Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168939640-31755-65678680215.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig250 Length=546
Score E Sequences producing significant alignments: (Bits) Value gi|15235226|ref|NP_192117.1| ASAR1; GTP binding [Arabidopsis ... 177 3e-44 gi|15228793|ref|NP_191815.1| GTP binding [Arabidopsis thalian... 174 2e-43 gi|77416955|gb|ABA81873.1| NtSar1 protein-like [Solanum tuberosu 174 2e-43 gi|46946656|gb|AAT06576.1| putative ras-like small GTP binding p 174 2e-43 gi|76573331|gb|ABA46770.1| small GTP-binding protein Sar1BNt-... 173 3e-43 gi|6563322|gb|AAF17254.1|AF210431_1 small GTP-binding protein Sa 173 4e-43 gi|115435714|ref|NP_001042615.1| Os01g0254000 [Oryza sativa (... 173 4e-43 gi|92875025|gb|ABE83200.1| Ras small GTPase, Ras type [Medicago 172 5e-43 gi|3450893|gb|AAC32610.1| ras-like small monomeric GTP-binding p 172 5e-43 gi|3334321|sp|O04266|SAR1A_BRACM GTP-binding protein SAR1A >g... 172 7e-43 gi|2935452|gb|AAC05127.1| GTP-binding protein Sar1 [Malus x dome 172 9e-43 gi|115436368|ref|NP_001042942.1| Os01g0338000 [Oryza sativa (... 172 9e-43 gi|1616612|emb|CAA69699.1| small GTP-binding protein [Nicotiana 171 1e-42 gi|1549222|dbj|BAA13463.1| NtSar1 protein [Nicotiana tabacum] 171 2e-42 gi|15223516|ref|NP_176029.1| SAR1 (SECRETION-ASSOCIATED RAS);... 171 2e-42 gi|115489058|ref|NP_001067016.1| Os12g0560300 [Oryza sativa (... 170 3e-42 gi|78191446|gb|ABB29944.1| GTPase-like [Solanum tuberosum] 166 5e-41 gi|1710851|sp|P52884|SAR2_LYCES GTP-binding protein SAR2 >gi|473 166 6e-41 gi|15217457|ref|NP_172390.1| ATSAR1/ATSARA1A; GTP binding [Ar... 163 3e-40 gi|3334322|sp|O04267|SAR1B_BRACM GTP-binding protein SAR1B >g... 162 5e-40 gi|77999253|gb|ABB16973.1| GTPase-like protein [Solanum tuberosu 160 2e-39 gi|15217820|ref|NP_171762.1| GTP binding [Arabidopsis thaliana] 157 3e-38 gi|1616616|emb|CAA69700.1| small GTP-binding protein [Nicotiana 154 2e-37 gi|116054948|emb|CAL57025.1| Vesicle coat complex COPII, GTPa... 150 3e-36 gi|115467188|ref|NP_001057193.1| Os06g0225000 [Oryza sativa (... 146 5e-35 gi|47499876|gb|AAT28676.1| small GTP-binding protein [Oryza s... 145 1e-34 gi|1710850|sp|P52885|SAR1_TOBAC GTP-binding protein SAR1 >gi|... 109 7e-24 gi|1184989|gb|AAA87886.1| NTGB2 [Nicotiana tabacum] 88.6 1e-17 gi|1563742|emb|CAA69398.1| GTP-binding protein [Nicotiana plumba 84.3 2e-16 gi|22331720|ref|NP_190556.2| ATARLA1C; GTP binding [Arabidops... 37.4 0.034 gi|1184991|gb|AAA87887.1| NTGB3 [Nicotiana tabacum] 35.4 0.13 gi|15229626|ref|NP_190555.1| ATARLA1B; GTP binding [Arabidops... 35.0 0.17 gi|18425204|ref|NP_569051.1| ATARLA1D; GTP binding [Arabidops... 35.0 0.17 gi|9757877|dbj|BAB08464.1| ADP-ribosylation factor-like protein 35.0 0.17 gi|115451383|ref|NP_001049292.1| Os03g0200800 [Oryza sativa (... 31.6 1.9 gi|18421676|ref|NP_568553.1| ATARLA1A; GTP binding [Arabidops... 30.4 4.2 gi|9757978|dbj|BAB08314.1| ADP-ribosylation factor-like protein 30.4 4.2 gi|6723432|emb|CAB66925.1| ADP-RIBOSYLATION FACTOR-like protein 30.0 5.5
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 312 Number of extensions: 4 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 546 Length of database: 101054579 Length adjustment: 106 Effective length of query: 440 Effective length of database: 71019585 Effective search space: 5397488460 Effective search space used: 5397488460 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 64 (29.3 bits)