RID=1168941001-643-169416394127.BLASTQ1, Contig278

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168941001-643-169416394127.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig278
Length=449

Distribution of 18 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|115440669|ref|NP_001044614.1|  Os01g0815700 [Oryza sativa (...   166    4e-41 
gi|37542393|gb|AAL09834.1|  ZnF_RBZ domain protein [Arabidopsis t   152    4e-37 
gi|15238027|ref|NP_197281.1|  VAR3 (VARIEGATED 3); binding [Ar...   151    1e-36 
gi|18700082|gb|AAL77653.1|  AT5g17790/MVA3_140 [Arabidopsis th...   149    4e-36 
gi|115488454|ref|NP_001066714.1|  Os12g0446500 [Oryza sativa (...  30.8    2.0   
gi|1402636|dbj|BAA13047.1|  nitrate reductase [Spinacia oleracea]  30.4    2.6  
gi|128198|sp|P23312|NIA_SPIOL  Nitrate reductase [NADH] (NR) >...  30.4    2.6  
gi|115454881|ref|NP_001051041.1|  Os03g0708900 [Oryza sativa (...  29.6    4.4   
gi|62733554|gb|AAX95671.1|  Zn-finger in Ran binding protein a...  29.6    4.4  
gi|53981182|gb|AAV24822.1|  hypothetical protein [Oryza sativa (j  28.9    7.5

Alignments

 

>gi|115440669|ref|NP_001044614.1|  Os01g0815700 [Oryza sativa (japonica cultivar-group)]
 gi|56785062|dbj|BAD82701.1|  putative ZnF_RBZ domain protein [Oryza sativa (japonica cultivar-group)]
 gi|113534145|dbj|BAF06528.1|  Os01g0815700 [Oryza sativa (japonica cultivar-group)]
Length=950

 Score =  166 bits (419),  Expect = 4e-41
 Identities = 80/93 (86%), Positives = 87/93 (93%), Gaps = 0/93 (0%)
 Frame = -2

Query  427  WSGKSLEGSAVKEPDPLDMSEEAKAERWFRRVAQIKDISELSQIPDEDFPSIMPMRKGVN  248
            ++GKSLEGSAVK+PDPLDMSEEAKAERWFRR AQIKDISEL+ IPDEDFP IMPMRKGVN
Sbjct  855  YTGKSLEGSAVKDPDPLDMSEEAKAERWFRRAAQIKDISELANIPDEDFPEIMPMRKGVN  914

Query  247  RFVVSKRKTPLERRLTSQQYRRNLPTVNSDPGK  149
            RFVVSKRKTPLERRLTS QYRRNLP V+S+P +
Sbjct  915  RFVVSKRKTPLERRLTSPQYRRNLPIVSSEPNE  947


 Score = 82.0 bits (201),  Expect = 7e-16
 Identities = 39/63 (61%), Positives = 49/63 (77%), Gaps = 1/63 (1%)
 Frame = -2

Query  364  EAKAERWFRRVAQIKDISELSQIP-DEDFPSIMPMRKGVNRFVVSKRKTPLERRLTSQQY  188
            + KAERW  +V+Q+ D ++LS +  DEDFP IMP+RKGVN+FVVS RKTPLERRL + QY
Sbjct  350  DQKAERWLNKVSQLDDSADLSSLAADEDFPEIMPIRKGVNKFVVSTRKTPLERRLANAQY  409

Query  187  RRN  179
              N
Sbjct  410  SSN  412


 Score = 65.1 bits (157),  Expect = 9e-11
 Identities = 34/89 (38%), Positives = 56/89 (62%), Gaps = 8/89 (8%)
 Frame = -2

Query  409  EGSAVKEPDPLDMSEEAKA----ERWFRRVAQIKDISEL-SQIPDEDFPSIMPMRKGVNR  245
            +  A  + D ++  ++ ++    E W ++VA++ ++ +  S I D+DFP IMPMRKG NR
Sbjct  498  DSMAKSQMDSMERRDDKRSFDTTEEWSKKVAELSNVKDFPSAISDQDFPEIMPMRKGENR  557

Query  244  FVVSKRKTPLERRLTSQQYRRNLPTVNSD  158
            FV+SK+K   +R LTS QY+R     ++D
Sbjct  558  FVISKKK---DRSLTSPQYKRRSVLEHAD  583


>gi|37542393|gb|AAL09834.1|  ZnF_RBZ domain protein [Arabidopsis thaliana]
Length=758

 Score =  152 bits (384),  Expect = 4e-37
 Identities = 76/93 (81%), Positives = 85/93 (91%), Gaps = 0/93 (0%)
 Frame = -2

Query  424  SGKSLEGSAVKEPDPLDMSEEAKAERWFRRVAQIKDISELSQIPDEDFPSIMPMRKGVNR  245
            +GKSLEGS VKEPD LDMSEEAKAERWF+RVA+IK+ISELS+IPDEDFPSIMPMRKGVNR
Sbjct  663  NGKSLEGSLVKEPDLLDMSEEAKAERWFKRVAEIKNISELSEIPDEDFPSIMPMRKGVNR  722

Query  244  FVVSKRKTPLERRLTSQQYRRNLPTVNSDPGKK  146
            FVVSKRKTPLERRLTSQ+++RN    +SDP  K
Sbjct  723  FVVSKRKTPLERRLTSQRHQRNPHITDSDPTGK  755


 Score = 72.0 bits (175),  Expect = 8e-13
 Identities = 41/79 (51%), Positives = 51/79 (64%), Gaps = 6/79 (7%)
 Frame = -2

Query  373  MSEEAKAERWFRRVAQIKDISELSQIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLTSQ  194
            +  E KA+RWF +VAQ    +  S   DEDFP IMP+RKGVNR+VVS RKTPLERRL + 
Sbjct  360  VENEKKAQRWFSKVAQGGSDAN-SVDTDEDFPEIMPLRKGVNRYVVSTRKTPLERRLANT  418

Query  193  QYRRNLPTVNSDPGKKESD  137
            +      +V +D   K SD
Sbjct  419  E-----NSVATDGSSKRSD  432


 Score = 59.3 bits (142),  Expect = 5e-09
 Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 6/82 (7%)
 Frame = -2

Query  418  KSLEGSAVKEPDPLDMSEEAKAE--RWFRRVAQIKDISEL-SQIPDEDFPSIMPMRKGVN  248
            KS    + KE D L+  +    E  RWF+RV ++ ++S+L S +P E  P  MPMRK  N
Sbjct  522  KSDANHSGKETDRLEKEDHKSEEPGRWFKRVTELHNVSDLESAMPQEISPEKMPMRKEEN  581

Query  247  RFVVSKRKTPLERRLTSQQYRR  182
            RFVVS++K   +R LTS  Y+R
Sbjct  582  RFVVSRKK---DRSLTSPAYKR  600


>gi|15238027|ref|NP_197281.1|  VAR3 (VARIEGATED 3); binding [Arabidopsis thaliana]
 gi|56749785|sp|Q8S9K3|VAR3_ARATH  Zinc finger protein VAR3, chloroplast precursor (VARIEGATED 3 
protein)
 gi|9759056|dbj|BAB09578.1|  unnamed protein product [Arabidopsis thaliana]
Length=758

 Score =  151 bits (381),  Expect = 1e-36
 Identities = 76/93 (81%), Positives = 84/93 (90%), Gaps = 0/93 (0%)
 Frame = -2

Query  424  SGKSLEGSAVKEPDPLDMSEEAKAERWFRRVAQIKDISELSQIPDEDFPSIMPMRKGVNR  245
            +GKSLEGS VKE D LDMSEEAKAERWF+RVA+IK+ISELS+IPDEDFPSIMPMRKGVNR
Sbjct  663  NGKSLEGSLVKESDLLDMSEEAKAERWFKRVAEIKNISELSEIPDEDFPSIMPMRKGVNR  722

Query  244  FVVSKRKTPLERRLTSQQYRRNLPTVNSDPGKK  146
            FVVSKRKTPLERRLTSQ+++RN    NSDP  K
Sbjct  723  FVVSKRKTPLERRLTSQRHQRNPHITNSDPTGK  755


 Score = 68.9 bits (167),  Expect = 7e-12
 Identities = 40/79 (50%), Positives = 49/79 (62%), Gaps = 6/79 (7%)
 Frame = -2

Query  373  MSEEAKAERWFRRVAQIKDISELSQIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLTSQ  194
            +  E KA+RW  +VAQ    +  S   DEDFP IMP+RKGVNR+VVS RK PLERRL + 
Sbjct  360  VENEKKAQRWLSKVAQGGSDAN-SVDTDEDFPEIMPLRKGVNRYVVSTRKPPLERRLANT  418

Query  193  QYRRNLPTVNSDPGKKESD  137
            + R     V +D   K SD
Sbjct  419  ENR-----VATDGNSKRSD  432


 Score = 63.5 bits (153),  Expect = 3e-10
 Identities = 38/82 (46%), Positives = 51/82 (62%), Gaps = 6/82 (7%)
 Frame = -2

Query  418  KSLEGSAVKEPDPLDMSEEAKAE--RWFRRVAQIKDISEL-SQIPDEDFPSIMPMRKGVN  248
            KS    + KE D L+  +    E  RWF+RV ++ ++S+L S IP E  P  MPMRKG N
Sbjct  522  KSDANHSGKETDRLEKEDHKSEEPARWFKRVTELHNVSDLESAIPQEISPEKMPMRKGEN  581

Query  247  RFVVSKRKTPLERRLTSQQYRR  182
            RFVVS++K   +R LTS  Y+R
Sbjct  582  RFVVSRKK---DRSLTSPAYKR  600


>gi|18700082|gb|AAL77653.1|  AT5g17790/MVA3_140 [Arabidopsis thaliana]
 gi|25090163|gb|AAN72244.1|  At5g17790/MVA3_140 [Arabidopsis thaliana]
Length=758

 Score =  149 bits (376),  Expect = 4e-36
 Identities = 75/93 (80%), Positives = 83/93 (89%), Gaps = 0/93 (0%)
 Frame = -2

Query  424  SGKSLEGSAVKEPDPLDMSEEAKAERWFRRVAQIKDISELSQIPDEDFPSIMPMRKGVNR  245
            +GK LEGS VKE D LDMSEEAKAERWF+RVA+IK+ISELS+IPDEDFPSIMPMRKGVNR
Sbjct  663  NGKRLEGSLVKESDLLDMSEEAKAERWFKRVAEIKNISELSEIPDEDFPSIMPMRKGVNR  722

Query  244  FVVSKRKTPLERRLTSQQYRRNLPTVNSDPGKK  146
            FVVSKRKTPLERRLTSQ+++RN    NSDP  K
Sbjct  723  FVVSKRKTPLERRLTSQRHQRNPHITNSDPTGK  755


 Score = 68.9 bits (167),  Expect = 7e-12
 Identities = 40/79 (50%), Positives = 49/79 (62%), Gaps = 6/79 (7%)
 Frame = -2

Query  373  MSEEAKAERWFRRVAQIKDISELSQIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLTSQ  194
            +  E KA+RW  +VAQ    +  S   DEDFP IMP+RKGVNR+VVS RK PLERRL + 
Sbjct  360  VENEKKAQRWLSKVAQGGSDAN-SVDTDEDFPEIMPLRKGVNRYVVSTRKPPLERRLANT  418

Query  193  QYRRNLPTVNSDPGKKESD  137
            + R     V +D   K SD
Sbjct  419  ENR-----VATDGNSKRSD  432


 Score = 63.5 bits (153),  Expect = 3e-10
 Identities = 38/82 (46%), Positives = 51/82 (62%), Gaps = 6/82 (7%)
 Frame = -2

Query  418  KSLEGSAVKEPDPLDMSEEAKAE--RWFRRVAQIKDISEL-SQIPDEDFPSIMPMRKGVN  248
            KS    + KE D L+  +    E  RWF+RV ++ ++S+L S IP E  P  MPMRKG N
Sbjct  522  KSDANHSGKETDRLEKEDHKSEEPARWFKRVTELHNVSDLESAIPQEISPEKMPMRKGEN  581

Query  247  RFVVSKRKTPLERRLTSQQYRR  182
            RFVVS++K   +R LTS  Y+R
Sbjct  582  RFVVSRKK---DRSLTSPAYKR  600


>gi|115488454|ref|NP_001066714.1|  Os12g0446500 [Oryza sativa (japonica cultivar-group)]
 gi|77555238|gb|ABA98034.1|  metallopeptidase family M24 containing protein, expressed [Oryza 
sativa (japonica cultivar-group)]
 gi|113649221|dbj|BAF29733.1|  Os12g0446500 [Oryza sativa (japonica cultivar-group)]
Length=1069

 Score = 30.8 bits (68),  Expect = 2.0
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 0/29 (0%)
 Frame = +1

Query  313  KCPLSGQHGETTSLLWPPPTCPMDLVPSP  399
            K   +G HG TT  + P P+C + LV SP
Sbjct  830  KLGFNGVHGRTTCFIVPTPSCLVQLVESP  858


>gi|1402636|dbj|BAA13047.1|  nitrate reductase [Spinacia oleracea]
Length=926

 Score = 30.4 bits (67),  Expect = 2.6
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 0/38 (0%)
 Frame = -2

Query  448  DQNVRSTWSGKSLEGSAVKEPDPLDMSEEAKAERWFRR  335
            D+N  + W+    +G++  EP  +D  +E  A++W  R
Sbjct  83   DENEMNVWNEMIKKGNSELEPSSVDSRDEGTADQWIER  120


>gi|128198|sp|P23312|NIA_SPIOL  Nitrate reductase [NADH] (NR)
 gi|170119|gb|AAA34033.1|  NADH nitrate reductase
Length=926

 Score = 30.4 bits (67),  Expect = 2.6
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 0/38 (0%)
 Frame = -2

Query  448  DQNVRSTWSGKSLEGSAVKEPDPLDMSEEAKAERWFRR  335
            D+N  + W+    +G++  EP  +D  +E  A++W  R
Sbjct  83   DENEMNVWNEMIKKGNSELEPSSVDSRDEGTADQWIER  120


>gi|115454881|ref|NP_001051041.1|  Os03g0708900 [Oryza sativa (japonica cultivar-group)]
 gi|108710694|gb|ABF98489.1|  Zn-finger in Ran binding protein and others containing protein, 
expressed [Oryza sativa (japonica cultivar-group)]
 gi|113549512|dbj|BAF12955.1|  Os03g0708900 [Oryza sativa (japonica cultivar-group)]
Length=504

 Score = 29.6 bits (65),  Expect = 4.4
 Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 13/95 (13%)
 Frame = -2

Query  445  QNVRSTWSGKSLEGSAVKEPDPLDMSEEAKAERWFRRVAQ------------IKDISELS  302
            +N R     +S + S  +E D  D  E  +     R  A                I E  
Sbjct  405  RNTRGADRSRSFDDSFDREDDGSDPDEGERRRAKVRTRAASTLGRSTGKSKIFDSIHEDG  464

Query  301  QIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLTS  197
               ++D   ++P  +G  R +VSKR TP +RR T+
Sbjct  465  NGREDDSEDVLPY-EGQRRHIVSKRATPAQRRFTA  498


>gi|62733554|gb|AAX95671.1|  Zn-finger in Ran binding protein and others, putative [Oryza 
sativa (japonica cultivar-group)]
Length=532

 Score = 29.6 bits (65),  Expect = 4.4
 Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 13/95 (13%)
 Frame = -2

Query  445  QNVRSTWSGKSLEGSAVKEPDPLDMSEEAKAERWFRRVAQ------------IKDISELS  302
            +N R     +S + S  +E D  D  E  +     R  A                I E  
Sbjct  433  RNTRGADRSRSFDDSFDREDDGSDPDEGERRRAKVRTRAASTLGRSTGKSKIFDSIHEDG  492

Query  301  QIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLTS  197
               ++D   ++P  +G  R +VSKR TP +RR T+
Sbjct  493  NGREDDSEDVLPY-EGQRRHIVSKRATPAQRRFTA  526


>gi|53981182|gb|AAV24822.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length=1136

 Score = 28.9 bits (63),  Expect = 7.5
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 7/37 (18%)
 Frame = +2

Query  164  VHSWKISPILLGCQ------PPLQWCFPLANDKPIHP  256
            +H W I P LLG        PP  WCF L +  PI P
Sbjct  869  LHGWPIMPPLLGVYVFTDRPPPADWCFRL-HGWPIMP  904

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 372
Number of extensions: 10
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 449
Length of database: 101054579
Length adjustment: 103
Effective length of query: 346
Effective length of database: 71869632
Effective search space: 3306003072
Effective search space used: 3306003072
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 62 (28.5 bits)