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BLASTX 2.2.15 [Oct-15-2006] 
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman 
(1997), "Gapped BLAST and PSI-BLAST: a new generation of 
protein database search programs", Nucleic Acids Res. 25:3389-3402.

RID: 1168940519-30492-183347751680.BLASTQ1


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
           4,458,890 sequences; 1,532,996,420 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs
Taxonomy reports

Query=  Contig265
Length=216

Distribution of 9 Blast Hits on the Query Sequence


                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|110740812|dbj|BAE98503.1|  hypothetical protein [Arabidopsis t  50.1    2e-06
gi|15225598|ref|NP_181524.1|  unknown protein [Arabidopsis tha...  50.1    2e-06 UniGene infoGene info
gi|115470145|ref|NP_001058671.1|  Os07g0100500 [Oryza sativa (...  35.8    0.046 Gene info
gi|15220851|ref|NP_173784.1|  structural constituent of cell w...  29.3    4.3   UniGene infoGene info
gi|115468286|ref|NP_001057742.1|  Os06g0520600 [Oryza sativa (...  28.5    7.3   Gene info
gi|15450579|gb|AAK96561.1|  AT4g02920/T4I9_20 [Arabidopsis tha...  28.1    9.5   UniGene info
gi|21594458|gb|AAM66010.1|  unknown [Arabidopsis thaliana]         28.1    9.5   UniGene info
gi|3924613|gb|AAC79114.1|  hypothetical protein [Arabidopsis t...  28.1    9.5  
gi|18412085|ref|NP_567248.1|  unknown protein [Arabidopsis thalia  28.1    9.5   UniGene infoGene info
Alignments

>gi|110740812|dbj|BAE98503.1|  hypothetical protein [Arabidopsis thaliana]
Length=399

 Score = 50.1 bits (118),  Expect = 2e-06
 Identities = 34/60 (56%), Positives = 45/60 (75%), Gaps = 1/60 (1%)
 Frame = +1

Query  40   LGPPLFSPHYCWCPPGSSTLQ-HSAAAEFPTssieslklpplssilpANGASSLLKPTPP  216
            +GPP+FSP+YCWCPP +S+L   SA+ +FP  SIE   LPPLSS+LPA+G+   L P+ P
Sbjct  182  MGPPVFSPYYCWCPPTTSSLHAPSASYQFPPLSIELPSLPPLSSLLPASGSDGFLIPSSP  241


>gi|15225598|ref|NP_181524.1| UniGene infoGene info unknown protein [Arabidopsis thaliana]
 gi|2088648|gb|AAB95280.1| Gene info hypothetical protein [Arabidopsis thaliana]
Length=636

 Score = 50.1 bits (118),  Expect = 2e-06
 Identities = 34/60 (56%), Positives = 45/60 (75%), Gaps = 1/60 (1%)
 Frame = +1

Query  40   LGPPLFSPHYCWCPPGSSTLQ-HSAAAEFPTssieslklpplssilpANGASSLLKPTPP  216
            +GPP+FSP+YCWCPP +S+L   SA+ +FP  SIE   LPPLSS+LPA+G+   L P+ P
Sbjct  419  MGPPVFSPYYCWCPPTTSSLHAPSASYQFPPLSIELPSLPPLSSLLPASGSDGFLIPSSP  478


>gi|115470145|ref|NP_001058671.1| Gene info Os07g0100500 [Oryza sativa (japonica cultivar-group)]
 gi|50508913|dbj|BAD31818.1| Gene info unknown protein [Oryza sativa (japonica cultivar-group)]
 gi|113610207|dbj|BAF20585.1| Gene info Os07g0100500 [Oryza sativa (japonica cultivar-group)]
Length=503

 Score = 35.8 bits (81),  Expect = 0.046
 Identities = 12/18 (66%), Positives = 15/18 (83%), Gaps = 0/18 (0%)
 Frame = +1

Query  55   FSPHYCWCPPGSSTLQHS  108
            F P+YCWCPP  S+LQ+S
Sbjct  262  FKPYYCWCPPCPSSLQYS  279


>gi|15220851|ref|NP_173784.1| UniGene infoGene info structural constituent of cell wall [Arabidopsis thaliana]
 gi|4056454|gb|AAC98027.1| Gene info Contains repeated region with similarity to gb|U43627 extensin 
(atExt1) gene from Arabidopsis thaliana.  ESTs gb|Z34165 and 
gb|Z18788 come from this gene
Length=895

 Score = 29.3 bits (64),  Expect = 4.3
 Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
 Frame = +1

Query  4    PPTLSSVSQVSSLGPPLFSPHYCWCPPGSSTLQHSAAAEF  123
            PP  S   +V    PP   PH C CPP      HS   E+
Sbjct  518  PPYYSPSPKVIYKSPP--HPHVCVCPPPPPCYSHSPKIEY  555


>gi|115468286|ref|NP_001057742.1| Gene info Os06g0520600 [Oryza sativa (japonica cultivar-group)]
 gi|54291262|dbj|BAD62014.1| Gene info translation initiation factor eIF-4F isozyme form subunit p82-like 
[Oryza sativa (japonica cultivar-group)]
 gi|113595782|dbj|BAF19656.1| Gene info Os06g0520600 [Oryza sativa (japonica cultivar-group)]
Length=711

 Score = 28.5 bits (62),  Expect = 7.3
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 0/40 (0%)
 Frame = +2

Query  86   DHQLCNTQLLRSSQPHQLNLLSFHHFLQYCQQMVLPAC*N  205
            DH   N     S + HQ  + SFH  + Y +  +L  C N
Sbjct  212  DHGESNEHTFTSEEVHQPGIPSFHQRISYTRDQLLQLCQN  251


>gi|15450579|gb|AAK96561.1| UniGene info AT4g02920/T4I9_20 [Arabidopsis thaliana]
 gi|23308297|gb|AAN18118.1| UniGene info At4g02920/T4I9_20 [Arabidopsis thaliana]
Length=333

 Score = 28.1 bits (61),  Expect = 9.5
 Identities = 11/24 (45%), Positives = 19/24 (79%), Gaps = 2/24 (8%)
 Frame = +2

Query  71   VGAPQDHQLCNTQLLRSSQPHQLN  142
            +G PQD  LCNT+++++S+ H +N
Sbjct  17   LGLPQD--LCNTEIIKNSRSHLVN  38


>gi|21594458|gb|AAM66010.1| UniGene info unknown [Arabidopsis thaliana]
Length=418

 Score = 28.1 bits (61),  Expect = 9.5
 Identities = 11/24 (45%), Positives = 19/24 (79%), Gaps = 2/24 (8%)
 Frame = +2

Query  71   VGAPQDHQLCNTQLLRSSQPHQLN  142
            +G PQD  LCNT+++++S+ H +N
Sbjct  17   LGLPQD--LCNTEIIKNSRSHLVN  38


>gi|3924613|gb|AAC79114.1|  hypothetical protein [Arabidopsis thaliana]
 gi|4263512|gb|AAD15338.1|  hypothetical protein [Arabidopsis thaliana]
 gi|7269777|emb|CAB77777.1|  hypothetical protein [Arabidopsis thaliana]
Length=400

 Score = 28.1 bits (61),  Expect = 9.5
 Identities = 11/24 (45%), Positives = 19/24 (79%), Gaps = 2/24 (8%)
 Frame = +2

Query  71   VGAPQDHQLCNTQLLRSSQPHQLN  142
            +G PQD  LCNT+++++S+ H +N
Sbjct  30   LGLPQD--LCNTEIIKNSRSHLVN  51


>gi|18412085|ref|NP_567248.1| UniGene infoGene info unknown protein [Arabidopsis thaliana]
Length=418

 Score = 28.1 bits (61),  Expect = 9.5
 Identities = 11/24 (45%), Positives = 19/24 (79%), Gaps = 2/24 (8%)
 Frame = +2

Query  71   VGAPQDHQLCNTQLLRSSQPHQLN  142
            +G PQD  LCNT+++++S+ H +N
Sbjct  17   LGLPQD--LCNTEIIKNSRSHLVN  38







  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.311    0.127    0.413 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 179
Number of extensions: 5
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 216
Length of database: 101054579
Length adjustment: 44
Effective length of query: 172
Effective length of database: 88587223
Effective search space: 2480442244
Effective search space used: 2480442244
T: 12
A: 40
X1: 16 (7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 61 (28.1 bits)