RID=1168927534-20577-110518237522.BLASTQ1, Contig47

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168927534-20577-110518237522.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig47
Length=274

Distribution of 16 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|15234320|ref|NP_192089.1|  ATP binding [Arabidopsis thaliana]    109    3e-24 
gi|17369638|sp|Q9SYI0|SECA_ARATH  Preprotein translocase secA ...   109    3e-24
gi|92894397|gb|ABE92213.1|  SecA protein [Medicago truncatula]      108    6e-24
gi|2500724|sp|Q41062|SECA_PEA  Preprotein translocase secA sub...   107    1e-23
gi|115436264|ref|NP_001042890.1|  Os01g0321300 [Oryza sativa (...   105    4e-23 
gi|52075758|dbj|BAD44978.1|  putative SecA [Oryza sativa (japonic   105    4e-23
gi|2500725|sp|Q36795|SECA_SPIOL  Preprotein translocase secA s...  96.7    2e-20
gi|1361973|pir||A57386  preprotein translocase secA precursor - s  95.5    5e-20
gi|116057307|emb|CAL51734.1|  unnamed protein product [Ostreococc  83.2    3e-16
gi|5263315|gb|AAD41417.1|AC007727_6  Similar to gb|X82404 chlo...  42.0    6e-04
gi|115484559|ref|NP_001067423.1|  Os11g0195100 [Oryza sativa (...  37.4    0.016 
gi|108864090|gb|ABA91870.2|  preprotein translocase secA famil...  37.4    0.016
gi|62733946|gb|AAX96055.1|  preprotein translocase, SecA subun...  37.4    0.016
gi|116317880|emb|CAH65909.1|  H0207B04.10 [Oryza sativa (indica c  30.8    1.5  
gi|38344114|emb|CAE01721.2|  OSJNBb0050O03.11 [Oryza sativa (japo  30.8    1.5   
gi|53791509|dbj|BAD52631.1|  hypothetical protein [Oryza sativa (  28.1    9.7

Alignments

 

>gi|15234320|ref|NP_192089.1|  ATP binding [Arabidopsis thaliana]
Length=1022

 Score =  109 bits (272),  Expect = 3e-24
 Identities = 58/80 (72%), Positives = 63/80 (78%), Gaps = 8/80 (10%)
 Frame = +3

Query  3     AVGLRGYAQRDPLIEYKLEGYNLFLDMMAQIRRNVIYSIYQFQPVMVKKDQEKS------  164
             AVGLRGYAQRDPLIEYKLEGYNLFL+MMAQIRRNVIYSIYQFQPV VKKD+EK       
Sbjct  937   AVGLRGYAQRDPLIEYKLEGYNLFLEMMAQIRRNVIYSIYQFQPVRVKKDEEKKSQNGKP  996

Query  165   DKVVTNGSSNQRPKPVGAVE  224
              K V N S  ++PK VG  +
Sbjct  997   SKQVDNAS--EKPKQVGVTD  1014


>gi|17369638|sp|Q9SYI0|SECA_ARATH  Preprotein translocase secA subunit, chloroplast precursor
 gi|4558549|gb|AAD22642.1|AC007138_6  putative SecA-type chloroplast protein transport factor [Arabidopsis 
thaliana]
 gi|7268223|emb|CAB77750.1|  putative SecA-type chloroplast protein transport factor [Arabidopsis 
thaliana]
Length=1021

 Score =  109 bits (272),  Expect = 3e-24
 Identities = 58/80 (72%), Positives = 63/80 (78%), Gaps = 8/80 (10%)
 Frame = +3

Query  3     AVGLRGYAQRDPLIEYKLEGYNLFLDMMAQIRRNVIYSIYQFQPVMVKKDQEKS------  164
             AVGLRGYAQRDPLIEYKLEGYNLFL+MMAQIRRNVIYSIYQFQPV VKKD+EK       
Sbjct  936   AVGLRGYAQRDPLIEYKLEGYNLFLEMMAQIRRNVIYSIYQFQPVRVKKDEEKKSQNGKP  995

Query  165   DKVVTNGSSNQRPKPVGAVE  224
              K V N S  ++PK VG  +
Sbjct  996   SKQVDNAS--EKPKQVGVTD  1013


>gi|92894397|gb|ABE92213.1|  SecA protein [Medicago truncatula]
Length=973

 Score =  108 bits (270),  Expect = 6e-24
 Identities = 56/80 (70%), Positives = 65/80 (81%), Gaps = 7/80 (8%)
 Frame = +3

Query  3    AVGLRGYAQRDPLIEYKLEGYNLFLDMMAQIRRNVIYSIYQFQPVMVKKDQEKSDKVVTN  182
            AVGLRGYAQRDPLIEYKLEGYNLFL+MMAQIRRNVIYSIYQF+PV++K+DQ+K++    +
Sbjct  888  AVGLRGYAQRDPLIEYKLEGYNLFLEMMAQIRRNVIYSIYQFKPVLLKQDQDKAEN-QKS  946

Query  183  GSSNQR------PKPVGAVE  224
            G  N R      P PVG VE
Sbjct  947  GKRNARTRNDTNPDPVGTVE  966


>gi|2500724|sp|Q41062|SECA_PEA  Preprotein translocase secA subunit, chloroplast precursor
 gi|1122325|emb|CAA57798.1|  chloroplast SecA protein [Pisum sativum]
Length=1011

 Score =  107 bits (268),  Expect = 1e-23
 Identities = 56/80 (70%), Positives = 64/80 (80%), Gaps = 7/80 (8%)
 Frame = +3

Query  3     AVGLRGYAQRDPLIEYKLEGYNLFLDMMAQIRRNVIYSIYQFQPVMVKKDQEKSDKVVTN  182
             AVGLRGYAQRDPLIEYKLEGYNLFL+MMAQIRRNVIYSIYQF+PV++K+DQ+K +    +
Sbjct  926   AVGLRGYAQRDPLIEYKLEGYNLFLEMMAQIRRNVIYSIYQFKPVLLKQDQDKMEN-QKS  984

Query  183   GSSNQR------PKPVGAVE  224
             G  N R      P PVG VE
Sbjct  985   GKRNARPPTDTNPDPVGTVE  1004


>gi|115436264|ref|NP_001042890.1|  Os01g0321300 [Oryza sativa (japonica cultivar-group)]
 gi|113532421|dbj|BAF04804.1|  Os01g0321300 [Oryza sativa (japonica cultivar-group)]
Length=1084

 Score =  105 bits (263),  Expect = 4e-23
 Identities = 51/74 (68%), Positives = 61/74 (82%), Gaps = 0/74 (0%)
 Frame = +3

Query  3     AVGLRGYAQRDPLIEYKLEGYNLFLDMMAQIRRNVIYSIYQFQPVMVKKDQEKSDKVVTN  182
             AVGLRGYAQRDPLIEYKLEGYNLFLDMMAQIRRNVIYS+YQF+PVM  +++EKS+K  T 
Sbjct  1008  AVGLRGYAQRDPLIEYKLEGYNLFLDMMAQIRRNVIYSVYQFKPVMKNQEEEKSEKKGTK  1067

Query  183   GSSNQRPKPVGAVE  224
                ++    +GA +
Sbjct  1068  KKVDKGANKLGAAQ  1081


>gi|52075758|dbj|BAD44978.1|  putative SecA [Oryza sativa (japonica cultivar-group)]
Length=1021

 Score =  105 bits (263),  Expect = 4e-23
 Identities = 51/74 (68%), Positives = 61/74 (82%), Gaps = 0/74 (0%)
 Frame = +3

Query  3     AVGLRGYAQRDPLIEYKLEGYNLFLDMMAQIRRNVIYSIYQFQPVMVKKDQEKSDKVVTN  182
             AVGLRGYAQRDPLIEYKLEGYNLFLDMMAQIRRNVIYS+YQF+PVM  +++EKS+K  T 
Sbjct  945   AVGLRGYAQRDPLIEYKLEGYNLFLDMMAQIRRNVIYSVYQFKPVMKNQEEEKSEKKGTK  1004

Query  183   GSSNQRPKPVGAVE  224
                ++    +GA +
Sbjct  1005  KKVDKGANKLGAAQ  1018


>gi|2500725|sp|Q36795|SECA_SPIOL  Preprotein translocase secA subunit, chloroplast precursor
 gi|939976|emb|CAA88933.1|  SecA [Spinacia oleracea]
Length=1036

 Score = 96.7 bits (239),  Expect = 2e-20
 Identities = 48/67 (71%), Positives = 58/67 (86%), Gaps = 1/67 (1%)
 Frame = +3

Query  3     AVGLRGYAQRDPLIEYKLEGYNLFLDMMAQIRRNVIYSIYQFQPVMVK-KDQEKSDKVVT  179
             AVGLRGYAQRDPLIEYKLEGYNLFL+MMAQIRRNVIYS YQF+PV+VK ++Q++  K  +
Sbjct  947   AVGLRGYAQRDPLIEYKLEGYNLFLEMMAQIRRNVIYSAYQFKPVVVKNQEQQQKGKPDS  1006

Query  180   NGSSNQR  200
             +   N+R
Sbjct  1007  SNVENKR  1013


>gi|1361973|pir||A57386  preprotein translocase secA precursor - spinach
Length=1036

 Score = 95.5 bits (236),  Expect = 5e-20
 Identities = 47/67 (70%), Positives = 58/67 (86%), Gaps = 1/67 (1%)
 Frame = +3

Query  3     AVGLRGYAQRDPLIEYKLEGYNLFLDMMAQIRRNVIYSIYQFQPVMVK-KDQEKSDKVVT  179
             AVGLRGYAQRDPLIEYKLEGYNLFL+MMAQIRRNVIYS YQF+PV+V+ ++Q++  K  +
Sbjct  947   AVGLRGYAQRDPLIEYKLEGYNLFLEMMAQIRRNVIYSAYQFKPVVVRNQEQQQKGKPDS  1006

Query  180   NGSSNQR  200
             +   N+R
Sbjct  1007  SNVENKR  1013


>gi|116057307|emb|CAL51734.1|  unnamed protein product [Ostreococcus tauri]
Length=737

 Score = 83.2 bits (204),  Expect = 3e-16
 Identities = 43/74 (58%), Positives = 53/74 (71%), Gaps = 6/74 (8%)
 Frame = +3

Query  3    AVGLRGYAQRDPLIEYKLEGYNLFLDMMAQIRRNVIYSIYQFQPVMV------KKDQEKS  164
            AVGLRGYAQ+DPLIEYKLEG+NL+ +MMAQIRRNVIYS+Y FQP  +       ++ E S
Sbjct  663  AVGLRGYAQKDPLIEYKLEGFNLYTEMMAQIRRNVIYSVYMFQPQRLDGKGSGAEEAEDS  722

Query  165  DKVVTNGSSNQRPK  206
            D V    +S +  K
Sbjct  723  DLVGAGKNSRKSNK  736


>gi|5263315|gb|AAD41417.1|AC007727_6  Similar to gb|X82404 chloroplast SecA protein from Pisum sativum. 
[Arabidopsis thaliana]
Length=977

 Score = 42.0 bits (97),  Expect = 6e-04
 Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 0/42 (0%)
 Frame = +3

Query  3    AVGLRGYAQRDPLIEYKLEGYNLFLDMMAQIRRNVIYSIYQF  128
            AV +R +A R+PL EYK++G   F+ M++  RR  + SI Q+
Sbjct  923  AVNVRSFAHRNPLEEYKIDGCRFFISMLSATRRLTVESILQY  964


>gi|115484559|ref|NP_001067423.1|  Os11g0195100 [Oryza sativa (japonica cultivar-group)]
 gi|113644645|dbj|BAF27786.1|  Os11g0195100 [Oryza sativa (japonica cultivar-group)]
Length=1112

 Score = 37.4 bits (85),  Expect = 0.016
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 0/42 (0%)
 Frame = +3

Query  3     AVGLRGYAQRDPLIEYKLEGYNLFLDMMAQIRRNVIYSIYQF  128
             AV +R +  R+PL EYK++G   F+ M+   RR  + S+  +
Sbjct  1055  AVNVRSFGHRNPLEEYKIDGCRFFISMLGATRRLTVESLLHY  1096


>gi|108864090|gb|ABA91870.2|  preprotein translocase secA family protein, putative, expressed 
[Oryza sativa (japonica cultivar-group)]
Length=1096

 Score = 37.4 bits (85),  Expect = 0.016
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 0/42 (0%)
 Frame = +3

Query  3     AVGLRGYAQRDPLIEYKLEGYNLFLDMMAQIRRNVIYSIYQF  128
             AV +R +  R+PL EYK++G   F+ M+   RR  + S+  +
Sbjct  1039  AVNVRSFGHRNPLEEYKIDGCRFFISMLGATRRLTVESLLHY  1080


>gi|62733946|gb|AAX96055.1|  preprotein translocase, SecA subunit [Oryza sativa (japonica 
cultivar-group)]
Length=1081

 Score = 37.4 bits (85),  Expect = 0.016
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 0/42 (0%)
 Frame = +3

Query  3     AVGLRGYAQRDPLIEYKLEGYNLFLDMMAQIRRNVIYSIYQF  128
             AV +R +  R+PL EYK++G   F+ M+   RR  + S+  +
Sbjct  1024  AVNVRSFGHRNPLEEYKIDGCRFFISMLGATRRLTVESLLHY  1065


>gi|116317880|emb|CAH65909.1|  H0207B04.10 [Oryza sativa (indica cultivar-group)]
Length=1409

 Score = 30.8 bits (68),  Expect = 1.5
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = -2

Query  252  LGGSQLTKMTQLHQLV*VSDYYYHL*QLYPTSPDPSLPSLVGTDILNILHFV  97
            LGG  + K  +L +L+   D +YHL   Y T   P + S++ +  LN+ HF+
Sbjct  311  LGGEAIGKHPKLLRLI-QDDLFYHLIH-YATETSPLVLSMICSTALNLYHFL  360


>gi|38344114|emb|CAE01721.2|  OSJNBb0050O03.11 [Oryza sativa (japonica cultivar-group)]
Length=1407

 Score = 30.8 bits (68),  Expect = 1.5
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = -2

Query  252  LGGSQLTKMTQLHQLV*VSDYYYHL*QLYPTSPDPSLPSLVGTDILNILHFV  97
            LGG  + K  +L +L+   D +YHL   Y T   P + S++ +  LN+ HF+
Sbjct  311  LGGEAIGKHPKLLRLI-QDDLFYHLIH-YATESSPLVLSMICSTALNLYHFL  360


>gi|53791509|dbj|BAD52631.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length=371

 Score = 28.1 bits (61),  Expect = 9.7
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -2

Query  156  PDPSLPSLVGTDILNILHFVL-SVPSYP  76
            P   LP+ +  D++ I HFVL S+PS+P
Sbjct  272  PSLDLPAELAADLVTISHFVLQSLPSFP  299

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 182
Number of extensions: 4
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 274
Length of database: 101054579
Length adjustment: 61
Effective length of query: 213
Effective length of database: 83770290
Effective search space: 2513108700
Effective search space used: 2513108700
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 61 (28.1 bits)