Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168928286-17702-214361053352.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig73 Length=589
Score E Sequences producing significant alignments: (Bits) Value gi|115476576|ref|NP_001061884.1| Os08g0435900 [Oryza sativa (... 300 3e-81 gi|33438474|emb|CAE30280.1| chlorophyll a /b binding protein [Be 296 4e-80 gi|100801744|emb|CAK24966.1| chlorophyll a/b binding protein [So 293 3e-79 gi|9624495|gb|AAF90200.1|AF287276_2 chlorophyll a/b-binding prot 290 3e-78 gi|30692874|ref|NP_190331.3| CAB4; chlorophyll binding [Arabi... 290 3e-78 gi|575349|emb|CAA57877.1| light-harvesting chlorophyll a /b b... 289 6e-78 gi|72580631|gb|AAR19267.2| chlorophyll a/b binding protein pr... 289 6e-78 gi|3789952|gb|AAC67557.1| chlorophyll a/b-binding protein presur 288 8e-78 gi|22753|emb|CAA78932.1| Lhca4 protein,Type 4 protein of ligh... 287 2e-77 gi|829287|emb|CAA78901.1| Lhca4 protein,Type 4 protein of lig... 287 2e-77 gi|6470348|gb|AAF13731.1| PSI light-harvesting antenna chloro... 283 3e-76 gi|20218813|emb|CAC84491.1| putative chlorophyll a/b-binding ... 279 5e-75 gi|11762172|gb|AAG40364.1|AF325012_1 AT3g47470 [Arabidopsis thal 271 1e-72 gi|544702|gb|AAB29486.1| light-harvesting complex I; LHC I [Hord 237 2e-62 gi|18539449|gb|AAL74395.1|AF359127_1 LHC I type IV chlorophyl... 213 5e-55 gi|37927438|gb|AAP69815.1| chlorophyll a/b-binding protein [Viti 179 5e-45 gi|115766|sp|P13869|CB12_PETHY Chlorophyll a-b binding protei... 170 3e-42 gi|602359|emb|CAA57492.1| Type II chlorophyll a/b binding pro... 169 7e-42 gi|115765|sp|P10708|CB12_LYCES Chlorophyll a-b binding protei... 169 9e-42 gi|666054|emb|CAA59049.1| LHCI-680, photosystem I antenna pro... 165 1e-40 gi|15233120|ref|NP_191706.1| LHCA2; chlorophyll binding [Arab... 163 4e-40 gi|4741940|gb|AAD28767.1|AF134120_1 Lhca2 protein [Arabidopsi... 163 4e-40 gi|115472983|ref|NP_001060090.1| Os07g0577600 [Oryza sativa (... 163 5e-40 gi|551047|emb|CAA55864.1| type II LHCI [Lolium temulentum] 162 1e-39 gi|63029283|gb|AAY27540.1| chloroplast light-harvesting compl... 159 5e-39 gi|20792|emb|CAA41406.1| Type II chlorophyll a /b-binding protei 159 5e-39 gi|40714517|dbj|BAD06922.1| light-harvesting chlorophyll-a/b ... 159 7e-39 gi|18376587|emb|CAC81065.1| putative chlorophyll A-B binding ... 158 1e-38 gi|63029293|gb|AAY27545.1| chloroplast light-harvesting compl... 153 5e-37 gi|40714509|dbj|BAD06918.1| light-harvesting chlorophyll-a/b ... 151 2e-36 gi|732534|gb|AAB40979.1| light harvesting complex a 149 6e-36 gi|2306981|gb|AAB65793.1| photosystem I antenna protein [Oryza s 149 6e-36 gi|40714515|dbj|BAD06921.1| light-harvesting chlorophyll-a/b ... 143 4e-34 gi|15220077|ref|NP_175137.1| LHCA5 [Arabidopsis thaliana] >gi... 143 5e-34 gi|21593722|gb|AAM65689.1| light-harvesting complex protein [Ara 142 9e-34 gi|5902596|gb|AAD55568.1|AF110786_1 light harvesting complex ... 142 9e-34 gi|541565|gb|AAA57542.1| PSI type II chlorophyll a/b-binding pro 141 2e-33 gi|4741942|gb|AAD28768.1|AF134121_1 Lhca5 protein [Arabidopsis t 141 2e-33 gi|27754356|gb|AAO22627.1| putative light-harvesting chloroph... 140 3e-33 gi|15221956|ref|NP_173349.1| LHCA2*1; chlorophyll binding [Ar... 140 3e-33 gi|8954053|gb|AAF82226.1|AC069143_2 Contains similarity to a ... 140 3e-33 gi|115479363|ref|NP_001063275.1| Os09g0439500 [Oryza sativa (... 139 7e-33 gi|115448873|ref|NP_001048216.1| Os02g0764500 [Oryza sativa (... 135 1e-31 gi|40714513|dbj|BAD06920.1| light-harvesting chlorophyll-a/b ... 133 5e-31 gi|95116528|gb|ABF56176.1| CAB11 [Theobroma cacao] 129 8e-30 gi|27542569|gb|AAO16495.1| light-harvesting complex I protein [C 124 2e-28 gi|40714521|dbj|BAD06924.1| light-harvesting chlorophyll-a/b ... 124 2e-28 gi|74272669|gb|ABA01130.1| chloroplast light harvesting compl... 124 3e-28 gi|116519125|gb|ABJ99591.1| type III chlorophyll a/b-binding pro 121 2e-27 gi|116519121|gb|ABJ99590.1| type III chlorophyll a/b-binding pro 121 2e-27 gi|20794|emb|CAA41407.1| Type III chlorophyll a /b-binding prote 119 1e-26 gi|115444841|ref|NP_001046200.1| Os02g0197600 [Oryza sativa (... 118 2e-26 gi|7271947|gb|AAF44703.1|AF241525_1 chlorophyll a/b-binding prot 117 3e-26 gi|82080|pir||S04125 chlorophyll a/b-binding protein type III... 114 2e-25 gi|115813|sp|P27522|CB13_LYCES Chlorophyll a-b binding protei... 114 2e-25 gi|430947|gb|AAA18206.1| PSI type III chlorophyll a/b-binding pr 114 3e-25 gi|79320443|ref|NP_001031217.1| LHCA3*1 [Arabidopsis thaliana] 114 3e-25 gi|15219941|ref|NP_176347.1| LHCA3*1; chlorophyll binding [Ar... 114 3e-25 gi|40714511|dbj|BAD06919.1| light-harvesting chlorophyll-a/b ... 113 6e-25 gi|110736814|dbj|BAF00366.1| PSI type III chlorophyll a/b-bin... 111 2e-24 gi|21554335|gb|AAM63442.1| PSI type III chlorophyll a/b-bindi... 110 3e-24 gi|309673|gb|AAA84545.1| light harvesting protein 110 4e-24 gi|42407520|dbj|BAD10637.1| unknown protein [Oryza sativa (japon 105 2e-22 gi|62199619|gb|AAX76906.1| chloroplast Tidi [Dunaliella salina] 104 2e-22 gi|63029295|gb|AAY27546.1| chloroplast light-harvesting compl... 103 5e-22 gi|37780998|gb|AAP35043.1| chlorophyll a/b binding protein [Viti 102 1e-21 gi|2326947|emb|CAA90681.1| Chlorophyll a/b-binding protein CP29 102 1e-21 gi|311994|emb|CAA50763.1| light harvesting complex I chloroph... 102 1e-21 gi|18539429|gb|AAL74385.1|AF359117_1 LHC I type II chlorophyl... 101 2e-21 gi|115472753|ref|NP_001059975.1| Os07g0558400 [Oryza sativa (... 100 4e-21 gi|493723|emb|CAA45523.1| photosystem I light-harvesting chlo... 99.8 7e-21 gi|13265501|gb|AAG40043.2|AF324692_1 AT3g54890 [Arabidopsis thal 99.4 9e-21 gi|115467828|ref|NP_001057513.1| Os06g0320500 [Oryza sativa (... 99.4 9e-21 gi|15233115|ref|NP_191049.1| LHCA1; chlorophyll binding [Arab... 99.4 9e-21 gi|7271945|gb|AAF44702.1|AF241524_1 chlorophyll a/b-binding prot 99.0 1e-20 gi|22750|emb|CAA78900.1| Lhcb5 protein [Pinus sylvestris] >gi... 98.2 2e-20 gi|4689382|gb|AAD27878.1|AF139466_1 chlorophyll a/b binding prot 97.4 3e-20 gi|20790|emb|CAA41405.1| Type 1 chlorophyll a /b-binding protein 97.1 4e-20 gi|20788|emb|CAA41404.1| Type 1 chlorophyll a /b-binding protein 97.1 4e-20 gi|110377793|gb|ABG73417.1| chloroplast pigment-binding protein 96.7 6e-20 gi|170388|gb|AAA34140.1| chlorophyll a/b-binding protein >gi|... 96.3 7e-20 gi|18958|emb|CAA44777.1| Precursor of CP29, core chlorophyll ... 95.9 9e-20 gi|445116|prf||1908421A light-harvesting complex IIa protein; 95.9 9e-20 gi|544700|gb|AAB29485.1| light-harvesting complex I; LHC I [Hord 95.1 2e-19 gi|6685157|gb|AAF23819.1|AF218305_2 chlorophyll a/b binding prot 95.1 2e-19 gi|110377766|gb|ABG73415.1| chloroplast pigment-binding protein 94.4 3e-19 gi|92871882|gb|ABE80774.1| Chlorophyll A-B binding protein [Medi 94.4 3e-19 gi|19184|emb|CAA43590.1| Type I (26 kD) CP29 polypeptide [Solanu 94.4 3e-19 gi|21593520|gb|AAM65487.1| chlorophyll a/b-binding protein-like 94.0 4e-19 gi|15235029|ref|NP_192772.1| LHCB5 (LIGHT HARVESTING COMPLEX ... 94.0 4e-19 gi|115764|sp|P12360|CB11_LYCES Chlorophyll a-b binding protei... 94.0 4e-19 gi|13877547|gb|AAK43851.1|AF370474_1 chlorophyll a/b-binding ... 93.6 5e-19 gi|108864186|gb|ABG22426.1| Chlorophyll A-B binding protein, ... 93.2 6e-19 gi|20260162|gb|AAM12979.1| chlorophyll a/b-binding protein CP29 93.2 6e-19 gi|115484899|ref|NP_001067593.1| Os11g0242800 [Oryza sativa (... 93.2 6e-19 gi|15241005|ref|NP_195773.1| chlorophyll binding [Arabidopsis... 93.2 6e-19 gi|4741948|gb|AAD28771.1|AF134124_1 Lhcb2 protein [Arabidopsis t 92.8 8e-19 gi|30686051|ref|NP_850231.1| LHB1B2 [Arabidopsis thaliana] 92.8 8e-19 gi|15224471|ref|NP_178585.1| LHCB2.1; chlorophyll binding [Ar... 92.8 8e-19 gi|15224465|ref|NP_178582.1| LHCB2.2; chlorophyll binding [Ar... 92.8 8e-19
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 435 Number of extensions: 5 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 589 Length of database: 101054579 Length adjustment: 107 Effective length of query: 482 Effective length of database: 70736236 Effective search space: 6295525004 Effective search space used: 6295525004 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 64 (29.3 bits)