC81072.1|  MADS box transcription factor [Daucu  29.3    6.8
Alignments

>gi|7378643|emb|CAB83319.1|  putative protein [Arabidopsis thaliana]
Length=482

 Score =  138 bits (347),  Expect = 1e-32
 Identities = 66/92 (71%), Positives = 74/92 (80%), Gaps = 0/92 (0%)
 Frame = -3

Query  455  LYRILSKNGCAPEWVELNKEIRNKVSEWRVALKKAWESKCNGDHNKWVECSEPLKMQLCD  276
            LYRIL+KNG APEWVELNKEIRNK  EWRV+LKKAW  K   D + W E S+ LK +L  
Sbjct  391  LYRILNKNGFAPEWVELNKEIRNKAKEWRVSLKKAWTMKLEEDQSGWEERSDLLKNELKQ  450

Query  275  INDKVFRYNLIVPFGRQMFGLKWEKEVARLEE  180
            IN+ VFRYNLIVPFGRQMFGLKWEKE+ RL+E
Sbjct  451  INNMVFRYNLIVPFGRQMFGLKWEKEIDRLKE  482


>gi|18414270|ref|NP_568123.1| UniGene infoGene info nucleobase:cation symporter [Arabidopsis thaliana]
 gi|14326525|gb|AAK60307.1|AF385716_1 UniGene infoGene info AT5g03560/F12E4 [Arabidopsis thaliana]
 gi|19548041|gb|AAL87384.1| UniGene infoGene info AT5g03560/F12E4 [Arabidopsis thaliana]
Length=241

 Score =  138 bits (347),  Expect = 1e-32
 Identities = 66/92 (71%), Positives = 74/92 (80%), Gaps = 0/92 (0%)
 Frame = -3

Query  455  LYRILSKNGCAPEWVELNKEIRNKVSEWRVALKKAWESKCNGDHNKWVECSEPLKMQLCD  276
            LYRIL+KNG APEWVELNKEIRNK  EWRV+LKKAW  K   D + W E S+ LK +L  
Sbjct  150  LYRILNKNGFAPEWVELNKEIRNKAKEWRVSLKKAWTMKLEEDQSGWEERSDLLKNELKQ  209

Query  275  INDKVFRYNLIVPFGRQMFGLKWEKEVARLEE  180
            IN+ VFRYNLIVPFGRQMFGLKWEKE+ RL+E
Sbjct  210  INNMVFRYNLIVPFGRQMFGLKWEKEIDRLKE  241


>gi|115477827|ref|NP_001062509.1| Gene info Os08g0560600 [Oryza sativa (japonica cultivar-group)]
 gi|45736118|dbj|BAD13149.1| Gene info unknown protein [Oryza sativa (japonica cultivar-group)]
 gi|45736164|dbj|BAD13210.1| Gene info unknown protein [Oryza sativa (japonica cultivar-group)]
 gi|113624478|dbj|BAF24423.1| Gene info Os08g0560600 [Oryza sativa (japonica cultivar-group)]
Length=216

 Score =  128 bits (321),  Expect = 1e-29
 Identities = 57/92 (61%), Positives = 72/92 (78%), Gaps = 0/92 (0%)
 Frame = -3

Query  455  LYRILSKNGCAPEWVELNKEIRNKVSEWRVALKKAWESKCNGDHNKWVECSEPLKMQLCD  276
            LYRILS+NGCAPEWVELNKEIR  ++ WR AL+KAW ++   D + W +    L+ Q+  
Sbjct  125  LYRILSRNGCAPEWVELNKEIRGMIARWRSALRKAWANRSEDDRSTWHDDHRLLQEQIRQ  184

Query  275  INDKVFRYNLIVPFGRQMFGLKWEKEVARLEE  180
            INDKVFRYNLIVPFGRQMFGL W+KE+ +L++
Sbjct  185  INDKVFRYNLIVPFGRQMFGLNWDKELDKLKQ  216


>gi|77555146|gb|ABA97942.1|  retrotransposon protein, putative, LINE subclass [Oryza sativa 
(japonica cultivar-group)]
Length=985

 Score = 30.0 bits (66),  Expect = 4.0
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = -3

Query  374  WRVALKKAWESKCNGDHNKWVECSEPLKMQLCDINDKVFRYNLIV-PFGRQMF  219
            W VAL + W + C   H      S P    LCD +D+   + L+  P  RQ++
Sbjct  832  WLVALNRCWTADCLRSHG----LSHPACCVLCDQSDETIDHLLVACPESRQLW  880


>gi|22091481|emb|CAC81072.1|  MADS box transcription factor [Daucus carota subsp. sativus]
Length=246

 Score = 29.3 bits (64),  Expect = 6.8
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 0/26 (0%)
 Frame = -3

Query  419  EWVELNKEIRNKVSEWRVALKKAWES  342
            E VE+NK +RNK+ E  V ++  WE+
Sbjct  159  ELVEINKALRNKLEENDVRIQSQWEA  184







  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 321
Number of extensions: 1
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 478
Length of database: 101054579
Length adjustment: 104
Effective length of query: 374
Effective length of database: 71586283
Effective search space: 3937245565
Effective search space used: 3937245565
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 63 (28.9 bits)