Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168926447-28710-38186545091.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig3 Length=354
Score E Sequences producing significant alignments: (Bits) Value gi|21536528|gb|AAM60860.1| 4-methyl-5(b-hydroxyethyl)-thiazol... 140 2e-33 gi|18404397|ref|NP_564626.1| unknown protein [Arabidopsis tha... 140 2e-33 gi|15232455|ref|NP_188117.1| catalytic [Arabidopsis thaliana]... 120 1e-27 gi|30683408|ref|NP_850588.1| catalytic [Arabidopsis thaliana]... 120 1e-27 gi|115468368|ref|NP_001057783.1| Os06g0531200 [Oryza sativa (... 118 7e-27 gi|53791962|dbj|BAD54224.1| putative 4-methyl-5(B-hydroxyethy... 118 7e-27 gi|33149230|gb|AAP96742.1| ThiJ-like protein [Brassica rapa subs 116 3e-26 gi|115435298|ref|NP_001042407.1| Os01g0217800 [Oryza sativa (... 108 6e-24 gi|56201615|dbj|BAD73062.1| putative 4-methyl-5(B-hydroxyethy... 108 6e-24 gi|115435296|ref|NP_001042406.1| Os01g0217500 [Oryza sativa (... 82.8 3e-16 gi|50080322|gb|AAT69656.1| 'unknown protein, similar to DJ-1/... 78.6 6e-15 gi|22329146|ref|NP_195128.2| unknown protein [Arabidopsis tha... 62.0 6e-10 gi|79326279|ref|NP_001031787.1| unknown protein [Arabidopsis tha 62.0 6e-10 gi|62319084|dbj|BAD94229.1| hypothetical protein [Arabidopsis th 53.1 3e-07 gi|62319406|dbj|BAD94736.1| 4-methyl-5(b-hydroxyethyl)-thiazo... 51.6 8e-07 gi|23321215|gb|AAN23110.1| thiJ-like protein [Brassica rapa subs 50.8 1e-06 gi|116060432|emb|CAL55768.1| unnamed protein product [Ostreococc 50.4 2e-06 gi|2911060|emb|CAA17570.1| putative protein [Arabidopsis thal... 48.9 5e-06 gi|91940104|gb|ABE66393.1| unknown [Striga asiatica] 32.7 0.40 gi|71834750|gb|AAZ41840.1| 80C09_29 [Brassica rapa subsp. pekine 32.3 0.52 gi|15219822|ref|NP_176283.1| unknown protein [Arabidopsis tha... 29.3 4.4 gi|12323292|gb|AAG51624.1|AC012193_6 putative phorbol ester /... 28.9 5.7 gi|77550958|gb|ABA93755.1| hypothetical protein LOC_Os11g3020... 28.9 5.7 gi|42563295|ref|NP_177903.4| protein binding / zinc ion binding 28.9 5.7 gi|53791608|dbj|BAD54739.1| hypothetical protein [Oryza sativa ( 28.9 5.7 gi|24414077|dbj|BAC22325.1| hypothetical protein [Oryza sativa ( 28.9 5.7 gi|3925363|gb|AAC79430.1| homeodomain protein [Malus x domestica 28.5 7.5 gi|37806075|dbj|BAC99526.1| hypothetical protein [Oryza sativa ( 28.5 7.5 gi|108708241|gb|ABF96036.1| F-box domain containing protein [... 28.1 9.8 gi|108796755|ref|YP_636527.1| hypothetical chloroplast RF62 [... 28.1 9.8
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 244 Number of extensions: 6 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 354 Length of database: 101054579 Length adjustment: 85 Effective length of query: 269 Effective length of database: 76969914 Effective search space: 2540007162 Effective search space used: 2540007162 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 61 (28.1 bits)