RID=1168927255-5076-102100963739.BLASTQ1, Contig34

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168927255-5076-102100963739.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig34
Length=649

Distribution of 13 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|9857529|gb|AAG00884.1|AC064879_2  Hypothetical protein [Arabid   127    3e-29
gi|18378951|ref|NP_563649.1|  unknown protein [Arabidopsis thalia   127    5e-29 
gi|13937157|gb|AAK50072.1|AF372932_1  At1g02330/T6A9_12 [Arabi...   120    6e-27 
gi|115453221|ref|NP_001050211.1|  Os03g0374100 [Oryza sativa (...   101    2e-21 
gi|115444733|ref|NP_001046146.1|  Os02g0189900 [Oryza sativa (...  50.1    7e-06 
gi|53793462|dbj|BAD53222.1|  translation initiation factor if-...  32.7    1.2  
gi|15241358|ref|NP_197547.1|  motor [Arabidopsis thaliana]         31.6    2.6   
gi|13649854|gb|AAK37493.1|  teosinte branched1 protein [Arundinel  30.4    5.8  
gi|108862291|gb|ABA96637.2|  retrotransposon protein, putative...  30.0    7.6  
gi|7594564|emb|CAB88131.1|  putative protein [Arabidopsis thalian  30.0    7.6

Alignments

 

>gi|9857529|gb|AAG00884.1|AC064879_2  Hypothetical protein [Arabidopsis thaliana]
Length=178

 Score =  127 bits (320),  Expect = 3e-29
 Identities = 61/86 (70%), Positives = 72/86 (83%), Gaps = 0/86 (0%)
 Frame = -1

Query  643  KDPFAKKPPSWLRIPTMVKYVEQELAKKRGRNMDTKTEVENDLTRAEDELYKIPEHLKVK  464
            +D FA++    +  P MVKY+EQELAKKRGRN+D   EVEN+L R EDELYKIP+HLKVK
Sbjct  85   QDTFAQETAVLIEDPNMVKYIEQELAKKRGRNIDDAEEVENELKRVEDELYKIPDHLKVK  144

Query  463  RRNSEESSTQWTTGIAEVQLPIEYAF  386
            +R+SEESSTQWTTGIAEVQLPIEY +
Sbjct  145  KRSSEESSTQWTTGIAEVQLPIEYEY  170


>gi|18378951|ref|NP_563649.1|  unknown protein [Arabidopsis thaliana]
Length=279

 Score =  127 bits (318),  Expect = 5e-29
 Identities = 61/84 (72%), Positives = 71/84 (84%), Gaps = 0/84 (0%)
 Frame = -1

Query  643  KDPFAKKPPSWLRIPTMVKYVEQELAKKRGRNMDTKTEVENDLTRAEDELYKIPEHLKVK  464
            +D FA++    +  P MVKY+EQELAKKRGRN+D   EVEN+L R EDELYKIP+HLKVK
Sbjct  85   QDTFAQETAVLIEDPNMVKYIEQELAKKRGRNIDDAEEVENELKRVEDELYKIPDHLKVK  144

Query  463  RRNSEESSTQWTTGIAEVQLPIEY  392
            +R+SEESSTQWTTGIAEVQLPIEY
Sbjct  145  KRSSEESSTQWTTGIAEVQLPIEY  168


 Score =  102 bits (255),  Expect = 9e-22
 Identities = 49/55 (89%), Positives = 53/55 (96%), Gaps = 0/55 (0%)
 Frame = -3

Query  167  YKLRNIEETEAAKKLLQEKRLMGRAKSEVSIPSSFSADYFQRGRDYAEKLRREHP  3
            YKL+NIEETEAAKKLLQE+RLMGR KSE SIPSS+SADYFQRG+DYAEKLRREHP
Sbjct  168  YKLKNIEETEAAKKLLQERRLMGRPKSEFSIPSSYSADYFQRGKDYAEKLRREHP  222


>gi|13937157|gb|AAK50072.1|AF372932_1  At1g02330/T6A9_12 [Arabidopsis thaliana]
 gi|22137212|gb|AAM91451.1|  At1g02330/T6A9_12 [Arabidopsis thaliana]
Length=179

 Score =  120 bits (300),  Expect = 6e-27
 Identities = 57/68 (83%), Positives = 63/68 (92%), Gaps = 0/68 (0%)
 Frame = -1

Query  595  MVKYVEQELAKKRGRNMDTKTEVENDLTRAEDELYKIPEHLKVKRRNSEESSTQWTTGIA  416
            MVKY+EQELAKKRGRN+D   EVEN+L R EDELYKIP+HLKVK+R+SEESSTQWTTGIA
Sbjct  1    MVKYIEQELAKKRGRNIDDAEEVENELKRVEDELYKIPDHLKVKKRSSEESSTQWTTGIA  60

Query  415  EVQLPIEY  392
            EVQLPIEY
Sbjct  61   EVQLPIEY  68


 Score =  102 bits (255),  Expect = 9e-22
 Identities = 49/55 (89%), Positives = 53/55 (96%), Gaps = 0/55 (0%)
 Frame = -3

Query  167  YKLRNIEETEAAKKLLQEKRLMGRAKSEVSIPSSFSADYFQRGRDYAEKLRREHP  3
            YKL+NIEETEAAKKLLQE+RLMGR KSE SIPSS+SADYFQRG+DYAEKLRREHP
Sbjct  68   YKLKNIEETEAAKKLLQERRLMGRPKSEFSIPSSYSADYFQRGKDYAEKLRREHP  122


>gi|115453221|ref|NP_001050211.1|  Os03g0374100 [Oryza sativa (japonica cultivar-group)]
 gi|31249717|gb|AAP46210.1|  unknown protein [Oryza sativa (japonica cultivar-group)]
 gi|108708408|gb|ABF96203.1|  Hepatocellular carcinoma-associated antigen 59 family protein, 
expressed [Oryza sativa (japonica cultivar-group)]
 gi|113548682|dbj|BAF12125.1|  Os03g0374100 [Oryza sativa (japonica cultivar-group)]
Length=277

 Score =  101 bits (252),  Expect = 2e-21
 Identities = 49/84 (58%), Positives = 63/84 (75%), Gaps = 3/84 (3%)
 Frame = -1

Query  643  KDPFAKKPPSWLRIPTMVKYVEQELAKKRGRNMDTKTEVENDLTRAEDELYKIPEHLKVK  464
            +D FA++    +  P M++YVE EL KKRG+ +D K + E D     DELY +P+HLKV+
Sbjct  89   QDTFAQETAVTIEDPNMLRYVENELLKKRGKKVDVKDKEEKDQV---DELYTVPDHLKVR  145

Query  463  RRNSEESSTQWTTGIAEVQLPIEY  392
            ++NSEESSTQWTTGIAEVQLPIEY
Sbjct  146  KKNSEESSTQWTTGIAEVQLPIEY  169


 Score = 93.2 bits (230),  Expect = 7e-19
 Identities = 42/55 (76%), Positives = 50/55 (90%), Gaps = 0/55 (0%)
 Frame = -3

Query  167  YKLRNIEETEAAKKLLQEKRLMGRAKSEVSIPSSFSADYFQRGRDYAEKLRREHP  3
            YKLRNIEETEAAKK+LQEKRL G+ KS+ +IPSS++AD+F RG+DY EKLRREHP
Sbjct  169  YKLRNIEETEAAKKMLQEKRLAGKTKSDANIPSSYNADFFHRGKDYTEKLRREHP  223


>gi|115444733|ref|NP_001046146.1|  Os02g0189900 [Oryza sativa (japonica cultivar-group)]
 gi|113535677|dbj|BAF08060.1|  Os02g0189900 [Oryza sativa (japonica cultivar-group)]
Length=105

 Score = 50.1 bits (118),  Expect = 7e-06
 Identities = 25/33 (75%), Positives = 29/33 (87%), Gaps = 1/33 (3%)
 Frame = -1

Query  487  IPEHLKVKRRNSEESSTQWTTGIAEVQLPIEYA  389
            + +HLKV R+NSEESSTQWTTGIAEVQ PI+ A
Sbjct  3    VADHLKV-RKNSEESSTQWTTGIAEVQPPIKSA  34


>gi|53793462|dbj|BAD53222.1|  translation initiation factor if-2-like [Oryza sativa (japonica 
cultivar-group)]
Length=961

 Score = 32.7 bits (73),  Expect = 1.2
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
 Frame = -1

Query  631  AKKPPSWLRI--PTMVKYVEQELAKKRGRNMDTKTEVENDLTRAEDELYKIPEHLKVKRR  458
            AKKPP  +R+    + K  E E  +KR   +  +   E  L R EDE  ++ E +K++++
Sbjct  166  AKKPPRHVRVMLEVLAKRKEAEELRKREEELRKRKAEEERLQREEDE--RMVEEMKMQQK  223

Query  457  NSEESST  437
              ++  T
Sbjct  224  ERDKGKT  230


>gi|15241358|ref|NP_197547.1|  motor [Arabidopsis thaliana]
Length=556

 Score = 31.6 bits (70),  Expect = 2.6
 Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = -1

Query  589  KYVEQELAKKRGRNMDTKTEVENDLTRAEDELYKIPEHLKVKRRNSE  449
            +++E+  ++   RN +  TE+EN  TR  D+L++  + L+ K  NSE
Sbjct  212  EHLEKAFSETEARNSELATELEN-ATRKADQLHESVQRLEEKLSNSE  257


>gi|13649854|gb|AAK37493.1|  teosinte branched1 protein [Arundinella hirta]
Length=346

 Score = 30.4 bits (67),  Expect = 5.8
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 0/29 (0%)
 Frame = +1

Query  535  FLYPCSSPFSSLILALHILPWLGSSTMTA  621
            F YPCS PF++   + H+   LGS+  TA
Sbjct  40   FSYPCSPPFAAADASFHLSYQLGSAAATA  68


>gi|108862291|gb|ABA96637.2|  retrotransposon protein, putative, Ty1-copia subclass [Oryza 
sativa (japonica cultivar-group)]
Length=817

 Score = 30.0 bits (66),  Expect = 7.6
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 0/39 (0%)
 Frame = -1

Query  631  AKKPPSWLRIPTMVKYVEQELAKKRGRNMDTKTEVENDL  515
            AK PPSW    T +K+  QE +KK         +V+ D+
Sbjct  151  AKLPPSWSDFATSLKHKRQEFSKKNPHASHNNKKVKPDV  189


>gi|7594564|emb|CAB88131.1|  putative protein [Arabidopsis thaliana]
Length=775

 Score = 30.0 bits (66),  Expect = 7.6
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
 Frame = -1

Query  577  QELAKKRGRNMDTKTEV---ENDLTRAEDELYKIPEHLKVKRR  458
            QE  +++ R + T+TE+   +   T    ELY+IPE L+V RR
Sbjct  586  QETVQRKFREVLTETELLACDYIRTPTRQELYRIPERLQVDRR  628

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 437
Number of extensions: 6
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 649
Length of database: 101054579
Length adjustment: 109
Effective length of query: 540
Effective length of database: 70169538
Effective search space: 7508140566
Effective search space used: 7508140566
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 65 (29.6 bits)