RID=1168939374-30278-173923972468.BLASTQ4, Contig238

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168939374-30278-173923972468.BLASTQ4 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig238
Length=362

Distribution of 14 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|21537121|gb|AAM61462.1|  photosystem II [Arabidopsis thaliana]  72.4    4e-13 
gi|18403499|ref|NP_564589.1|  unknown protein [Arabidopsis tha...  71.6    8e-13 
gi|400198|sp|P31336|PST2_GOSHI  Photosystem II 5 kDa protein, ...  66.2    3e-11
gi|18402859|ref|NP_566674.1|  unknown protein [Arabidopsis tha...  65.1    7e-11 
gi|90186625|gb|ABD91572.1|  unknown [Brassica rapa]                62.4    5e-10
gi|1465366|emb|CAA66701.1|  photosystem II [Arabidopsis thaliana]  60.1    2e-09 
gi|2129671|pir||S71280  photosystem II protein psbT - Arabidopsis  57.0    2e-08
gi|115446925|ref|NP_001047242.1|  Os02g0581100 [Oryza sativa (...  56.2    3e-08 
gi|81475|pir||S03277  photosystem II 5K protein - spinach (fragme  50.8    1e-06
gi|50251714|dbj|BAD27635.1|  unknown protein [Oryza sativa (japon  48.1    9e-06
gi|62320142|dbj|BAD94339.1|  hypothetical protein [Arabidopsis th  41.2    0.001 
gi|52076786|dbj|BAD45730.1|  hypothetical protein [Oryza sativ...  29.3    4.4  
gi|79577677|ref|NP_680175.2|  unknown protein [Arabidopsis tha...  28.1    9.7   
gi|15225876|ref|NP_180308.1|  rhodopsin-like receptor/ structu...  28.1    9.7

Alignments

 

>gi|21537121|gb|AAM61462.1|  photosystem II [Arabidopsis thaliana]
Length=106

 Score = 72.4 bits (176),  Expect = 4e-13
 Identities = 44/83 (53%), Positives = 57/83 (68%), Gaps = 0/83 (0%)
 Frame = -1

Query  362  STTARRGVIVakaseaaegekgsrELKQGSNNRRRELVFaaaaaaACSIANVAMGAEDPK  183
            S+ +RR + V KAS +        + ++ S   RR+LVF AAAAA CS+A VAM  ++PK
Sbjct  22   SSNSRRSLTVVKASGSENTTSLENKEQEQSMKMRRDLVFTAAAAAVCSLAKVAMADDEPK  81

Query  182  AGTPEAKKKYAPICVTMPTARVC  114
             GT  AKKKYAP+CVTMPTAR+C
Sbjct  82   RGTEAAKKKYAPVCVTMPTARIC  104


>gi|18403499|ref|NP_564589.1|  unknown protein [Arabidopsis thaliana]
 gi|4836947|gb|AAD30649.1|AC006085_22  Putative photosystem II 5 KD protein [Arabidopsis thaliana]
 gi|12325362|gb|AAG52621.1|AC024261_8  unknown protein; 88255-88575 [Arabidopsis thaliana]
 gi|14326535|gb|AAK60312.1|AF385721_1  At1g51400/F5D21_10 [Arabidopsis thaliana]
 gi|15215584|gb|AAK91337.1|  At1g51400/F5D21_10 [Arabidopsis thaliana]
 gi|22137316|gb|AAM91503.1|  At1g51400/F5D21_10 [Arabidopsis thaliana]
Length=106

 Score = 71.6 bits (174),  Expect = 8e-13
 Identities = 43/83 (51%), Positives = 57/83 (68%), Gaps = 0/83 (0%)
 Frame = -1

Query  362  STTARRGVIVakaseaaegekgsrELKQGSNNRRRELVFaaaaaaACSIANVAMGAEDPK  183
            S+ +RR + V KAS +        + ++ S   RR+LVF AAAAA CS+A VAM  ++PK
Sbjct  22   SSNSRRSLTVVKASGSENTTSLENKKQEQSMKMRRDLVFTAAAAAVCSLAKVAMADDEPK  81

Query  182  AGTPEAKKKYAPICVTMPTARVC  114
             GT  AKKKYAP+CVTMPTA++C
Sbjct  82   RGTEAAKKKYAPVCVTMPTAKIC  104


>gi|400198|sp|P31336|PST2_GOSHI  Photosystem II 5 kDa protein, chloroplast precursor (PSII-T) 
(Light-regulated unknown 11 kDa protein)
 gi|18512|emb|CAA38027.1|  hypothetical protein [Gossypium hirsutum]
Length=105

 Score = 66.2 bits (160),  Expect = 3e-11
 Identities = 38/59 (64%), Positives = 45/59 (76%), Gaps = 2/59 (3%)
 Frame = -1

Query  290  ELKQGSNNRRRELVFaaaaaaACSIANVAMGAEDPKAGTPEAKKKYAPICVTMPTARVC  114
            E K   NN RRE++FAAAAAA CS+A VA    +PK G+ EAKK YAP+CVTMPTAR+C
Sbjct  47   ERKTEGNNGRREMMFAAAAAAICSVAGVATA--EPKRGSAEAKKAYAPVCVTMPTARIC  103


>gi|18402859|ref|NP_566674.1|  unknown protein [Arabidopsis thaliana]
 gi|21542450|sp|Q39195|PST2_ARATH  Photosystem II 5 kDa protein, chloroplast precursor (PSII-T) 
(Nuclear encoded psbT) (PsbTn)
 gi|11692868|gb|AAG40037.1|AF324686_1  MSA6. [Arabidopsis thaliana]
 gi|11908024|gb|AAG41441.1|AF326859_1  unknown protein [Arabidopsis thaliana]
 gi|12642844|gb|AAK00364.1|AF339682_1  unknown protein [Arabidopsis thaliana]
 gi|11994265|dbj|BAB01448.1|  photosystem II 5 kD protein precursor [Arabidopsis thaliana]
 gi|17065058|gb|AAL32683.1|  photosystem II 5 kD protein precursor [Arabidopsis thaliana]
 gi|20260032|gb|AAM13363.1|  photosystem II 5 kD protein precursor [Arabidopsis thaliana]
 gi|21593345|gb|AAM65294.1|  photosystem II [Arabidopsis thaliana]
Length=103

 Score = 65.1 bits (157),  Expect = 7e-11
 Identities = 36/58 (62%), Positives = 44/58 (75%), Gaps = 1/58 (1%)
 Frame = -1

Query  284  KQGSNNRRRELVFaaaaaaACSIANVAMGAED-PKAGTPEAKKKYAPICVTMPTARVC  114
            +Q S   RR+L+F AAAAA CS+A VAM  E+ PK GT  AKKKYA +CVTMPTA++C
Sbjct  44   EQSSTTMRRDLMFTAAAAAVCSLAKVAMAEEEEPKRGTEAAKKKYAQVCVTMPTAKIC  101


>gi|90186625|gb|ABD91572.1|  unknown [Brassica rapa]
Length=106

 Score = 62.4 bits (150),  Expect = 5e-10
 Identities = 34/58 (58%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
 Frame = -1

Query  284  KQGSNNRRRELVFaaaaaaACSIANVAMG-AEDPKAGTPEAKKKYAPICVTMPTARVC  114
            +Q S   RR+L+F AAAAA C++A  AM   E+PK GT  AKKKYA +CVTMPTA++C
Sbjct  47   EQSSTTMRRDLMFTAAAAAVCALAKAAMADEEEPKRGTEAAKKKYAQVCVTMPTAKIC  104


>gi|1465366|emb|CAA66701.1|  photosystem II [Arabidopsis thaliana]
Length=103

 Score = 60.1 bits (144),  Expect = 2e-09
 Identities = 34/58 (58%), Positives = 42/58 (72%), Gaps = 1/58 (1%)
 Frame = -1

Query  284  KQGSNNRRRELVFaaaaaaACSIANVAMGAED-PKAGTPEAKKKYAPICVTMPTARVC  114
            +Q S   RR+L+F AAAAA CS+A VAM  E+ PK GT   KKKYA +CVTM TA++C
Sbjct  44   EQSSTTMRRDLMFTAAAAAVCSLAKVAMAEEEEPKRGTEAGKKKYAQVCVTMRTAKIC  101


>gi|2129671|pir||S71280  photosystem II protein psbT - Arabidopsis thaliana
Length=102

 Score = 57.0 bits (136),  Expect = 2e-08
 Identities = 32/54 (59%), Positives = 41/54 (75%), Gaps = 1/54 (1%)
 Frame = -1

Query  272  NNRRRELVFaaaaaaACSIANVAMGAED-PKAGTPEAKKKYAPICVTMPTARVC  114
            ++ RR+L+F AAAAA CS+A VAM  E+ PK GT   KKKYA +CVTM TA++C
Sbjct  47   HHMRRDLMFTAAAAAVCSLAKVAMAEEEEPKRGTEAGKKKYAQVCVTMRTAKIC  100


>gi|115446925|ref|NP_001047242.1|  Os02g0581100 [Oryza sativa (japonica cultivar-group)]
 gi|113536773|dbj|BAF09156.1|  Os02g0581100 [Oryza sativa (japonica cultivar-group)]
Length=119

 Score = 56.2 bits (134),  Expect = 3e-08
 Identities = 25/35 (71%), Positives = 27/35 (77%), Gaps = 0/35 (0%)
 Frame = -1

Query  215  ANVAMGAEDPKAGTPEAKKKYAPICVTMPTARVCH  111
            A+ A    D K GTPEAKKKYA ICVTMPTA+VCH
Sbjct  84   ASAAFAESDVKRGTPEAKKKYAQICVTMPTAKVCH  118


>gi|81475|pir||S03277  photosystem II 5K protein - spinach (fragment)
Length=29

 Score = 50.8 bits (120),  Expect = 1e-06
 Identities = 21/29 (72%), Positives = 26/29 (89%), Gaps = 0/29 (0%)
 Frame = -1

Query  194  EDPKAGTPEAKKKYAPICVTMPTARVCHK  108
            E+PK GTPEAKKKYAP+ VTMP+AR+ +K
Sbjct  1    EEPKRGTPEAKKKYAPVXVTMPSARIXYK  29


>gi|50251714|dbj|BAD27635.1|  unknown protein [Oryza sativa (japonica cultivar-group)]
Length=178

 Score = 48.1 bits (113),  Expect = 9e-06
 Identities = 22/32 (68%), Positives = 24/32 (75%), Gaps = 0/32 (0%)
 Frame = -1

Query  215  ANVAMGAEDPKAGTPEAKKKYAPICVTMPTAR  120
            A+ A    D K GTPEAKKKYA ICVTMPTA+
Sbjct  84   ASAAFAESDVKRGTPEAKKKYAQICVTMPTAK  115


>gi|62320142|dbj|BAD94339.1|  hypothetical protein [Arabidopsis thaliana]
Length=108

 Score = 41.2 bits (95),  Expect = 0.001
 Identities = 19/23 (82%), Positives = 20/23 (86%), Gaps = 0/23 (0%)
 Frame = +1

Query  127  VGIVTQIGAYFFLASGVPAFGSS  195
            VGIVTQ GAYFFLA+ VP FGSS
Sbjct  1    VGIVTQTGAYFFLAASVPLFGSS  23


>gi|52076786|dbj|BAD45730.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
 gi|52076961|dbj|BAD45971.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length=375

 Score = 29.3 bits (64),  Expect = 4.4
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 7/29 (24%)
 Frame = +2

Query  167  LLVSQP-------LDLPHPWQRLQWSKQQ  232
            LLVS P       LDLP  W+ + WS+QQ
Sbjct  96   LLVSDPMTGADRLLDLPERWRNIHWSEQQ  124


>gi|79577677|ref|NP_680175.2|  unknown protein [Arabidopsis thaliana]
 gi|50897234|gb|AAT85756.1|  At5g20635 [Arabidopsis thaliana]
 gi|62320737|dbj|BAD95404.1|  putative protein [Arabidopsis thaliana]
Length=251

 Score = 28.1 bits (61),  Expect = 9.7
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = -3

Query  246  CSRSSCCLLHCKRCHGCGRSKGWDTRS*EKVCSYLCDDAYSSCVS  112
            C   SCC+  C R   C R    + +     CS  C   +SSC S
Sbjct  182  CPDMSCCIPSCFRSCSCTRPSCLNKKK-SSCCSCNCKIRWSSCFS  225


>gi|15225876|ref|NP_180308.1|  rhodopsin-like receptor/ structural constituent of cell wall 
[Arabidopsis thaliana]
 gi|5306259|gb|AAD41991.1|  hypothetical protein [Arabidopsis thaliana]
 gi|20197652|gb|AAM15178.1|  hypothetical protein [Arabidopsis thaliana]
 gi|38454086|gb|AAR20737.1|  At2g27390 [Arabidopsis thaliana]
 gi|45592906|gb|AAS68107.1|  At2g27390 [Arabidopsis thaliana]
Length=134

 Score = 28.1 bits (61),  Expect = 9.7
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
 Frame = +3

Query  204  GNVCNGASSSCCGCKNQLPPPIVAPLLQFPAP  299
            GN+  G + +CC      PPP+V PLL    P
Sbjct  17   GNLPPGTTGTCC------PPPLVFPLLPLSPP  42

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 224
Number of extensions: 16
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 362
Length of database: 101054579
Length adjustment: 87
Effective length of query: 275
Effective length of database: 76403216
Effective search space: 2521306128
Effective search space used: 2521306128
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 61 (28.1 bits)