RID=1168939505-20942-164418481406.BLASTQ1, Contig244

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168939505-20942-164418481406.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig244
Length=689

Distribution of 19 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|115473055|ref|NP_001060126.1|  Os07g0585800 [Oryza sativa (...   193    1e-50 
gi|92870264|gb|ABE79585.1|  ETC complex I subunit conserved re...   186    1e-48
gi|21555571|gb|AAM63888.1|  unknown [Arabidopsis thaliana]          182    2e-48 
gi|15240784|ref|NP_201560.1|  FRO1 (FROSTBITE1) [Arabidopsis t...   182    2e-48 
gi|118197450|gb|ABK78688.1|  NADH-ubiquinone oxidoreductase re...   181    7e-48
gi|92880834|gb|ABE85858.1|  ETC complex I subunit conserved regio   169    9e-44
gi|34334026|gb|AAQ64640.1|  NADH:ubiquinone oxidoreductase 18 ...  92.4    1e-18 
gi|1352605|sp|P80268|NUO2_SOLTU  NADH-ubiquinone oxidoreductas...  52.0    2e-06
gi|51536396|dbj|BAD37589.1|  hypothetical protein [Oryza sativa (  50.4    6e-06
gi|539039|pir||H49732  NADH2 dehydrogenase (ubiquinone) (EC 1....  40.0    0.008
gi|9294353|dbj|BAB02250.1|  unnamed protein product [Arabidopsis   33.1    1.0  
gi|115443907|ref|NP_001045733.1|  Os02g0123300 [Oryza sativa (...  30.0    8.5   
gi|41053020|dbj|BAD07951.1|  putative Eukaryotic translation i...  30.0    8.5

Alignments

 

>gi|115473055|ref|NP_001060126.1|  Os07g0585800 [Oryza sativa (japonica cultivar-group)]
 gi|50509945|dbj|BAD30267.1|  NADH-ubiquinone oxidoreductase-related-like protein [Oryza sativa 
(japonica cultivar-group)]
 gi|113611662|dbj|BAF22040.1|  Os07g0585800 [Oryza sativa (japonica cultivar-group)]
Length=159

 Score =  193 bits (491),  Expect(2) = 1e-50
 Identities = 87/104 (83%), Positives = 101/104 (97%), Gaps = 0/104 (0%)
 Frame = +1

Query  130  SSDALVEAKPGEVGMVSGIPEEHLRRRVVIYSPARTATQQGSEKLGKWKINFMSTQKWEN  309
            +SDALVE KPGE+GMVSGIPEEHLRR+VVIYSPARTA+QQGS K+G+WKINF+STQKWEN
Sbjct  31   ASDALVEIKPGEIGMVSGIPEEHLRRKVVIYSPARTASQQGSGKVGRWKINFVSTQKWEN  90

Query  310  PLMGWTSTGDPYANVGEAGLSFDSEEAAKSFSERHGWDYVVKKR  441
            PLMGWTSTGDPYANVGEAGL+FDS ++AK+F+E+HGWDYVV+KR
Sbjct  91   PLMGWTSTGDPYANVGEAGLTFDSADSAKAFAEKHGWDYVVRKR  134


 Score = 26.9 bits (58),  Expect(2) = 1e-50
 Identities = 9/13 (69%), Positives = 11/13 (84%), Gaps = 0/13 (0%)
 Frame = +3

Query  459  RVKSYADNFKWEG  497
            + KSYA+NFKW G
Sbjct  140  KAKSYAENFKWRG  152


>gi|92870264|gb|ABE79585.1|  ETC complex I subunit conserved region [Medicago truncatula]
 gi|92873913|gb|ABE82254.1|  ETC complex I subunit conserved region [Medicago truncatula]
Length=154

 Score =  186 bits (471),  Expect(2) = 1e-48
 Identities = 82/106 (77%), Positives = 99/106 (93%), Gaps = 0/106 (0%)
 Frame = +1

Query  121  RTFSSDALVEAKPGEVGMVSGIPEEHLRRRVVIYSPARTATQQGSEKLGKWKINFMSTQK  300
            R FS+DALVE+KPGE+G+VSGIP+EHLRRRV+IYSPARTA QQGS  +G+W+INF+STQK
Sbjct  21   RRFSTDALVESKPGEIGLVSGIPQEHLRRRVLIYSPARTAGQQGSGNVGRWRINFLSTQK  80

Query  301  WENPLMGWTSTGDPYANVGEAGLSFDSEEAAKSFSERHGWDYVVKK  438
            WENPLMGWTSTGDPY++VG++ L FD+EEAAK F+ERHGW+YVVKK
Sbjct  81   WENPLMGWTSTGDPYSHVGDSALDFDTEEAAKEFAERHGWEYVVKK  126


 Score = 28.1 bits (61),  Expect(2) = 1e-48
 Identities = 10/13 (76%), Positives = 12/13 (92%), Gaps = 0/13 (0%)
 Frame = +3

Query  459  RVKSYADNFKWEG  497
            +VK YADNFKW+G
Sbjct  133  KVKLYADNFKWKG  145


>gi|21555571|gb|AAM63888.1|  unknown [Arabidopsis thaliana]
Length=154

 Score =  182 bits (462),  Expect(2) = 2e-48
 Identities = 88/121 (72%), Positives = 103/121 (85%), Gaps = 3/121 (2%)
 Frame = +1

Query  94   VRTVLGSFSRTFSSDALVEA--KPGEVGMVSGIPEEHLRRRVVIYSPARTATQQGSEKLG  267
            +   L   +R F++DA+VE+  K GE+G VSGIPEEHL R+V+IYSPARTATQ GS KLG
Sbjct  13   IAATLRRVARPFATDAVVESDYKRGEIGKVSGIPEEHLSRKVIIYSPARTATQSGSGKLG  72

Query  268  KWKINFMSTQKWENPLMGWTSTGDPYANVGEAGLSFDSEEAAKSFSERHGWDYVVKKRPD  447
            KWKINF+ST KWENPLMGWTSTGDPYANVG++ L+FDSEEAAKSF+ERHGWDY VKK P+
Sbjct  73   KWKINFVSTLKWENPLMGWTSTGDPYANVGDSALAFDSEEAAKSFAERHGWDYKVKK-PN  131

Query  448  T  450
            T
Sbjct  132  T  132


 Score = 30.8 bits (68),  Expect(2) = 2e-48
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 0/22 (0%)
 Frame = +3

Query  435  KTPRHQC*RVKSYADNFKWEGD  500
            K P     +VKSY+DNFKW+G+
Sbjct  128  KKPNTPLLKVKSYSDNFKWKGN  149


>gi|15240784|ref|NP_201560.1|  FRO1 (FROSTBITE1) [Arabidopsis thaliana]
 gi|9757880|dbj|BAB08467.1|  unnamed protein product [Arabidopsis thaliana]
 gi|26452345|dbj|BAC43258.1|  unknown protein [Arabidopsis thaliana]
 gi|28372842|gb|AAO39903.1|  At5g67590 [Arabidopsis thaliana]
Length=154

 Score =  182 bits (462),  Expect(2) = 2e-48
 Identities = 88/121 (72%), Positives = 103/121 (85%), Gaps = 3/121 (2%)
 Frame = +1

Query  94   VRTVLGSFSRTFSSDALVEA--KPGEVGMVSGIPEEHLRRRVVIYSPARTATQQGSEKLG  267
            +   L   +R F++DA+VE+  K GE+G VSGIPEEHL R+V+IYSPARTATQ GS KLG
Sbjct  13   IAATLRRVARPFATDAVVESDYKRGEIGKVSGIPEEHLSRKVIIYSPARTATQSGSGKLG  72

Query  268  KWKINFMSTQKWENPLMGWTSTGDPYANVGEAGLSFDSEEAAKSFSERHGWDYVVKKRPD  447
            KWKINF+ST KWENPLMGWTSTGDPYANVG++ L+FDSEEAAKSF+ERHGWDY VKK P+
Sbjct  73   KWKINFVSTLKWENPLMGWTSTGDPYANVGDSALAFDSEEAAKSFAERHGWDYKVKK-PN  131

Query  448  T  450
            T
Sbjct  132  T  132


 Score = 30.8 bits (68),  Expect(2) = 2e-48
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 0/22 (0%)
 Frame = +3

Query  435  KTPRHQC*RVKSYADNFKWEGD  500
            K P     +VKSY+DNFKW+G+
Sbjct  128  KKPNTPLLKVKSYSDNFKWKGN  149


>gi|118197450|gb|ABK78688.1|  NADH-ubiquinone oxidoreductase related-like protein [Brassica 
rapa]
Length=153

 Score =  181 bits (460),  Expect(2) = 7e-48
 Identities = 86/109 (78%), Positives = 98/109 (89%), Gaps = 2/109 (1%)
 Frame = +1

Query  118  SRTFSSDALVEA--KPGEVGMVSGIPEEHLRRRVVIYSPARTATQQGSEKLGKWKINFMS  291
            +R FS+DA+VE+  K GE+G VSGIPEEHL R+V+IYSPARTATQQGS KLGKWKINF+S
Sbjct  20   ARPFSTDAVVESDYKRGEIGKVSGIPEEHLARKVIIYSPARTATQQGSGKLGKWKINFVS  79

Query  292  TQKWENPLMGWTSTGDPYANVGEAGLSFDSEEAAKSFSERHGWDYVVKK  438
            T KWENPLMGWTSTGDPYANVG++ L FDSE AAKSF+ERHGWDYVVK+
Sbjct  80   TLKWENPLMGWTSTGDPYANVGDSALGFDSELAAKSFAERHGWDYVVKE  128


 Score = 29.6 bits (65),  Expect(2) = 7e-48
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 0/21 (0%)
 Frame = +3

Query  435  KTPRHQC*RVKSYADNFKWEG  497
            K P+    + KSY+DNFKW+G
Sbjct  127  KEPKTPLLKAKSYSDNFKWKG  147


>gi|92880834|gb|ABE85858.1|  ETC complex I subunit conserved region [Medicago truncatula]
Length=186

 Score =  169 bits (428),  Expect(2) = 9e-44
 Identities = 82/138 (59%), Positives = 99/138 (71%), Gaps = 32/138 (23%)
 Frame = +1

Query  121  RTFSSDALVEAKPGEVGMVSGIPEEHLRRR------------------------------  210
            R FS+DALVE+KPGE+G+VSGIP+EHLRRR                              
Sbjct  21   RRFSTDALVESKPGEIGLVSGIPQEHLRRRILCNGLSLTGNADIVRLDTFTRVPSRDFAV  80

Query  211  --VVIYSPARTATQQGSEKLGKWKINFMSTQKWENPLMGWTSTGDPYANVGEAGLSFDSE  384
              V+IYSPARTA QQGS  +G+W+INF+STQKWENPLMGWTSTGDPY++VG++ L FD+E
Sbjct  81   VCVLIYSPARTAGQQGSGNVGRWRINFLSTQKWENPLMGWTSTGDPYSHVGDSALDFDTE  140

Query  385  EAAKSFSERHGWDYVVKK  438
            EAAK F+ERHGW+YVVKK
Sbjct  141  EAAKEFAERHGWEYVVKK  158


 Score = 28.1 bits (61),  Expect(2) = 9e-44
 Identities = 10/13 (76%), Positives = 12/13 (92%), Gaps = 0/13 (0%)
 Frame = +3

Query  459  RVKSYADNFKWEG  497
            +VK YADNFKW+G
Sbjct  165  KVKLYADNFKWKG  177


>gi|34334026|gb|AAQ64640.1|  NADH:ubiquinone oxidoreductase 18 kD-like subunit [Chlamydomonas 
reinhardtii]
Length=187

 Score = 92.4 bits (228),  Expect = 1e-18
 Identities = 45/99 (45%), Positives = 59/99 (59%), Gaps = 7/99 (7%)
 Frame = +1

Query  157  PGEVGMVSGIPEEHLRRRVVIYSPARTATQQGSEKL-------GKWKINFMSTQKWENPL  315
            P E G  +G+P +   R+  IY+PARTA+Q G  +          WKI F  T KW+NPL
Sbjct  47   PKEGGFTAGVPLDTFTRKARIYAPARTASQSGLARTVDFATTTPAWKIEFEPTAKWQNPL  106

Query  316  MGWTSTGDPYANVGEAGLSFDSEEAAKSFSERHGWDYVV  432
            MGWTS+ DP  NVG + L F ++E A  F E+ GW+Y V
Sbjct  107  MGWTSSADPLENVGRSALVFYTKEEAMRFCEKLGWEYEV  145


>gi|1352605|sp|P80268|NUO2_SOLTU  NADH-ubiquinone oxidoreductase 18 kDa subunit (Complex I-18kD) 
(CI-18kD)
Length=30

 Score = 52.0 bits (123),  Expect = 2e-06
 Identities = 24/30 (80%), Positives = 28/30 (93%), Gaps = 0/30 (0%)
 Frame = +1

Query  130  SSDALVEAKPGEVGMVSGIPEEHLRRRVVI  219
            +S+ALVE KPGE+GMVSGIP+EHLRR VVI
Sbjct  1    ASEALVEIKPGEIGMVSGIPDEHLRRFVVI  30


>gi|51536396|dbj|BAD37589.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length=138

 Score = 50.4 bits (119),  Expect = 6e-06
 Identities = 21/32 (65%), Positives = 30/32 (93%), Gaps = 0/32 (0%)
 Frame = +1

Query  130  SSDALVEAKPGEVGMVSGIPEEHLRRRVVIYS  225
            +SDALVE KPG++ MVSGIP+EHLRR+V++++
Sbjct  62   ASDALVEIKPGKISMVSGIPKEHLRRKVLLWT  93


>gi|539039|pir||H49732  NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) 18K chain - potato 
mitochondrion (fragment)
Length=22

 Score = 40.0 bits (92),  Expect = 0.008
 Identities = 17/22 (77%), Positives = 21/22 (95%), Gaps = 0/22 (0%)
 Frame = +1

Query  130  SSDALVEAKPGEVGMVSGIPEE  195
            +S+ALVE KPGE+GMVSGIP+E
Sbjct  1    ASEALVEIKPGEIGMVSGIPDE  22


>gi|9294353|dbj|BAB02250.1|  unnamed protein product [Arabidopsis thaliana]
Length=1213

 Score = 33.1 bits (74),  Expect = 1.0
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = -2

Query  169  RPRLAWPPPMHLKRTFSRKSPARFEPLEVGKLIFAPCSRRPSSSSEYL  26
            RPR     P+   R +S + P R  P EVG++I A CS   S+ S  +
Sbjct  406  RPRAR---PLFQYRHYSEQQPLRLNPAEVGEVIAAVCSEASSTPSNQM  450


>gi|115443907|ref|NP_001045733.1|  Os02g0123300 [Oryza sativa (japonica cultivar-group)]
 gi|113535264|dbj|BAF07647.1|  Os02g0123300 [Oryza sativa (japonica cultivar-group)]
Length=984

 Score = 30.0 bits (66),  Expect = 8.5
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 14/56 (25%)
 Frame = +1

Query  130  SSDALVEAKPGEVGMVSGIPEEHLRRRVVIYSPARTATQQGSEKLGKWKINFMSTQ  297
            S++   EAK G  G   G P            P R    Q S  LGKW+ NF+S+Q
Sbjct  873  SNERAYEAKTG--GTFEGAP------------PRRRGDAQDSSNLGKWQENFVSSQ  914


>gi|41053020|dbj|BAD07951.1|  putative Eukaryotic translation initiation factor 3 subunit 8 
[Oryza sativa (japonica cultivar-group)]
Length=927

 Score = 30.0 bits (66),  Expect = 8.5
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 14/56 (25%)
 Frame = +1

Query  130  SSDALVEAKPGEVGMVSGIPEEHLRRRVVIYSPARTATQQGSEKLGKWKINFMSTQ  297
            S++   EAK G  G   G P            P R    Q S  LGKW+ NF+S+Q
Sbjct  818  SNERAYEAKTG--GTFEGAP------------PRRRGDAQDSSNLGKWQENFVSSQ  859

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 549
Number of extensions: 6
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 689
Length of database: 101054579
Length adjustment: 109
Effective length of query: 580
Effective length of database: 70169538
Effective search space: 8420344560
Effective search space used: 8420344560
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 66 (30.0 bits)