RID=1168926843-13907-13103476658.BLASTQ1, Contig24

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168926843-13907-13103476658.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig24
Length=422

Distribution of 20 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|3695061|gb|AAC62625.1|  rac GTPase activating protein 2 [Lotus  92.4    5e-19 
gi|116309679|emb|CAH66727.1|  H0404F02.3 [Oryza sativa (indica cu  53.5    2e-07
gi|115460060|ref|NP_001053630.1|  Os04g0577200 [Oryza sativa (...  53.5    2e-07 
gi|115447915|ref|NP_001047737.1|  Os02g0679500 [Oryza sativa (...  46.6    3e-05 
gi|34451568|gb|AAQ72348.1|  Rho GTPase activating protein 2 [O...  46.6    3e-05 
gi|50253132|dbj|BAD29378.1|  putative Rho GTPase activating pr...  46.6    3e-05
gi|3831445|gb|AAC69928.1|  putative rac GTPase activating protein  38.1    0.011
gi|30690481|ref|NP_850458.1|  Rac GTPase activator [Arabidopsi...  38.1    0.011 
gi|31790111|gb|AAP58374.1|  RPA 32kDa [Pisum sativum]              32.0    0.75 
gi|15242461|ref|NP_196523.1|  RNA binding [Arabidopsis thalian...  29.6    3.7   
gi|116831052|gb|ABK28481.1|  unknown [Arabidopsis thaliana]        29.3    4.9  
gi|91806135|gb|ABE65796.1|  MADS-box family protein [Arabidopsis   29.3    4.9   
gi|32402428|gb|AAN52796.1|  MADS-box protein AGL30 [Arabidopsis t  29.3    4.9   
gi|15227526|ref|NP_178406.1|  DNA binding / transcription fact...  29.3    4.9   
gi|105923251|gb|ABF81466.1|  TIR-NBS type disease resistance prot  28.9    6.4  
gi|7433568|pir||T11574  phosphoribosylglycinamide formyltransf...  28.9    6.4  
gi|12644307|sp|P52423|PUR3_VIGUN  Phosphoribosylglycinamide fo...  28.9    6.4  
gi|115444371|ref|NP_001045965.1|  Os02g0159900 [Oryza sativa (...  28.5    8.3   
gi|15241451|ref|NP_199239.1|  nucleic acid binding / transcrip...  28.5    8.3   
gi|15241412|ref|NP_199939.1|  acid phosphatase [Arabidopsis th...  28.5    8.3

Alignments

 

>gi|3695061|gb|AAC62625.1|  rac GTPase activating protein 2 [Lotus japonicus]
Length=424

 Score = 92.4 bits (228),  Expect = 5e-19
 Identities = 46/69 (66%), Positives = 53/69 (76%), Gaps = 0/69 (0%)
 Frame = -3

Query  402  SDNSTPNACEMGTVENECRGGYDNGDRLSLRKGVRRLCRHPVFQLSKSTKKTRNLGIVNT  223
            S  S+P+  E G +E+  RG YD+   L LRKGVRRLC+HPVFQLSKSTKK  +LGIVNT
Sbjct  356  SGGSSPSRYESGPLESRYRGIYDSEHWLRLRKGVRRLCQHPVFQLSKSTKKRADLGIVNT  415

Query  222  RGGGGEAWA  196
            R GGGEAWA
Sbjct  416  REGGGEAWA  424


>gi|116309679|emb|CAH66727.1|  H0404F02.3 [Oryza sativa (indica cultivar-group)]
Length=479

 Score = 53.5 bits (127),  Expect = 2e-07
 Identities = 23/43 (53%), Positives = 31/43 (72%), Gaps = 0/43 (0%)
 Frame = -3

Query  327  DRLSLRKGVRRLCRHPVFQLSKSTKKTRNLGIVNTRGGGGEAW  199
            D+ S RKGV RLCRHPVFQLS+S KK+ ++ + +  G   +AW
Sbjct  434  DKFSFRKGVERLCRHPVFQLSRSMKKSADVVVFDAPGEARQAW  476


>gi|115460060|ref|NP_001053630.1|  Os04g0577200 [Oryza sativa (japonica cultivar-group)]
 gi|38345536|emb|CAD41306.2|  OSJNBa0020J04.11 [Oryza sativa (japonica cultivar-group)]
 gi|113565201|dbj|BAF15544.1|  Os04g0577200 [Oryza sativa (japonica cultivar-group)]
Length=479

 Score = 53.5 bits (127),  Expect = 2e-07
 Identities = 23/43 (53%), Positives = 31/43 (72%), Gaps = 0/43 (0%)
 Frame = -3

Query  327  DRLSLRKGVRRLCRHPVFQLSKSTKKTRNLGIVNTRGGGGEAW  199
            D+ S RKGV RLCRHPVFQLS+S KK+ ++ + +  G   +AW
Sbjct  434  DKFSFRKGVERLCRHPVFQLSRSMKKSADVVVFDAPGEARQAW  476


>gi|115447915|ref|NP_001047737.1|  Os02g0679500 [Oryza sativa (japonica cultivar-group)]
 gi|113537268|dbj|BAF09651.1|  Os02g0679500 [Oryza sativa (japonica cultivar-group)]
Length=483

 Score = 46.6 bits (109),  Expect = 3e-05
 Identities = 21/31 (67%), Positives = 23/31 (74%), Gaps = 0/31 (0%)
 Frame = -3

Query  327  DRLSLRKGVRRLCRHPVFQLSKSTKKTRNLG  235
            DR   RKGV RLCRHPVFQLS+S KK+   G
Sbjct  449  DRFKFRKGVGRLCRHPVFQLSRSMKKSGEAG  479


>gi|34451568|gb|AAQ72348.1|  Rho GTPase activating protein 2 [Oryza sativa (japonica cultivar-group)]
Length=439

 Score = 46.6 bits (109),  Expect = 3e-05
 Identities = 21/31 (67%), Positives = 23/31 (74%), Gaps = 0/31 (0%)
 Frame = -3

Query  327  DRLSLRKGVRRLCRHPVFQLSKSTKKTRNLG  235
            DR   RKGV RLCRHPVFQLS+S KK+   G
Sbjct  405  DRFKFRKGVGRLCRHPVFQLSRSMKKSGEAG  435


>gi|50253132|dbj|BAD29378.1|  putative Rho GTPase activating protein 2 [Oryza sativa (japonica 
cultivar-group)]
Length=326

 Score = 46.6 bits (109),  Expect = 3e-05
 Identities = 21/31 (67%), Positives = 23/31 (74%), Gaps = 0/31 (0%)
 Frame = -3

Query  327  DRLSLRKGVRRLCRHPVFQLSKSTKKTRNLG  235
            DR   RKGV RLCRHPVFQLS+S KK+   G
Sbjct  292  DRFKFRKGVGRLCRHPVFQLSRSMKKSGEAG  322


>gi|3831445|gb|AAC69928.1|  putative rac GTPase activating protein [Arabidopsis thaliana]
Length=301

 Score = 38.1 bits (87),  Expect = 0.011
 Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 7/39 (17%)
 Frame = -3

Query  303  VRRLCRHPVFQLSKSTKKTRNLGIVNTRG---GGGEAWA  196
            V+RLC+HP+FQLSKSTKK      V+ R     G EAW+
Sbjct  259  VQRLCKHPLFQLSKSTKK----AFVSNRDEGRKGREAWS  293


>gi|30690481|ref|NP_850458.1|  Rac GTPase activator [Arabidopsis thaliana]
 gi|26449717|dbj|BAC41982.1|  putative rac GTPase activating protein [Arabidopsis thaliana]
 gi|28951019|gb|AAO63433.1|  At2g46710 [Arabidopsis thaliana]
Length=455

 Score = 38.1 bits (87),  Expect = 0.011
 Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 7/39 (17%)
 Frame = -3

Query  303  VRRLCRHPVFQLSKSTKKTRNLGIVNTRG---GGGEAWA  196
            V+RLC+HP+FQLSKSTKK      V+ R     G EAW+
Sbjct  413  VQRLCKHPLFQLSKSTKK----AFVSNRDEGRKGREAWS  447


>gi|31790111|gb|AAP58374.1|  RPA 32kDa [Pisum sativum]
Length=273

 Score = 32.0 bits (71),  Expect = 0.75
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 0/33 (0%)
 Frame = +2

Query  284  CLHSRLTPFLKLSRSPLSYPPLHSFSTVPISHA  382
            C+HS L   +KL  +P +YPP +S    P+  A
Sbjct  157  CIHSHLLAKVKLEGTPSTYPPTNSSINTPVKSA  189


>gi|15242461|ref|NP_196523.1|  RNA binding [Arabidopsis thaliana]
 gi|7671428|emb|CAB89369.1|  putative protein [Arabidopsis thaliana]
 gi|9758989|dbj|BAB09516.1|  unnamed protein product [Arabidopsis thaliana]
Length=517

 Score = 29.6 bits (65),  Expect = 3.7
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
 Frame = +2

Query  137  SPQWSTSNI*TFQDESRMYHAQASPPPPLVFTIP---RFRVFLVDLLN*NTGCLHSRLTP  307
            +P ++ S++    D S  Y  +  PPPPL F  P   + R +L  LL+  T     R T 
Sbjct  172  APPFTPSSLTQPDDSSSRYSGKPFPPPPLSFVSPGVDKDRNWLSSLLDMMT--CAQRFTE  229

Query  308  FLKLSRSPLSYP  343
            F K  +   +YP
Sbjct  230  FQKYLQDLDTYP  241


>gi|116831052|gb|ABK28481.1|  unknown [Arabidopsis thaliana]
Length=387

 Score = 29.3 bits (64),  Expect = 4.9
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 0/23 (0%)
 Frame = +2

Query  188  MYHAQASPPPPLVFTIPRFRVFL  256
            M H Q  PPPPL  T+P  +V++
Sbjct  301  MNHHQTLPPPPLPLTLPHAQVYI  323


>gi|91806135|gb|ABE65796.1|  MADS-box family protein [Arabidopsis thaliana]
Length=386

 Score = 29.3 bits (64),  Expect = 4.9
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 0/23 (0%)
 Frame = +2

Query  188  MYHAQASPPPPLVFTIPRFRVFL  256
            M H Q  PPPPL  T+P  +V++
Sbjct  301  MNHHQTLPPPPLPLTLPHAQVYI  323


>gi|32402428|gb|AAN52796.1|  MADS-box protein AGL30 [Arabidopsis thaliana]
Length=304

 Score = 29.3 bits (64),  Expect = 4.9
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 0/23 (0%)
 Frame = +2

Query  188  MYHAQASPPPPLVFTIPRFRVFL  256
            M H Q  PPPPL  T+P  +V++
Sbjct  219  MNHHQTLPPPPLPLTLPHAQVYI  241


>gi|15227526|ref|NP_178406.1|  DNA binding / transcription factor [Arabidopsis thaliana]
 gi|20197096|gb|AAC32924.2|  homeotic protein AGL30 [Arabidopsis thaliana]
Length=337

 Score = 29.3 bits (64),  Expect = 4.9
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 0/23 (0%)
 Frame = +2

Query  188  MYHAQASPPPPLVFTIPRFRVFL  256
            M H Q  PPPPL  T+P  +V++
Sbjct  252  MNHHQTLPPPPLPLTLPHAQVYI  274


>gi|105923251|gb|ABF81466.1|  TIR-NBS type disease resistance protein [Populus trichocarpa]
Length=1432

 Score = 28.9 bits (63),  Expect = 6.4
 Identities = 11/18 (61%), Positives = 17/18 (94%), Gaps = 0/18 (0%)
 Frame = -3

Query  267  SKSTKKTRNLGIVNTRGG  214
            SK+T++TR+L +V+TRGG
Sbjct  737  SKATRRTRHLSLVDTRGG  754


>gi|7433568|pir||T11574  phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) - cowpea
Length=312

 Score = 28.9 bits (63),  Expect = 6.4
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +2

Query  284  CLHSRLTPFLKLSRSP--LSYPPLHSFSTVP  370
            C  S L P + + + P  L++PPLHS S+ P
Sbjct  11   CPKSSLAPSIPMVKQPFSLNFPPLHSLSSYP  41


>gi|12644307|sp|P52423|PUR3_VIGUN  Phosphoribosylglycinamide formyltransferase, chloroplast precursor 
(GART) (GAR transformylase) (5'-phosphoribosylglycinamide 
transformylase)
 gi|25990313|gb|AAD45353.2|AF160196_1  glycinamide ribonucleotide transformylase [Vigna unguiculata]
 gi|27777702|gb|AAA75367.2|  glycinamide ribonucleotide transformylase [Vigna unguiculata]
 gi|27922943|gb|AAO25114.1|  glycinamide ribonucleotide transformylase [Vigna unguiculata]
 gi|27922945|gb|AAO25115.1|  glycinamide ribonucleotide transformylase [Vigna unguiculata]
Length=312

 Score = 28.9 bits (63),  Expect = 6.4
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +2

Query  284  CLHSRLTPFLKLSRSP--LSYPPLHSFSTVP  370
            C  S L P + + + P  L++PPLHS S+ P
Sbjct  11   CPKSSLAPSIPMVKQPFSLNFPPLHSLSSYP  41


>gi|115444371|ref|NP_001045965.1|  Os02g0159900 [Oryza sativa (japonica cultivar-group)]
 gi|50251265|dbj|BAD28045.1|  putative SKD1 protein [Oryza sativa (japonica cultivar-group)]
 gi|113535496|dbj|BAF07879.1|  Os02g0159900 [Oryza sativa (japonica cultivar-group)]
Length=433

 Score = 28.5 bits (62),  Expect = 8.3
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 0/33 (0%)
 Frame = -3

Query  399  DNSTPNACEMGTVENECRGGYDNGDRLSLRKGV  301
            D++TP A      + +C GG D  DR  LR G+
Sbjct  79   DDATPPAAAAEEGKAKCGGGEDESDRAKLRAGL  111


>gi|15241451|ref|NP_199239.1|  nucleic acid binding / transcription factor [Arabidopsis thaliana]
 gi|10176881|dbj|BAB10111.1|  unnamed protein product [Arabidopsis thaliana]
 gi|14334450|gb|AAK59423.1|  unknown protein [Arabidopsis thaliana]
 gi|23296547|gb|AAN13124.1|  unknown protein [Arabidopsis thaliana]
Length=381

 Score = 28.5 bits (62),  Expect = 8.3
 Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 0/22 (0%)
 Frame = +2

Query  284  CLHSRLTPFLKLSRSPLSYPPL  349
            C HS  +  L LSRSP S PPL
Sbjct  200  CSHSPTSTLLNLSRSPSSSPPL  221


>gi|15241412|ref|NP_199939.1|  acid phosphatase [Arabidopsis thaliana]
 gi|8843863|dbj|BAA97389.1|  acid phosphatase [Arabidopsis thaliana]
 gi|62320502|dbj|BAD95053.1|  acid phosphatase [Arabidopsis thaliana]
 gi|87116594|gb|ABD19661.1|  At5g51260 [Arabidopsis thaliana]
Length=257

 Score = 28.5 bits (62),  Expect = 8.3
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
 Frame = -3

Query  366  TVENECRGGYDNGDRLSLRKGVRRLCRHPVFQLSKSTKKTRNLGI-VNTRGGGGEAWA  196
            TVEN    G+ N D+L LR       +H +  L KS K+   +      RG  G+ W+
Sbjct  181  TVENLINAGFQNWDKLILRSPEE---QHKMATLYKSEKRDEMVKEGYRIRGNSGDQWS  235

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 278
Number of extensions: 3
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 422
Length of database: 101054579
Length adjustment: 101
Effective length of query: 321
Effective length of database: 72436330
Effective search space: 2825016870
Effective search space used: 2825016870
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 61 (28.1 bits)