Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168940987-16488-209230498292.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig277 Length=449
Score E Sequences producing significant alignments: (Bits) Value gi|78499692|gb|ABB45846.1| hypothetical protein [Thellungiella h 184 8e-47 gi|15239336|ref|NP_201430.1| unknown protein [Arabidopsis tha... 182 4e-46 gi|115455079|ref|NP_001051140.1| Os03g0727100 [Oryza sativa (... 173 2e-43 gi|26449649|dbj|BAC41949.1| unknown protein [Arabidopsis thalian 97.8 1e-20 gi|78707995|gb|ABB46970.1| V-type ATPase 116kDa subunit famil... 33.1 0.40 gi|18657017|gb|AAL78104.1|AC093568_14 Putative proton pump [Oryz 32.3 0.67 gi|1946369|gb|AAB63087.1| unknown protein [Arabidopsis thaliana] 32.3 0.67 gi|21537249|gb|AAM61590.1| unknown [Arabidopsis thaliana] 32.3 0.67 gi|3142302|gb|AAC16753.1| Strong similarity to myosin heavy c... 32.3 0.67 gi|42561681|ref|NP_171912.2| XIB [Arabidopsis thaliana] 32.3 0.67 gi|22652089|gb|AAN03605.1|AF405309_1 coiled-coil protein [Lycope 32.3 0.67 gi|42569471|ref|NP_180608.2| unknown protein [Arabidopsis tha... 32.3 0.67 gi|115460740|ref|NP_001053970.1| Os04g0629700 [Oryza sativa (... 31.2 1.5 gi|39546247|emb|CAE04256.3| OSJNBa0089N06.17 [Oryza sativa (japo 31.2 1.5 gi|48210048|gb|AAT40547.1| Putative plant disease resistant p... 30.8 2.0 gi|92889837|gb|ABE90049.1| hypothetical protein MtrDRAFT_AC14... 30.4 2.6 gi|22208516|gb|AAM94331.1| hypothetical protein [Sorghum bicolor 30.4 2.6 gi|8778739|gb|AAF79747.1|AC009317_6 T30E16.9 [Arabidopsis thalia 30.4 2.6 gi|15233766|ref|NP_194723.1| PRHA (PATHOGENESIS RELATED HOMEO... 30.4 2.6 gi|18406379|ref|NP_564744.1| ZCF125; ATP binding / microtubul... 30.4 2.6 gi|18394713|ref|NP_564076.1| unknown protein [Arabidopsis tha... 30.0 3.3 gi|116060285|emb|CAL55621.1| Myosin class II heavy chain (ISS) [ 29.6 4.4 gi|15238181|ref|NP_198994.1| CIP1 (COP1-INTERACTIVE PROTEIN 1... 29.6 4.4 gi|836950|gb|AAC49006.1| CIP1 >gi|1096881|prf||2112355A CIP1 pro 29.6 4.4 gi|116309878|emb|CAH66915.1| OSIGBa0126B18.8 [Oryza sativa (indi 28.9 7.5 gi|38344252|emb|CAE04334.2| OSJNBa0008M17.5 [Oryza sativa (japon 28.9 7.5 gi|11072026|gb|AAG28905.1|AC008113_21 F12A21.16 [Arabidopsis tha 28.9 7.5 gi|6714287|gb|AAF25983.1|AC013354_2 F15H18.10 [Arabidopsis thali 28.9 7.5 gi|18408838|ref|NP_564902.1| metalloendopeptidase [Arabidopsis t 28.9 7.5 gi|22329655|ref|NP_173277.2| ATP binding / microtubule motor [Ar 28.9 7.5 gi|116059848|emb|CAL55555.1| unnamed protein product [Ostreococc 28.5 9.7 gi|18377831|gb|AAL67102.1| AT3g07280/T1B9_5 [Arabidopsis thalian 28.5 9.7 gi|1438875|gb|AAC49373.1| violaxanthin de-epoxidase precursor 28.5 9.7 gi|87162792|gb|ABD28587.1| Prefoldin [Medicago truncatula] 28.5 9.7 gi|38636935|dbj|BAD03197.1| hypothetical protein [Oryza sativa ( 28.5 9.7 gi|15239939|ref|NP_196794.1| unknown protein [Arabidopsis tha... 28.5 9.7
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 230 Number of extensions: 1 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 449 Length of database: 101054579 Length adjustment: 103 Effective length of query: 346 Effective length of database: 71869632 Effective search space: 3306003072 Effective search space used: 3306003072 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 62 (28.5 bits)