RID=1168928331-19732-188541290473.BLASTQ4, Contig75

Alignments
 

>gi|87240837|gb|ABD32695.1|  RNA-binding region RNP-1 (RNA recognition motif); Calcium-binding 
EF-hand [Medicago truncatula]
 gi|92897076|gb|ABE93532.1|  RNA-binding region RNP-1 (RNA recognition motif); Calcium-binding 
EF-hand [Medicago truncatula]
Length=479

 Score =  231 bits (590),  Expect = 6e-61
 Identities = 113/149 (75%), Positives = 129/149 (86%), Gaps = 3/149 (2%)
 Frame = -2

Query  440  SAASQVKALYVKNIPDNTSTEKLKEVFQRHGEVIKVVMPPGKA-GKRDFGFIHYAERSSA  264
            +AASQVKALYVKNIP+N +TE+LKE+F+RHGEV KVVMPPGKA GKRDFGFIHYAERSSA
Sbjct  274  AAASQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGKRDFGFIHYAERSSA  333

Query  263  LKAVKDTEKYEIDGQVLEVVLAKPQTDKKTDAAYPYSAGLHPNQLSHPGYGGFTGAPYAS  84
            LKAVK+TEKYEIDGQ LEVV+AKPQ +KK D  Y Y+ GLHPN L HPGYG F+G  Y S
Sbjct  334  LKAVKETEKYEIDGQALEVVIAKPQAEKKPDGGYAYNPGLHPNHLPHPGYGNFSGNLYGS  393

Query  83   VSAGFGV--ATSFQQPVIYGRGPMPSGMQ  3
            V AG+GV  A ++QQP+IYGRGPMP+GMQ
Sbjct  394  VGAGYGVAAAAAYQQPMIYGRGPMPAGMQ  422


>gi|18411454|ref|NP_567192.1|  RNA binding / nucleic acid binding [Arabidopsis thaliana]
 gi|79324963|ref|NP_001031566.1|  RNA binding / nucleic acid binding [Arabidopsis thaliana]
 gi|13605916|gb|AAK32943.1|AF367357_1  AT4g00830/A_TM018A10_14 [Arabidopsis thaliana]
 gi|21360555|gb|AAM47474.1|  AT4g00830/A_TM018A10_14 [Arabidopsis thaliana]
 gi|110743368|dbj|BAE99571.1|  hypothetical protein [Arabidopsis thaliana]
Length=495

 Score =  214 bits (545),  Expect = 1e-55
 Identities = 104/150 (69%), Positives = 124/150 (82%), Gaps = 2/150 (1%)
 Frame = -2

Query  446  DHSAAS-QVKALYVKNIPDNTSTEKLKEVFQRHGEVIKVVMPPGKAGKRDFGFIHYAERS  270
            +HSAA+ QVKALYVKNIP+NTSTE+LKE+FQRHGEV K+V PPGK GKRDFGF+HYAERS
Sbjct  283  EHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERS  342

Query  269  SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTD-AAYPYSAGLHPNQLSHPGYGGFTGAP  93
            SALKAVKDTE+YE++GQ LEVVLAKPQ ++K D ++Y Y A   P    HP +GGF  AP
Sbjct  343  SALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPSSYSYGAAPTPAPFVHPTFGGFAAAP  402

Query  92   YASVSAGFGVATSFQQPVIYGRGPMPSGMQ  3
            Y ++ AG G+A SF QP+IYGRG MP+GMQ
Sbjct  403  YGAMGAGLGIAGSFSQPMIYGRGAMPTGMQ  432


>gi|2252863|gb|AAB62861.1|  similar to nucleolin protein [Arabidopsis thaliana]
 gi|7267422|emb|CAB80892.1|  putative protein [Arabidopsis thaliana]
Length=521

 Score =  214 bits (545),  Expect = 1e-55
 Identities = 104/150 (69%), Positives = 124/150 (82%), Gaps = 2/150 (1%)
 Frame = -2

Query  446  DHSAAS-QVKALYVKNIPDNTSTEKLKEVFQRHGEVIKVVMPPGKAGKRDFGFIHYAERS  270
            +HSAA+ QVKALYVKNIP+NTSTE+LKE+FQRHGEV K+V PPGK GKRDFGF+HYAERS
Sbjct  309  EHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERS  368

Query  269  SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTD-AAYPYSAGLHPNQLSHPGYGGFTGAP  93
            SALKAVKDTE+YE++GQ LEVVLAKPQ ++K D ++Y Y A   P    HP +GGF  AP
Sbjct  369  SALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPSSYSYGAAPTPAPFVHPTFGGFAAAP  428

Query  92   YASVSAGFGVATSFQQPVIYGRGPMPSGMQ  3
            Y ++ AG G+A SF QP+IYGRG MP+GMQ
Sbjct  429  YGAMGAGLGIAGSFSQPMIYGRGAMPTGMQ  458


>gi|115481176|ref|NP_001064181.1|  Os10g0151800 [Oryza sativa (japonica cultivar-group)]
 gi|18425248|gb|AAL69426.1|AC098565_8  Putative RNA-binding protein [Oryza sativa]
 gi|31430199|gb|AAP52145.1|  RNA recognition motif family protein, expressed [Oryza sativa 
(japonica cultivar-group)]
 gi|113638790|dbj|BAF26095.1|  Os10g0151800 [Oryza sativa (japonica cultivar-group)]
Length=472

 Score =  173 bits (439),  Expect = 2e-43
 Identities = 90/147 (61%), Positives = 109/147 (74%), Gaps = 7/147 (4%)
 Frame = -2

Query  440  SAASQVKALYVKNIPDNTSTEKLKEVFQRHGEVIKVVMPPGKAG-KRDFGFIHYAERSSA  264
            SAA+QVK +YVKN+P+N S EK+KE+F+ HGEV KVV+PP KAG KRDFGF+H+AERSSA
Sbjct  281  SAAAQVKTIYVKNLPENASKEKIKEIFEIHGEVTKVVLPPAKAGNKRDFGFVHFAERSSA  340

Query  263  LKAVKDTEKYEIDGQVLEVVLAKPQTDKKTDAAYPYSAGLHPNQLSHPGYGGFTGAPYAS  84
            LKAVK +EKYEIDGQVLEV +AKP  DKK D  + +  G  PN    P YGG+ G PY +
Sbjct  341  LKAVKGSEKYEIDGQVLEVSMAKPLGDKKPD--HSFKPGGAPN-FPLPPYGGYMGDPYGA  397

Query  83   VSAGFGVATSFQQPVIYGRGPMPSGMQ  3
               G      F QP+IYGRGP P+GM+
Sbjct  398  YGGG---GPGFNQPMIYGRGPAPAGMR  421


>gi|62733051|gb|AAX95168.1|  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), putative 
[Oryza sativa (japonica cultivar-group)]
 gi|77549578|gb|ABA92375.1|  RNA recognition motif family protein, expressed [Oryza sativa 
(japonica cultivar-group)]
Length=465

 Score =  168 bits (425),  Expect = 8e-42
 Identities = 86/147 (58%), Positives = 108/147 (73%), Gaps = 7/147 (4%)
 Frame = -2

Query  440  SAASQVKALYVKNIPDNTSTEKLKEVFQRHGEVIKVVMPPGKAG-KRDFGFIHYAERSSA  264
            SAA+QVK +YVKN+P+N S EK+KE+F++HGEV KVV+PP K G KRDFGF+H+AERSSA
Sbjct  274  SAAAQVKTIYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKDGHKRDFGFVHFAERSSA  333

Query  263  LKAVKDTEKYEIDGQVLEVVLAKPQTDKKTDAAYPYSAGLHPNQLSHPGYGGFTGAPYAS  84
            LKAVK +EKYE +GQVLEV +AKP  DKK D ++  +    PN    P YGG+ G PY +
Sbjct  334  LKAVKGSEKYEFNGQVLEVSMAKPLGDKKPDHSFKPAGA--PN-FPLPPYGGYMGDPYGA  390

Query  83   VSAGFGVATSFQQPVIYGRGPMPSGMQ  3
               G      F QP+IYGRGP P+GM+
Sbjct  391  YGGG---GPGFNQPMIYGRGPAPAGMR  414


>gi|115484959|ref|NP_001067623.1|  Os11g0250000 [Oryza sativa (japonica cultivar-group)]
 gi|113644845|dbj|BAF27986.1|  Os11g0250000 [Oryza sativa (japonica cultivar-group)]
Length=500

 Score =  161 bits (407),  Expect = 1e-39
 Identities = 82/142 (57%), Positives = 103/142 (72%), Gaps = 7/142 (4%)
 Frame = -2

Query  425  VKALYVKNIPDNTSTEKLKEVFQRHGEVIKVVMPPGKAG-KRDFGFIHYAERSSALKAVK  249
            VK +YVKN+P+N S EK+KE+F++HGEV KVV+PP K G KRDFGF+H+AERSSALKAVK
Sbjct  314  VKTIYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKDGHKRDFGFVHFAERSSALKAVK  373

Query  248  DTEKYEIDGQVLEVVLAKPQTDKKTDAAYPYSAGLHPNQLSHPGYGGFTGAPYASVSAGF  69
             +EKYE +GQVLEV +AKP  DKK D ++  +    PN    P YGG+ G PY +   G 
Sbjct  374  GSEKYEFNGQVLEVSMAKPLGDKKPDHSFKPAGA--PN-FPLPPYGGYMGDPYGAYGGG-  429

Query  68   GVATSFQQPVIYGRGPMPSGMQ  3
                 F QP+IYGRGP P+GM+
Sbjct  430  --GPGFNQPMIYGRGPAPAGMR  449


>gi|78707789|gb|ABB46764.1|  RNA recognition motif family protein, expressed [Oryza sativa 
(japonica cultivar-group)]
 gi|78707790|gb|ABB46765.1|  RNA recognition motif family protein, expressed [Oryza sativa 
(japonica cultivar-group)]
Length=438

 Score =  152 bits (383),  Expect = 6e-37
 Identities = 84/145 (57%), Positives = 101/145 (69%), Gaps = 8/145 (5%)
 Frame = -2

Query  440  SAASQVKALYVKNIPDNTSTEKLKEVFQRHGEVIKVVMPPGKAG-KRDFGFIHYAERSSA  264
            SAA+QVK +YVKN+P+N S EK+KE+F+ HGEV KVV+PP KAG KRDFGF+H+AERSSA
Sbjct  281  SAAAQVKTIYVKNLPENASKEKIKEIFEIHGEVTKVVLPPAKAGNKRDFGFVHFAERSSA  340

Query  263  LKAVKDTEKYEIDGQVLEVVLAKPQTDKKTDAAYPYSAGLHPNQLSHPGYGGFTGAPYAS  84
            LKAVK +EKYEIDGQVLEV +AKP  DKK D  + +  G  PN    P YGG+ G PY +
Sbjct  341  LKAVKGSEKYEIDGQVLEVSMAKPLGDKKPD--HSFKPGGAPN-FPLPPYGGYMGDPYGA  397

Query  83   VSA---GFGVATSFQQPVIYGR-GP  21
                  GF      +    YGR GP
Sbjct  398  YGGGGPGFNQVNQTKPSGAYGRVGP  422


>gi|87241499|gb|ABD33357.1|  RNA-binding region RNP-1 (RNA recognition motif) [Medicago truncatula]
Length=703

 Score =  139 bits (351),  Expect = 3e-33
 Identities = 73/149 (48%), Positives = 97/149 (65%), Gaps = 4/149 (2%)
 Frame = -2

Query  446  DHSAASQVKALYVKNIPDNTSTEKLKEVFQRHGEVIKVVMPPGKAG--KRDFGFIHYAER  273
            D SA+SQVK +YVKN+P N + E+LK++F+ HG++ KVV+PP K G  K   GF+H+AER
Sbjct  513  DSSASSQVKEVYVKNLPKNVTKEQLKKLFEHHGKITKVVLPPPKPGQEKNRIGFVHFAER  572

Query  272  SSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTDAAYPYSAGLHPNQLSHPGYGGFTGAP  93
            S+A+KA+K+TEKY +DGQ+LE  LAK Q D K   +   + G  P    H GY G  G P
Sbjct  573  SNAMKALKNTEKYVLDGQILECSLAKQQADPKAVVSNIQTQGSLPRYPPHVGY-GLDGNP  631

Query  92   YASVSAGFGVATSFQQPVIYGRGPMPSGM  6
            Y  + AG+G A    QP  YG G  P G+
Sbjct  632  YGVLGAGYG-APGLAQPFTYGLGQTPGGI  659


 Score = 38.5 bits (88),  Expect = 0.009
 Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = -2

Query  416  LYVKNIPDNTSTEKLKEVFQRHGEVIKVVMPPGK--AGKRDFGFIHYAERSSALKAVKDT  243
            +YV  IP +  TE LKE  +  GEV++V +  GK  +  R F F+ Y     A KA+K+ 
Sbjct  349  VYVGGIPLDAKTEDLKEFCECIGEVVQVRIFKGKDASENRGFAFVTYRSIELASKAIKEL  408

Query  242  EKYE  231
               E
Sbjct  409  NNTE  412


>gi|15231284|ref|NP_190834.1|  RNA binding / nucleic acid binding [Arabidopsis thaliana]
 gi|79314840|ref|NP_001030849.1|  RNA binding / nucleic acid binding [Arabidopsis thaliana]
 gi|7669940|emb|CAB89227.1|  putative RNA binding protein [Arabidopsis thaliana]
 gi|51970792|dbj|BAD44088.1|  putative RNA-binding protein [Arabidopsis thaliana]
 gi|51971921|dbj|BAD44625.1|  putative RNA-binding protein [Arabidopsis thaliana]
 gi|115646718|gb|ABJ17093.1|  At3g52660 [Arabidopsis thaliana]
Length=471

 Score =  130 bits (326),  Expect = 2e-30
 Identities = 68/150 (45%), Positives = 103/150 (68%), Gaps = 8/150 (5%)
 Frame = -2

Query  440  SAASQVKALYVKNIPDNTSTEKLKEVFQRHGEVIKVVMPPGKAGKRD--FGFIHYAERSS  267
            S+ASQVKALY+KN+P + + E+LK +F+ HG+++KVV+PP K GK D  +GF+HYAER+S
Sbjct  262  SSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTS  321

Query  266  ALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTD---AAYPYSAGLHPNQLSHPGYGGFTGA  96
             ++A+K+TE+YEIDG +L+  LAKPQ D+KT+         + L PN      Y G   +
Sbjct  322  VMRALKNTERYEIDGHMLDCTLAKPQADQKTNTNTVQNVQKSQLQPNYPPLLSY-GMAPS  380

Query  95   PYASVSAGFGVATSFQQPVIYGRGPMPSGM  6
            P+ ++  GFG A+++ QP+++  G    GM
Sbjct  381  PFGAL-GGFG-ASAYSQPLMHAGGHAAGGM  408


>gi|115487230|ref|NP_001066102.1|  Os12g0136200 [Oryza sativa (japonica cultivar-group)]
 gi|113648609|dbj|BAF29121.1|  Os12g0136200 [Oryza sativa (japonica cultivar-group)]
Length=515

 Score =  110 bits (275),  Expect = 2e-24
 Identities = 65/153 (42%), Positives = 96/153 (62%), Gaps = 12/153 (7%)
 Frame = -2

Query  446  DHSAASQVKALYVKNIPDNTSTEKLKEVFQRHGEVIKVVMPPGKAGKRD-FGFIHYAERS  270
            D ++ SQVK++YVKN+P N +  +LK +F+ HGE+ KVV+PP + G  + +GF+H+ +RS
Sbjct  287  DSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFKDRS  346

Query  269  SALKAVKDTEKYEIDGQVLEVVLAK-PQTDKKTDAAYPYSAGLHPNQLSHP--GYGGFTG  99
             A++A+++TE+YE+DGQVL+  LAK P  DKK D     S+   P   S+P  GYG    
Sbjct  347  MAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPSYPPLGYG----  402

Query  98   APYASVSAGFGVA-TSFQQPVIYG-RGPMPSGM  6
                SV   +G A  S  QP++Y  R P  + M
Sbjct  403  --IMSVPGAYGAAPASTAQPMLYAPRAPPGAAM  433


 Score = 47.8 bits (112),  Expect = 2e-05
 Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 0/70 (0%)
 Frame = -2

Query  416  LYVKNIPDNTSTEKLKEVFQRHGEVIKVVMPPGKAGKRDFGFIHYAERSSALKAVKDTEK  237
            +YV  I  + S+E LK + +  GEV++V M  GK   R + F+++  +  ALKAVK+   
Sbjct  126  VYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKDDSRGYAFVNFRTKGLALKAVKELNN  185

Query  236  YEIDGQVLEV  207
             ++ G+ + V
Sbjct  186  AKLKGKRIRV  195


>gi|108862165|gb|ABA95754.2|  RNA recognition motif family protein, expressed [Oryza sativa 
(japonica cultivar-group)]
 gi|108862166|gb|ABG21876.1|  RNA recognition motif family protein, expressed [Oryza sativa 
(japonica cultivar-group)]
Length=502

 Score =  110 bits (275),  Expect = 2e-24
 Identities = 65/153 (42%), Positives = 96/153 (62%), Gaps = 12/153 (7%)
 Frame = -2

Query  446  DHSAASQVKALYVKNIPDNTSTEKLKEVFQRHGEVIKVVMPPGKAGKRD-FGFIHYAERS  270
            D ++ SQVK++YVKN+P N +  +LK +F+ HGE+ KVV+PP + G  + +GF+H+ +RS
Sbjct  274  DSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFKDRS  333

Query  269  SALKAVKDTEKYEIDGQVLEVVLAK-PQTDKKTDAAYPYSAGLHPNQLSHP--GYGGFTG  99
             A++A+++TE+YE+DGQVL+  LAK P  DKK D     S+   P   S+P  GYG    
Sbjct  334  MAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPSYPPLGYG----  389

Query  98   APYASVSAGFGVA-TSFQQPVIYG-RGPMPSGM  6
                SV   +G A  S  QP++Y  R P  + M
Sbjct  390  --IMSVPGAYGAAPASTAQPMLYAPRAPPGAAM  420


 Score = 47.8 bits (112),  Expect = 2e-05
 Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 0/70 (0%)
 Frame = -2

Query  416  LYVKNIPDNTSTEKLKEVFQRHGEVIKVVMPPGKAGKRDFGFIHYAERSSALKAVKDTEK  237
            +YV  I  + S+E LK + +  GEV++V M  GK   R + F+++  +  ALKAVK+   
Sbjct  113  VYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKDDSRGYAFVNFRTKGLALKAVKELNN  172

Query  236  YEIDGQVLEV  207
             ++ G+ + V
Sbjct  173  AKLKGKRIRV  182


>gi|29371361|gb|AAO72701.1|  putative RNA-binding protein [Oryza sativa (japonica cultivar-group)]
Length=476

 Score =  110 bits (275),  Expect = 2e-24
 Identities = 65/153 (42%), Positives = 96/153 (62%), Gaps = 12/153 (7%)
 Frame = -2

Query  446  DHSAASQVKALYVKNIPDNTSTEKLKEVFQRHGEVIKVVMPPGKAGKRD-FGFIHYAERS  270
            D ++ SQVK++YVKN+P N +  +LK +F+ HGE+ KVV+PP + G  + +GF+H+ +RS
Sbjct  286  DSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFKDRS  345

Query  269  SALKAVKDTEKYEIDGQVLEVVLAK-PQTDKKTDAAYPYSAGLHPNQLSHP--GYGGFTG  99
             A++A+++TE+YE+DGQVL+  LAK P  DKK D     S+   P   S+P  GYG    
Sbjct  346  MAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPSYPPLGYG----  401

Query  98   APYASVSAGFGVA-TSFQQPVIYG-RGPMPSGM  6
                SV   +G A  S  QP++Y  R P  + M
Sbjct  402  --IMSVPGAYGAAPASTAQPMLYAPRAPPGAAM  432


 Score = 47.8 bits (112),  Expect = 2e-05
 Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 0/70 (0%)
 Frame = -2

Query  416  LYVKNIPDNTSTEKLKEVFQRHGEVIKVVMPPGKAGKRDFGFIHYAERSSALKAVKDTEK  237
            +YV  I  + S+E LK + +  GEV++V M  GK   R + F+++  +  ALKAVK+   
Sbjct  125  VYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKDDSRGYAFVNFRTKGLALKAVKELNN  184

Query  236  YEIDGQVLEV  207
             ++ G+ + V
Sbjct  185  AKLKGKRIRV  194


>gi|115484087|ref|NP_001065705.1|  Os11g0139500 [Oryza sativa (japonica cultivar-group)]
 gi|113644409|dbj|BAF27550.1|  Os11g0139500 [Oryza sativa (japonica cultivar-group)]
Length=261

 Score =  109 bits (272),  Expect = 4e-24
 Identities = 65/153 (42%), Positives = 95/153 (62%), Gaps = 12/153 (7%)
 Frame = -2

Query  446  DHSAASQVKALYVKNIPDNTSTEKLKEVFQRHGEVIKVVMPPGKAGKRD-FGFIHYAERS  270
            D  + SQVK++YVKN+P N +  +LK +F+ HGE+ KVV+PP + G  + +GF+H+ +RS
Sbjct  33   DSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFKDRS  92

Query  269  SALKAVKDTEKYEIDGQVLEVVLAK-PQTDKKTDAAYPYSAGLHPNQLSHP--GYGGFTG  99
             A++A+++TE+YE+DGQVL+  LAK P  DKK D     S+   P   S+P  GYG    
Sbjct  93   MAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPSYPPLGYG----  148

Query  98   APYASVSAGFGVA-TSFQQPVIYG-RGPMPSGM  6
                SV   +G A  S  QP++Y  R P  + M
Sbjct  149  --IMSVPGAYGAAPASTAQPMLYAPRAPPGAAM  179


>gi|108863976|gb|ABG22354.1|  RNA recognition motif family protein, expressed [Oryza sativa 
(japonica cultivar-group)]
Length=252

 Score =  109 bits (272),  Expect = 4e-24
 Identities = 65/153 (42%), Positives = 95/153 (62%), Gaps = 12/153 (7%)
 Frame = -2

Query  446  DHSAASQVKALYVKNIPDNTSTEKLKEVFQRHGEVIKVVMPPGKAGKRD-FGFIHYAERS  270
            D  + SQVK++YVKN+P N +  +LK +F+ HGE+ KVV+PP + G  + +GF+H+ +RS
Sbjct  24   DSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFKDRS  83

Query  269  SALKAVKDTEKYEIDGQVLEVVLAK-PQTDKKTDAAYPYSAGLHPNQLSHP--GYGGFTG  99
             A++A+++TE+YE+DGQVL+  LAK P  DKK D     S+   P   S+P  GYG    
Sbjct  84   MAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPSYPPLGYG----  139

Query  98   APYASVSAGFGVA-TSFQQPVIYG-RGPMPSGM  6
                SV   +G A  S  QP++Y  R P  + M
Sbjct  140  --IMSVPGAYGAAPASTAQPMLYAPRAPPGAAM  170


>gi|108863977|gb|ABG22355.1|  RNA recognition motif family protein, expressed [Oryza sativa 
(japonica cultivar-group)]
Length=361

 Score =  109 bits (272),  Expect = 4e-24
 Identities = 65/153 (42%), Positives = 95/153 (62%), Gaps = 12/153 (7%)
 Frame = -2

Query  446  DHSAASQVKALYVKNIPDNTSTEKLKEVFQRHGEVIKVVMPPGKAGKRD-FGFIHYAERS  270
            D  + SQVK++YVKN+P N +  +LK +F+ HGE+ KVV+PP + G  + +GF+H+ +RS
Sbjct  133  DSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFKDRS  192

Query  269  SALKAVKDTEKYEIDGQVLEVVLAK-PQTDKKTDAAYPYSAGLHPNQLSHP--GYGGFTG  99
             A++A+++TE+YE+DGQVL+  LAK P  DKK D     S+   P   S+P  GYG    
Sbjct  193  MAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPSYPPLGYG----  248

Query  98   APYASVSAGFGVA-TSFQQPVIYG-RGPMPSGM  6
                SV   +G A  S  QP++Y  R P  + M
Sbjct  249  --IMSVPGAYGAAPASTAQPMLYAPRAPPGAAM  279


>gi|108863978|gb|ABA91387.2|  RNA recognition motif family protein, expressed [Oryza sativa 
(japonica cultivar-group)]
Length=501

 Score =  109 bits (272),  Expect = 4e-24
 Identities = 65/153 (42%), Positives = 95/153 (62%), Gaps = 12/153 (7%)
 Frame = -2

Query  446  DHSAASQVKALYVKNIPDNTSTEKLKEVFQRHGEVIKVVMPPGKAGKRD-FGFIHYAERS  270
            D  + SQVK++YVKN+P N +  +LK +F+ HGE+ KVV+PP + G  + +GF+H+ +RS
Sbjct  273  DSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFKDRS  332

Query  269  SALKAVKDTEKYEIDGQVLEVVLAK-PQTDKKTDAAYPYSAGLHPNQLSHP--GYGGFTG  99
             A++A+++TE+YE+DGQVL+  LAK P  DKK D     S+   P   S+P  GYG    
Sbjct  333  MAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPSYPPLGYG----  388

Query  98   APYASVSAGFGVA-TSFQQPVIYG-RGPMPSGM  6
                SV   +G A  S  QP++Y  R P  + M
Sbjct  389  --IMSVPGAYGAAPASTAQPMLYAPRAPPGAAM  419


 Score = 46.2 bits (108),  Expect = 5e-05
 Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 0/70 (0%)
 Frame = -2

Query  416  LYVKNIPDNTSTEKLKEVFQRHGEVIKVVMPPGKAGKRDFGFIHYAERSSALKAVKDTEK  237
            +YV  I  + S+E LK + +  GEV++V M  GK   R + F+++  +  ALK VK+   
Sbjct  112  VYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKDDSRGYAFVNFRTKGLALKVVKELNN  171

Query  236  YEIDGQVLEV  207
             ++ G+ + V
Sbjct  172  AKLKGKRIRV  181


>gi|22327128|ref|NP_198191.2|  RNA binding / nucleic acid binding [Arabidopsis thaliana]
Length=180

 Score = 98.6 bits (244),  Expect = 8e-21
 Identities = 43/74 (58%), Positives = 63/74 (85%), Gaps = 2/74 (2%)
 Frame = -2

Query  440  SAASQVKALYVKNIPDNTSTEKLKEVFQRHGEVIKVVMPPGKAGKRD--FGFIHYAERSS  267
            S+ASQVKALY+KN+P + + E+LK +F+ HG+++KVV+PP K GK D  +GF+HYAER+S
Sbjct  28   SSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTS  87

Query  266  ALKAVKDTEKYEID  225
             ++A+K+TE+YEID
Sbjct  88   VMRALKNTERYEID  101


>gi|9502153|gb|AAF88006.1|  contains similarity to Pfam family PF00076 (RNA recognition motif. 
(a.k.a. RRM, RBD, or RNP domain)), score=42.1, E=1.3e-08, 
N=1 [Arabidopsis thaliana]
Length=298

 Score = 94.4 bits (233),  Expect = 1e-19
 Identities = 40/72 (55%), Positives = 60/72 (83%), Gaps = 2/72 (2%)
 Frame = -2

Query  431  SQVKALYVKNIPDNTSTEKLKEVFQRHGEVIKVVMPPGKAGKRD--FGFIHYAERSSALK  258
            + VKALY+KN+P + + E+LK +F+ HG+++KVV+PP K GK D  +GF+HYAER+S ++
Sbjct  161  NHVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMR  220

Query  257  AVKDTEKYEIDG  222
            A+K+TE+YEIDG
Sbjct  221  ALKNTERYEIDG  232


>gi|23197794|gb|AAN15424.1|  Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis 
thaliana]
Length=379

 Score = 63.5 bits (153),  Expect = 3e-10
 Identities = 45/142 (31%), Positives = 68/142 (47%), Gaps = 6/142 (4%)
 Frame = -2

Query  431  SQVKALYVKNIPDNTSTEKLKEVFQRHGEVI--KVVMPPGKAGKRDFGFIHYAERSSALK  258
            SQ   LY+KN+ D+   EKLKE+F  +G V   KV++ P +   R FGF+ Y+    AL+
Sbjct  48   SQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNP-QGMSRGFGFVAYSNPEEALR  106

Query  257  AVKDTEKYEIDGQVLEVVLAKPQTDKKTDAAYPYSAGLHPNQLS---HPGYGGFTGAPYA  87
            A+ +     I  + L + LA+ + D++      +S    P  +S   HP  G   G P  
Sbjct  107  ALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQIRAPGPMSGFHHPPGGPMPGPPQH  166

Query  86   SVSAGFGVATSFQQPVIYGRGP  21
                  G +    QP+ YG  P
Sbjct  167  MYVGQNGASMVPSQPIGYGFQP  188


>gi|9930616|gb|AAG02117.1|AF293840_1  poly(A) binding protein [Arabidopsis thaliana]
Length=660

 Score = 63.5 bits (153),  Expect = 3e-10
 Identities = 45/142 (31%), Positives = 68/142 (47%), Gaps = 6/142 (4%)
 Frame = -2

Query  431  SQVKALYVKNIPDNTSTEKLKEVFQRHGEVI--KVVMPPGKAGKRDFGFIHYAERSSALK  258
            SQ   LY+KN+ D+   EKLKE+F  +G V   KV++ P +   R FGF+ Y+    AL+
Sbjct  329  SQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNP-QGMSRGFGFVAYSNPEEALR  387

Query  257  AVKDTEKYEIDGQVLEVVLAKPQTDKKTDAAYPYSAGLHPNQLS---HPGYGGFTGAPYA  87
            A+ +     I  + L + LA+ + D++      +S    P  +S   HP  G   G P  
Sbjct  388  ALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQIRAPGPMSGFHHPPGGPMPGPPQH  447

Query  86   SVSAGFGVATSFQQPVIYGRGP  21
                  G +    QP+ YG  P
Sbjct  448  MYVGQNGASMVPSQPIGYGFQP  469


 Score = 39.7 bits (91),  Expect = 0.004
 Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
 Frame = -2

Query  416  LYVKNIPDNTSTEKLKEVFQRHGEVIK-VVMPPGKAGKRDFGFIHYAERSSALKAVKDTE  240
            +YVKN+P     ++L++ F + G +   VVM       R FGF+++    +A  AV+   
Sbjct  231  VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN  290

Query  239  KYEIDGQVLEVVLAKPQTDKKTD  171
               +   VL V  A+ +++++ +
Sbjct  291  GISLGDDVLYVGRAQKKSEREEE  313


>gi|15219945|ref|NP_173690.1|  PAB3 (POLY(A) BINDING PROTEIN 3); RNA binding [Arabidopsis thaliana]
 gi|12643628|sp|O64380|PABP3_ARATH  Polyadenylate-binding protein 3 (Poly(A)-binding protein 3) (PABP 
3)
 gi|2505869|emb|CAA72907.1|  polyA binding protein PAB3 [Arabidopsis thaliana]
 gi|15450820|gb|AAK96681.1|  Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis 
thaliana]
Length=660

 Score = 63.5 bits (153),  Expect = 3e-10
 Identities = 45/142 (31%), Positives = 68/142 (47%), Gaps = 6/142 (4%)
 Frame = -2

Query  431  SQVKALYVKNIPDNTSTEKLKEVFQRHGEVI--KVVMPPGKAGKRDFGFIHYAERSSALK  258
            SQ   LY+KN+ D+   EKLKE+F  +G V   KV++ P +   R FGF+ Y+    AL+
Sbjct  329  SQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNP-QGMSRGFGFVAYSNPEEALR  387

Query  257  AVKDTEKYEIDGQVLEVVLAKPQTDKKTDAAYPYSAGLHPNQLS---HPGYGGFTGAPYA  87
            A+ +     I  + L + LA+ + D++      +S    P  +S   HP  G   G P  
Sbjct  388  ALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQIRAPGPMSGFHHPPGGPMPGPPQH  447

Query  86   SVSAGFGVATSFQQPVIYGRGP  21
                  G +    QP+ YG  P
Sbjct  448  MYVGQNGASMVPSQPIGYGFQP  469


 Score = 39.7 bits (91),  Expect = 0.004
 Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
 Frame = -2

Query  416  LYVKNIPDNTSTEKLKEVFQRHGEVIK-VVMPPGKAGKRDFGFIHYAERSSALKAVKDTE  240
            +YVKN+P     ++L++ F + G +   VVM       R FGF+++    +A  AV+   
Sbjct  231  VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN  290

Query  239  KYEIDGQVLEVVLAKPQTDKKTD  171
               +   VL V  A+ +++++ +
Sbjct  291  GISLGDDVLYVGRAQKKSEREEE  313


>gi|3287682|gb|AAC25510.1|AAC25510  Strong similarity to gb|M97657 poly(A)-binding protein (PABP5) 
from A. thaliana. [Arabidopsis thaliana]
Length=655

 Score = 60.8 bits (146),  Expect = 2e-09
 Identities = 49/149 (32%), Positives = 70/149 (46%), Gaps = 13/149 (8%)
 Frame = -2

Query  431  SQVKALYVKNIPDNTSTEKLKEVFQRHGEVI--KVVMPPGKAGKRDFGFIHYAERSSALK  258
            SQ   LY+KN+ D+   EKLKE+F  +G V   KV++ P +   R FGF+ Y+    AL+
Sbjct  329  SQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNP-QGMSRGFGFVAYSNPEEALR  387

Query  257  AVKDTEKYEIDGQVLEVVLAKPQTDKKTD----AAYPYSAGLHPNQLSHPG-----YGGF  105
            A+ +     I  + L + LA+ + D++      A  P S   HP     PG     Y G 
Sbjct  388  ALSEMNGKMIGRKPLYIALAQRKEDRRAHLQIRAPGPMSGFHHPPGGPMPGPPQHMYVGQ  447

Query  104  TGAPYA-SVSAGFGVATSFQQPVIYGRGP  21
             GA    S   G+G    F   +  G GP
Sbjct  448  NGASMVPSQPIGYGFQPQFMPGMRPGSGP  476


 Score = 39.7 bits (91),  Expect = 0.004
 Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
 Frame = -2

Query  416  LYVKNIPDNTSTEKLKEVFQRHGEVIK-VVMPPGKAGKRDFGFIHYAERSSALKAVKDTE  240
            +YVKN+P     ++L++ F + G +   VVM       R FGF+++    +A  AV+   
Sbjct  231  VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN  290

Query  239  KYEIDGQVLEVVLAKPQTDKKTD  171
               +   VL V  A+ +++++ +
Sbjct  291  GISLGDDVLYVGRAQKKSEREEE  313


>gi|84468322|dbj|BAE71244.1|  putative DNA binding protein [Trifolium pratense]
Length=402

 Score = 60.5 bits (145),  Expect = 2e-09
 Identities = 40/142 (28%), Positives = 73/142 (51%), Gaps = 16/142 (11%)
 Frame = -2

Query  416  LYVKNIPDNTSTEKLKEVFQRHGEVIKVVMPPGKAGKRDFGFIHYAERSSALKAVKDTEK  237
            ++V N+  N + + L++VF ++GE++ V +P GK      GF+ +++RSSA +A++    
Sbjct  261  IFVGNLDPNVTDDHLRQVFSQYGELVHVKIPSGKR----CGFVQFSDRSSAEEAIRVLNG  316

Query  236  YEIDGQVLEVVLAKPQTDKKTDAAYPYSAGLHPNQ---LSHPGYGGFTGAPYASV-SAGF  69
              + GQ + +   +  ++K+T           PNQ    +  G GG+ G P     + G+
Sbjct  317  TLLGGQNVRLSWGRTPSNKQTQQ--------DPNQWNAAAAGGGGGYYGYPQGGYENYGY  368

Query  68   GVATSFQQPVIYGRGPMPSGMQ  3
              A + Q P +YG  P  +G Q
Sbjct  369  AAAPAGQDPNVYGSYPGYAGYQ  390


>gi|34393486|dbj|BAC83046.1|  putative RRM RNA binding protein NSAP1 [Oryza sativa (japonica 
cultivar-group)]
Length=613

 Score = 56.2 bits (134),  Expect = 4e-08
 Identities = 34/92 (36%), Positives = 55/92 (59%), Gaps = 10/92 (10%)
 Frame = -2

Query  428  QVKALYVKNIPDNTSTEKLKEVFQRHGEVIKVV----MPPGKAGKRDFGFIHYAERSSAL  261
            QVK+++V  IP +    +LKE+F++HG++  VV    MP  K  +RDF FI+Y  R +A+
Sbjct  409  QVKSIFVDGIPTSWDHAQLKEIFKKHGKIESVVLSRDMPSAK--RRDFAFINYITREAAI  466

Query  260  KAVK--DTEKYEIDGQV--LEVVLAKPQTDKK  177
              ++  D E++  +G    ++V LAKP    K
Sbjct  467  SCLESFDKEEFSKNGSKVNIKVSLAKPAQQSK  498


>gi|115489250|ref|NP_001067112.1|  Os12g0577000 [Oryza sativa (japonica cultivar-group)]
 gi|113649619|dbj|BAF30131.1|  Os12g0577000 [Oryza sativa (japonica cultivar-group)]
Length=980

 Score = 55.8 bits (133),  Expect = 6e-08
 Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
 Frame = -2

Query  446  DHSAASQVKALYVKNIPDNTSTEKLKEVFQRHGEVIKVVMPPGKAGKRDFGFIHYAERSS  267
            D    ++VK  +V N+P N + E L+++F+  GEV++V +   + G+   GF+H+A R+ 
Sbjct  596  DEDEMAKVKTAFVGNLPANVTEEYLRKLFEHCGEVVRVAV--SRKGQYPVGFVHFASRTE  653

Query  266  ALKAVKDTEKYEIDGQVLEVVLAKPQTDKK  177
               A+K     E+DG+ + V     + DKK
Sbjct  654  LDNAIK-----EMDGETVSVARPVVENDKK  678


>gi|92891584|gb|ABE90872.1|  RNA-binding region RNP-1 (RNA recognition motif) [Medicago truncatula]
Length=428

 Score = 55.8 bits (133),  Expect = 6e-08
 Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 32/162 (19%)
 Frame = -2

Query  416  LYVKNIPDNTSTEKLKEVFQRHGEVIKVVMPPGKAGKRDFGFIHYAERSSALKAVKDTEK  237
            +YV N+  N S E+LK+ F + GE++ V + PGKA     GF+ +  R+SA +A++  + 
Sbjct  236  IYVGNLDLNVSEEELKQNFLQFGEIVSVKVHPGKA----CGFVQFGARASAEEAIQKMQG  291

Query  236  YEIDGQVLEVVLAKPQTDKKT------------------------DAAYPYSAGLHPNQL  129
              +  QV+ V   +PQT ++                           AY Y A   P+  
Sbjct  292  KILGQQVIRVSWGRPQTARQDVPGGWGQQVDQSQWSAYYGYGQPGYEAYAYGAAQDPSMY  351

Query  128  SHPGYGGFTGAPY----ASVSAGFGVATSFQQPVIYGRGPMP  15
            ++ GY  +   P     A   +   V T  Q+  +Y    MP
Sbjct  352  AYAGYASYAQYPQQVEGAQDVSAMSVPTLEQREELYDPLAMP  393


 Score = 30.4 bits (67),  Expect = 2.6
 Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
 Frame = -2

Query  419  ALYVKNIPDNTSTEKLKEVFQRH-GEV--IKVVMPPGKAGKRDFGFIHYAERSSALKAVK  249
            +++V ++  + +   L+E F+ H G V   KVV  P     + +GF+ +++ S   +A+ 
Sbjct  109  SIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMS  168

Query  248  DTEKYEIDGQVLEVVLAKPQTDKKTDA--AYPYSA  150
            +        + + +  A P   KKT      PY+A
Sbjct  169  EMNGVYCSTRPMRISAATP---KKTTGYQQNPYAA  200


>gi|21591633|gb|AAM64164.1|AF515695_1  cleavage stimulation factor 64 [Arabidopsis thaliana]
Length=461

 Score = 55.8 bits (133),  Expect = 6e-08
 Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 11/136 (8%)
 Frame = -2

Query  440  SAASQVKALYVKNIPDNTSTEKLKEVFQRHGEVIKV-VMPPGKAGK-RDFGFIHYAERSS  267
            S++SQ + ++V NIP + + E+L+E+    G V+   ++   + GK + +GF  Y +  +
Sbjct  3    SSSSQRRCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEET  62

Query  266  ALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTDAAYPYSAGLHPNQLSHPGYGGFTGAPYA  87
            AL A ++ + YEI+G+ L V  A  + DK TD     S G        PG    T    +
Sbjct  63   ALSARRNLQSYEINGRQLRVDFA--ENDKGTDKTRDQSQG-------GPGLPSTTTVTES  113

Query  86   SVSAGFGVATSFQQPV  39
                G  V ++  QPV
Sbjct  114  QKQIGGPVDSNMHQPV  129


>gi|22330574|ref|NP_177325.2|  RNA binding / nucleic acid binding [Arabidopsis thaliana]
 gi|7239507|gb|AAF43233.1|AC012654_17  Contains similarity to the polyadenylation factor 64 kDa subunit 
from Xenopus laevis gb|U17394; It contains RNA recognition 
motif PF|00076.  ESTs gb|AI993960 and T42211 come from this 
gene. [Arabidopsis thaliana]
 gi|110738120|dbj|BAF00992.1|  cleavage stimulation factor like protein [Arabidopsis thaliana]
Length=461

 Score = 55.8 bits (133),  Expect = 6e-08
 Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 11/136 (8%)
 Frame = -2

Query  440  SAASQVKALYVKNIPDNTSTEKLKEVFQRHGEVIKV-VMPPGKAGK-RDFGFIHYAERSS  267
            S++SQ + ++V NIP + + E+L+E+    G V+   ++   + GK + +GF  Y +  +
Sbjct  3    SSSSQRRCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEET  62

Query  266  ALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTDAAYPYSAGLHPNQLSHPGYGGFTGAPYA  87
            AL A ++ + YEI+G+ L V  A  + DK TD     S G        PG    T    +
Sbjct  63   ALSARRNLQSYEINGRQLRVDFA--ENDKGTDKTRDQSQG-------GPGLPSTTTVTES  113

Query  86   SVSAGFGVATSFQQPV  39
                G  V ++  QPV
Sbjct  114  QKQIGGPVDSNMHQPV  129


>gi|115468588|ref|NP_001057893.1|  Os06g0566100 [Oryza sativa (japonica cultivar-group)]
 gi|113595933|dbj|BAF19807.1|  Os06g0566100 [Oryza sativa (japonica cultivar-group)]
Length=292

 Score = 55.5 bits (132),  Expect = 7e-08
 Identities = 37/153 (24%), Positives = 73/153 (47%), Gaps = 22/153 (14%)
 Frame = -2

Query  428  QVKALYVKNIPDNTSTEKLKEVFQRHGEVIK--VVMPPGKAGKRDFGFIHYAERSSALKA  255
            + + ++V  IP + + +KLKE F  +G+V++  +++  G    R FGF+ +    +  + 
Sbjct  63   KTRKIFVGGIPPSLTEDKLKEHFSSYGKVVEHQIMLDHGTGRSRGFGFVTFENEDAVERV  122

Query  254  VKDTEKYEIDGQVLEVVLAKPQTDKKTD----------------AAYPYSAGLHPNQLSH  123
            + +   +++ G+ +E+  A+P+     D                ++Y  S G +    S 
Sbjct  123  MSEGRMHDLAGKQVEIKKAEPKKPGGGDSSSNGRHSHGSGGGHRSSYRGSGGGNSGSSSS  182

Query  122  PGYGGFTGAPYASVSAGFGVATSFQQPVIYGRG  24
             GYGG+ G  Y S +A +  +T +     YGRG
Sbjct  183  GGYGGY-GGGYRSAAAAYYGSTGYAG---YGRG  211


>gi|53793272|dbj|BAD54495.1|  putative Heterogeneous nuclear ribonucleoproteins A1 homolog 
[Oryza sativa (japonica cultivar-group)]
 gi|53793315|dbj|BAD54536.1|  putative Heterogeneous nuclear ribonucleoproteins A1 homolog 
[Oryza sativa (japonica cultivar-group)]
Length=285

 Score = 55.5 bits (132),  Expect = 7e-08
 Identities = 37/153 (24%), Positives = 73/153 (47%), Gaps = 22/153 (14%)
 Frame = -2

Query  428  QVKALYVKNIPDNTSTEKLKEVFQRHGEVIK--VVMPPGKAGKRDFGFIHYAERSSALKA  255
            + + ++V  IP + + +KLKE F  +G+V++  +++  G    R FGF+ +    +  + 
Sbjct  56   KTRKIFVGGIPPSLTEDKLKEHFSSYGKVVEHQIMLDHGTGRSRGFGFVTFENEDAVERV  115

Query  254  VKDTEKYEIDGQVLEVVLAKPQTDKKTD----------------AAYPYSAGLHPNQLSH  123
            + +   +++ G+ +E+  A+P+     D                ++Y  S G +    S 
Sbjct  116  MSEGRMHDLAGKQVEIKKAEPKKPGGGDSSSNGRHSHGSGGGHRSSYRGSGGGNSGSSSS  175

Query  122  PGYGGFTGAPYASVSAGFGVATSFQQPVIYGRG  24
             GYGG+ G  Y S +A +  +T +     YGRG
Sbjct  176  GGYGGY-GGGYRSAAAAYYGSTGYAG---YGRG  204


>gi|166786|gb|AAA32832.1|  poly(A)-binding protein
Length=668

 Score = 53.9 bits (128),  Expect = 2e-07
 Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 12/141 (8%)
 Frame = -2

Query  416  LYVKNIPDNTSTEKLKEVFQRHGEVIKV-VMPPGKAGKRDFGFIHYAERSSALKAVKDTE  240
            LY+KN+ D+ + EKLKE+F  +G V    VM   +   R FGF+ Y+    AL A+K+  
Sbjct  330  LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMN  389

Query  239  KYEIDGQVLEVVLAKPQTDKK-------TDAAYPYSAGLHPNQLS----HPGYGGFTGAP  93
               I  + L V LA+ + +++       T    P +    P+ +S    HP  G  +G  
Sbjct  390  GKMIGRKPLYVALAQRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPH  449

Query  92   YASVSAGFGVATSFQQPVIYG  30
            +       G      QP+ YG
Sbjct  450  HPMFIGHNGQGLVPSQPMGYG  470


 Score = 47.4 bits (111),  Expect = 2e-05
 Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
 Frame = -2

Query  416  LYVKNIPDNTSTEKLKEVFQRHGEVIK-VVMPPGKAGKRDFGFIHYAERSSALKAVKDTE  240
            +YVKN+P   + ++LK+ F ++G++   VVM       R FGF+++    +A  AV+   
Sbjct  227  VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN  286

Query  239  KYEIDGQVLEVVLAKPQTDKKTD  171
               +   VL V  A+ ++D++ +
Sbjct  287  GISLGEDVLYVGRAQKKSDREEE  309


>gi|15217573|ref|NP_177322.1|  PAB5 (POLY(A)-BINDING PROTEIN); RNA binding [Arabidopsis thaliana]
 gi|21542448|sp|Q05196|PABP5_ARATH  Polyadenylate-binding protein 5 (Poly(A)-binding protein 5) (PABP 
5)
 gi|7239504|gb|AAF43230.1|AC012654_14  Identical to the polyadenylate-binding protein 5 (PAB5) from 
Arabidopsis thaliana gb|M97657
Length=668

 Score = 53.9 bits (128),  Expect = 2e-07
 Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 12/141 (8%)
 Frame = -2

Query  416  LYVKNIPDNTSTEKLKEVFQRHGEVIKV-VMPPGKAGKRDFGFIHYAERSSALKAVKDTE  240
            LY+KN+ D+ + EKLKE+F  +G V    VM   +   R FGF+ Y+    AL A+K+  
Sbjct  330  LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMN  389

Query  239  KYEIDGQVLEVVLAKPQTDKK-------TDAAYPYSAGLHPNQLS----HPGYGGFTGAP  93
               I  + L V LA+ + +++       T    P +    P+ +S    HP  G  +G  
Sbjct  390  GKMIGRKPLYVALAQRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPH  449

Query  92   YASVSAGFGVATSFQQPVIYG  30
            +       G      QP+ YG
Sbjct  450  HPMFIGHNGQGLVPSQPMGYG  470


 Score = 47.4 bits (111),  Expect = 2e-05
 Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
 Frame = -2

Query  416  LYVKNIPDNTSTEKLKEVFQRHGEVIK-VVMPPGKAGKRDFGFIHYAERSSALKAVKDTE  240
            +YVKN+P   + ++LK+ F ++G++   VVM       R FGF+++    +A  AV+   
Sbjct  227  VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN  286

Query  239  KYEIDGQVLEVVLAKPQTDKKTD  171
               +   VL V  A+ ++D++ +
Sbjct  287  GISLGEDVLYVGRAQKKSDREEE  309


>gi|2708532|gb|AAB92518.1|  putative RNA binding protein [Nicotiana tabacum]
Length=482

 Score = 52.8 bits (125),  Expect = 5e-07
 Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 27/142 (19%)
 Frame = -2

Query  416  LYVKNIPDNTSTEKLKEVFQRHGEVIKVVMPPGKAGKRDFGFIHYAERSSALKAVKDTEK  237
            ++V  +  + + E+L++ F + GEV+ V +P GK      GF+ +++RSSA +A++    
Sbjct  351  IFVGGLDSDVTDEELRQSFNQFGEVVSVKIPAGKG----CGFVQFSDRSSAQEAIQKLSG  406

Query  236  YEIDGQVLEVVLAKPQTDK--KTDAAYPYSAGLHPNQLSHPGYGGF--------------  105
              I  Q + +   +   +K  + D+   ++ G +  Q     YGG+              
Sbjct  407  AIIGKQAVRLSWGRSPANKQMRADSGSQWNGGYNGRQ----NYGGYGYGASQNQDSGMYA  462

Query  104  TGAPYASVSAGFGVATSFQQPV  39
            TGA Y + S G+G   + QQPV
Sbjct  463  TGAAYGASSNGYG---NHQQPV  481


>gi|116058934|emb|CAL54641.1|  RNA-binding protein ELAV/HU (RRM superfamily) (ISS) [Ostreococcus 
tauri]
Length=504

 Score = 52.4 bits (124),  Expect = 6e-07
 Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
 Frame = -2

Query  446  DHSAASQVKA--LYVKNIPDNTSTEKLKEVFQRHGEVIKVVMPPGKAGK-RDFGFIHYAE  276
            D S   + K   +YVKN+ +N S EKL+E F  HG V   V+   + GK + FGF+ +  
Sbjct  200  DRSTQGEAKFNNVYVKNLSENLSDEKLREKFAEHGAVTSCVIMKDEEGKSKGFGFVCFES  259

Query  275  RSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTDAAYPYSA  150
               A  AV++ + Y  D +   V  A+ + +++ +    + A
Sbjct  260  PEGAASAVENLDGYTEDEKTWVVCRAQKKAEREAELKAKFEA  301


 Score = 40.4 bits (93),  Expect = 0.002
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = -2

Query  416  LYVKNIPDNTSTEKLKEVFQRHGEVIKV-VMPPGKAGKRDFGFIHYAERSSALKAVKDTE  240
            LY+KN+ + T  EKL+E+F   G +    VM       R   F+ ++    A +AV +  
Sbjct  315  LYIKNLEEGTDDEKLRELFNEFGTITSCRVMRDASGASRGSAFVAFSSPDEATRAVTEMN  374

Query  239  KYEIDGQVLEVVLAK  195
               +  + L V LA+
Sbjct  375  GKMVGAKPLYVALAQ  389


>gi|18416906|ref|NP_567764.1|  RNA binding [Arabidopsis thaliana]
 gi|13878153|gb|AAK44154.1|AF370339_1  putative DNA binding protein [Arabidopsis thaliana]
 gi|15450814|gb|AAK96678.1|  putative DNA binding protein [Arabidopsis thaliana]
 gi|17104569|gb|AAL34173.1|  putative DNA binding protein [Arabidopsis thaliana]
 gi|20259888|gb|AAM13291.1|  putative DNA binding protein [Arabidopsis thaliana]
Length=415

 Score = 52.0 bits (123),  Expect = 8e-07
 Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 15/131 (11%)
 Frame = -2

Query  416  LYVKNIPDNTSTEKLKEVFQRHGEVIKVVMPPGKAGKRDFGFIHYAERSSALKAVKDTEK  237
            ++V  +  + + + LK VF + GE++ V +P GK      GF+ YA R+ A +A+     
Sbjct  280  IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKR----CGFVQYANRACAEQALSVLNG  335

Query  236  YEIDGQVLEVVLAKPQTDKKTDAAYPYSAGLHPNQLSHPGYGGFTGAPYASVSAGFGVAT  57
             ++ GQ + +   +  ++K+T           P+Q  + G GG+ G P     A +G A 
Sbjct  336  TQLGGQSIRLSWGRSPSNKQT----------QPDQAQYGGGGGYYGYPPQGYEA-YGYAP  384

Query  56   SFQQPVIYGRG  24
              Q P  Y  G
Sbjct  385  PPQDPNAYYGG  395


>gi|4455223|emb|CAB36546.1|  putative DNA binding protein [Arabidopsis thaliana]
 gi|7269553|emb|CAB79555.1|  putative DNA binding protein [Arabidopsis thaliana]
Length=427

 Score = 52.0 bits (123),  Expect = 8e-07
 Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 15/131 (11%)
 Frame = -2

Query  416  LYVKNIPDNTSTEKLKEVFQRHGEVIKVVMPPGKAGKRDFGFIHYAERSSALKAVKDTEK  237
            ++V  +  + + + LK VF + GE++ V +P GK      GF+ YA R+ A +A+     
Sbjct  280  IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKR----CGFVQYANRACAEQALSVLNG  335

Query  236  YEIDGQVLEVVLAKPQTDKKTDAAYPYSAGLHPNQLSHPGYGGFTGAPYASVSAGFGVAT  57
             ++ GQ + +   +  ++K+T           P+Q  + G GG+ G P     A +G A 
Sbjct  336  TQLGGQSIRLSWGRSPSNKQT----------QPDQAQYGGGGGYYGYPPQGYEA-YGYAP  384

Query  56   SFQQPVIYGRG  24
              Q P  Y  G
Sbjct  385  PPQDPNAYYGG  395


>gi|2935338|gb|AAC39368.1|  poly(A) binding protein RB47 [Chlamydomonas reinhardtii]
Length=623

 Score = 52.0 bits (123),  Expect = 8e-07
 Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
 Frame = -2

Query  416  LYVKNIPDNTSTEKLKEVFQRHGEVIK-VVMPPGKAGKRDFGFIHYAERSSALKAVKDTE  240
            ++VKN+P +   ++L ++   HGE+   VVM   K G + FGFI++ +  SA K V+   
Sbjct  205  VFVKNLPADIGDDELGKMATEHGEITSAVVMKDDKGGSKGFGFINFKDAESAAKCVEYLN  264

Query  239  KYEIDGQVLEVVLAKPQTDKK  177
            + E+ G+ L    A+ +T+++
Sbjct  265  EREMSGKTLYAGRAQKKTERE  285


 Score = 40.4 bits (93),  Expect = 0.002
 Identities = 17/85 (20%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
 Frame = -2

Query  431  SQVKALYVKNIPDNTSTEKLKEVFQRHGEVIKVVMPPGKAG-KRDFGFIHYAERSSALKA  255
            S V  +++KN+      + L + F   G+++   +     G  + +GF+H+ ++++A +A
Sbjct  111  SGVGNIFIKNLDKTIDAKALHDTFSAFGKILSCKVATDANGVSKGYGFVHFEDQAAADRA  170

Query  254  VKDTEKYEIDGQVLEVVLAKPQTDK  180
            ++   + +I+G+++ V   + + D+
Sbjct  171  IQTVNQKKIEGKIVYVAPFQKRADR  195


>gi|115477976|ref|NP_001062583.1|  Os09g0115400 [Oryza sativa (japonica cultivar-group)]
 gi|46389987|dbj|BAD16229.1|  putative poly(A)-binding protein [Oryza sativa (japonica cultivar-group)]
 gi|113630816|dbj|BAF24497.1|  Os09g0115400 [Oryza sativa (japonica cultivar-group)]
Length=662

 Score = 51.6 bits (122),  Expect = 1e-06
 Identities = 45/158 (28%), Positives = 70/158 (44%), Gaps = 28/158 (17%)
 Frame = -2

Query  416  LYVKNIPDNTSTEKLKEVFQRHGEVIKV-VMPPGKAGKRDFGFIHYAERSSALKAVKDTE  240
            LY+KN+ D+   +KL+E+F  +G +    VM       R  GF+ +     A +A+ +  
Sbjct  324  LYLKNLDDSVDDDKLRELFAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEMN  383

Query  239  KYEIDGQVLEVVLAKPQTDKKTDAAYPYSAGLHPNQLS----------HPGYGG-----F  105
               +  + L V LA+ + D+K      +S  L P  L+           PG  G     F
Sbjct  384  SKMVGSKPLYVALAQRKEDRKARLQAQFSQ-LRPVPLAPSVGPRMPMFPPGVPGVGQQLF  442

Query  104  TGAP---YASVSAGFGVATSFQQPVI----YGRGPMPS  12
             G P   + +   GFG    FQQP++     G GPMP+
Sbjct  443  YGQPPPAFINTQPGFG----FQQPLMPGMRPGAGPMPN  476


 Score = 47.8 bits (112),  Expect = 2e-05
 Identities = 25/92 (27%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
 Frame = -2

Query  416  LYVKNIPDNTSTEKLKEVFQRHGEVIK-VVMPPGKAGKRDFGFIHYAERSSALKAVKDTE  240
            +YVKN+ +NT+ + LKE+F + G +   VVM  G    + FGF+++     A +AV++  
Sbjct  221  VYVKNLSENTTEDDLKEIFGKFGTITSAVVMREGDGRSKCFGFVNFESPDDAAQAVQELN  280

Query  239  KYEIDGQVLEVVLAKPQTDKKTDAAYPYSAGL  144
              + D +   V  A+ +++++ +    +   L
Sbjct  281  GKKFDDKEWYVGRAQKKSEREMELKEKFEKNL  312


>gi|9663769|emb|CAC01238.1|  RNA Binding Protein 47 [Nicotiana plumbaginifolia]
Length=428

 Score = 51.2 bits (121),  Expect = 1e-06
 Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 27/142 (19%)
 Frame = -2

Query  416  LYVKNIPDNTSTEKLKEVFQRHGEVIKVVMPPGKAGKRDFGFIHYAERSSALKAVKDTEK  237
            ++V  +    + E+L++ F + GEV+ V +P GK      GF+ +++RSSA +A++    
Sbjct  297  IFVGGLDSEVTDEELRQSFNQFGEVVSVKIPAGKG----CGFVQFSDRSSAQEAIQKLSG  352

Query  236  YEIDGQVLEVVLAKPQTDK--KTDAAYPYSAGLHPNQLSHPGYGGF--------------  105
              I  Q + +   +   +K  +TD+   ++ G +  Q     YGG+              
Sbjct  353  AIIGKQAVRLSWGRSPANKQMRTDSGSQWNGGYNGRQ----NYGGYGYGASQNQDSGMYA  408

Query  104  TGAPYASVSAGFGVATSFQQPV  39
            TGA Y + S  +G   + QQPV
Sbjct  409  TGAAYGASSNRYG---NHQQPV  427


>gi|19347816|gb|AAL86321.1|  putative poly(A)-binding protein [Arabidopsis thaliana]
Length=613

 Score = 51.2 bits (121),  Expect = 1e-06
 Identities = 25/92 (27%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
 Frame = -2

Query  416  LYVKNIPDNTSTEKLKEVFQRHGEVIK-VVMPPGKAGKRDFGFIHYAERSSALKAVKDTE  240
            +YVKN+ ++T+ + LK  F  +G++   VVM  G+   + FGF+++     A +AV+   
Sbjct  201  VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN  260

Query  239  KYEIDGQVLEVVLAKPQTDKKTDAAYPYSAGL  144
             ++ D +   V  A+ +++++T+    Y   L
Sbjct  261  GHKFDDKEWYVGRAQKKSERETELRVRYEQNL  292


 Score = 46.2 bits (108),  Expect = 5e-05
 Identities = 44/158 (27%), Positives = 66/158 (41%), Gaps = 20/158 (12%)
 Frame = -2

Query  428  QVKALYVKNIPDNTSTEKLKEVFQRHGEVI--KVVMPPGKAGKRDFGFIHYAERSSALKA  255
            Q   LYVKN+  + S EKLKE+F   G V   KV+  P    K   GF+ +A    A +A
Sbjct  300  QSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGS-GFVAFATPEEATEA  358

Query  254  VKDTEKYEIDGQVLEVVLAKPQTDKKTDAAYPYS--------AGLHPNQLSHPGYGGFTG  99
            +       I+ + L V +A+ + D++      +S          + P    +P  G   G
Sbjct  359  MSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSVGPRMPVYPPGGPGIG  418

Query  98   -------APYASV--SAGFGVATSFQQPVIYGRGPMPS  12
                   AP A +    G+G        +  G GP+PS
Sbjct  419  QQMFYGQAPPAMIPPQPGYGYQQQLVPGMRPGGGPVPS  456


 Score = 35.4 bits (80),  Expect = 0.080
 Identities = 14/57 (24%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = -2

Query  416  LYVKNIPDNTSTEKLKEVFQRHGEVIKVVMPPGKAGK-RDFGFIHYAERSSALKAVK  249
            +++KN+ ++   + L + F   G ++   +    +G+ + +GF+ YA   SA KA++
Sbjct  110  IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIE  166


>gi|30689921|ref|NP_195137.2|  PAB2 (POLY(A)-BINDING PROTEIN 2); RNA binding [Arabidopsis thaliana]
Length=443

 Score = 51.2 bits (121),  Expect = 1e-06
 Identities = 25/92 (27%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
 Frame = -2

Query  416  LYVKNIPDNTSTEKLKEVFQRHGEVIK-VVMPPGKAGKRDFGFIHYAERSSALKAVKDTE  240
            +YVKN+ ++T+ + LK  F  +G++   VVM  G+   + FGF+++     A +AV+   
Sbjct  31   VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN  90

Query  239  KYEIDGQVLEVVLAKPQTDKKTDAAYPYSAGL  144
             ++ D +   V  A+ +++++T+    Y   L
Sbjct  91   GHKFDDKEWYVGRAQKKSERETELRVRYEQNL  122


 Score = 46.2 bits (108),  Expect = 5e-05
 Identities = 44/158 (27%), Positives = 66/158 (41%), Gaps = 20/158 (12%)
 Frame = -2

Query  428  QVKALYVKNIPDNTSTEKLKEVFQRHGEVI--KVVMPPGKAGKRDFGFIHYAERSSALKA  255
            Q   LYVKN+  + S EKLKE+F   G V   KV+  P    K   GF+ +A    A +A
Sbjct  130  QSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGS-GFVAFATPEEATEA  188

Query  254  VKDTEKYEIDGQVLEVVLAKPQTDKKTDAAYPYS--------AGLHPNQLSHPGYGGFTG  99
            +       I+ + L V +A+ + D++      +S          + P    +P  G   G
Sbjct  189  MSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSVGPRMPVYPPGGPGIG  248

Query  98   -------APYASV--SAGFGVATSFQQPVIYGRGPMPS  12
                   AP A +    G+G        +  G GP+PS
Sbjct  249  QQMFYGQAPPAMIPPQPGYGYQQQLVPGMRPGGGPVPS  286


>gi|1171978|sp|P42731|PABP2_ARATH  Polyadenylate-binding protein 2 (Poly(A)-binding protein 2) (PABP 
2)
 gi|304109|gb|AAA61780.1|  poly(A)-binding protein
 gi|2911051|emb|CAA17561.1|  poly(A)-binding protein [Arabidopsis thaliana]
 gi|7270360|emb|CAB80128.1|  poly(A)-binding protein [Arabidopsis thaliana]
 gi|26983870|gb|AAN86187.1|  putative polyadenylate-binding protein 2 (PABP2) [Arabidopsis 
thaliana]
Length=629

 Score = 51.2 bits (121),  Expect = 1e-06
 Identities = 25/92 (27%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
 Frame = -2

Query  416  LYVKNIPDNTSTEKLKEVFQRHGEVIK-VVMPPGKAGKRDFGFIHYAERSSALKAVKDTE  240
            +YVKN+ ++T+ + LK  F  +G++   VVM  G+   + FGF+++     A +AV+   
Sbjct  217  VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN  276

Query  239  KYEIDGQVLEVVLAKPQTDKKTDAAYPYSAGL  144
             ++ D +   V  A+ +++++T+    Y   L
Sbjct  277  GHKFDDKEWYVGRAQKKSERETELRVRYEQNL  308


 Score = 46.2 bits (108),  Expect = 5e-05
 Identities = 44/158 (27%), Positives = 66/158 (41%), Gaps = 20/158 (12%)
 Frame = -2

Query  428  QVKALYVKNIPDNTSTEKLKEVFQRHGEVI--KVVMPPGKAGKRDFGFIHYAERSSALKA  255
            Q   LYVKN+  + S EKLKE+F   G V   KV+  P    K   GF+ +A    A +A
Sbjct  316  QSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGS-GFVAFATPEEATEA  374

Query  254  VKDTEKYEIDGQVLEVVLAKPQTDKKTDAAYPYS--------AGLHPNQLSHPGYGGFTG  99
            +       I+ + L V +A+ + D++      +S          + P    +P  G   G
Sbjct  375  MSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSVGPRMPVYPPGGPGIG  434

Query  98   -------APYASV--SAGFGVATSFQQPVIYGRGPMPS  12
                   AP A +    G+G        +  G GP+PS
Sbjct  435  QQMFYGQAPPAMIPPQPGYGYQQQLVPGMRPGGGPVPS  472


 Score = 35.4 bits (80),  Expect = 0.080
 Identities = 14/57 (24%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = -2

Query  416  LYVKNIPDNTSTEKLKEVFQRHGEVIKVVMPPGKAGK-RDFGFIHYAERSSALKAVK  249
            +++KN+ ++   + L + F   G ++   +    +G+ + +GF+ YA   SA KA++
Sbjct  126  IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIE  182


>gi|115481496|ref|NP_001064341.1|  Os10g0321700 [Oryza sativa (japonica cultivar-group)]
 gi|110288867|gb|ABG66004.1|  RNA recognition motif family protein, expressed [Oryza sativa 
(japonica cultivar-group)]
 gi|113638950|dbj|BAF26255.1|  Os10g0321700 [Oryza sativa (japonica cultivar-group)]
Length=317

 Score = 50.8 bits (120),  Expect = 2e-06
 Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
 Frame = -2

Query  416  LYVKNIPDNTSTEKLKEVFQRHGEVI--KVVMPPGKAGKRDFGFIHYAERSSALKAVKDT  243
            L++  I   T  + LKE F  +GEVI  +V++       R FGF+ Y     A  A+   
Sbjct  33   LFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAAAITGM  92

Query  242  EKYEIDGQVLEVVLAKPQTDKKTDAAYPYSAGLHPNQLSHPGYGGFTGAPYASVSA  75
            +  ++ G+++ V  A  +  +    A  Y  G +  Q ++ G GG+ G  Y    A
Sbjct  93   DGKDLQGRIVRVSYAHDRGSR----AGGYGGGGYSGQGTYGGGGGYGGGGYGGQDA  144


>gi|18419943|ref|NP_568011.1|  RNA binding / nucleic acid binding [Arabidopsis thaliana]
 gi|15081787|gb|AAK82548.1|  AT4g36960/C7A10_400 [Arabidopsis thaliana]
 gi|23308345|gb|AAN18142.1|  At4g36960/C7A10_400 [Arabidopsis thaliana]
Length=379

 Score = 50.8 bits (120),  Expect = 2e-06
 Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 12/147 (8%)
 Frame = -2

Query  434  ASQVKALYVKNIPDNTSTEKLKEVFQRHGEVIKVVMPPGKAGK--RDFGFIHYAERSSAL  261
            A +V  ++V  IP + S    +  F+R+GE+  + MP     K  R  GFI ++   S  
Sbjct  87   AKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVE  146

Query  260  KAVKDTEKYEIDGQVLEVVLAKPQTDKKTDAAYPYSAGLHPNQLSHPGYG--GFTGAPYA  87
              ++DT  +++ G  + V  A P+ D       P +    P      G+G  G  GA  A
Sbjct  147  DLMEDT--HDLGGTTVAVDRATPKEDDHPPRPPPVARMSRPPVAIAGGFGAPGGYGAYDA  204

Query  86   SVS-----AGFGVATSFQQP-VIYGRG  24
             +S     A  G  T +  P   YGRG
Sbjct  205  YISAATRYAALGAPTLYDNPATFYGRG  231


 Score = 47.8 bits (112),  Expect = 2e-05
 Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 9/119 (7%)
 Frame = -2

Query  416  LYVKNIPDNTSTEKLKEVFQRHGEVIKVVMP--PGKAGKRDFGFIHYAERSSALKAVKDT  243
            ++V  +P   S + L++ F R G +    +P  P ++G R FGF+ +AE   A +  +  
Sbjct  242  IFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVAR--  299

Query  242  EKYEIDGQVLEVVLAKPQTDKKTDAAYPYSAGLHPNQLSHPGYGGFTGAPYASVSAGFG  66
              +EI GQ + +  A P      D A P +        S P Y G  G P  +    +G
Sbjct  300  RSHEICGQEVAIDSATP-----LDEAGPSAGASSMLSSSRPEYFGGYGGPMRAFGRMYG  353


>gi|53792441|dbj|BAD53349.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length=407

 Score = 50.8 bits (120),  Expect = 2e-06
 Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
 Frame = -2

Query  440  SAASQVKALYVKNIPDNTSTEKLKEVFQRHGEVIK--VVMPPGKAGKRDFGFIHYAERSS  267
            S   Q + ++V  +P + + +KLKE F + GEV +  VV+       R FGFI +A   S
Sbjct  213  SPGDQKRKIFVGGLPVSATEKKLKEYFNKFGEVNRAIVVIDLNTKMPRGFGFIQFASEES  272

Query  266  ALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTDAAYPYSAGLHP  138
              +A+K  +K+ + GQ +EV LA P+           S    P
Sbjct  273  TARALK-KDKHFLCGQWVEVSLAMPKQQNAASGTSKLSVQARP  314


>gi|6566348|dbj|BAA88269.1|  RNA binding protein [Arabidopsis thaliana]
Length=381

 Score = 50.8 bits (120),  Expect = 2e-06
 Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 11/137 (8%)
 Frame = -2

Query  443  HSAASQVKALYVKNIPDNTSTEKLKEVFQRHGEVIK-VVMPPGKAGK-RDFGFIHYAERS  270
            +   S+ K ++V  +  NT+ E+ K  F+R G     VVM  G   + R FGF+ Y +  
Sbjct  113  NGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTY-DSE  171

Query  269  SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTDAAYPYSAGLHPNQLSHPGYGGFTGAPY  90
             +++ V  +  +E+  + +EV  A P+   +++     +          P Y  F   PY
Sbjct  172  DSVEVVMQSNFHELSDKRVEVKRAIPKEGIQSNNGNAVNI--------PPSYSSFQATPY  223

Query  89   ASVSAGFGVATSFQQPV  39
                 G+G+   F  PV
Sbjct  224  VPEQNGYGMVLQFPPPV  240


 Score = 44.7 bits (104),  Expect = 1e-04
 Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
 Frame = -2

Query  416  LYVKNIPDNTSTEKLKEVFQRHGEVIKVVMPPGKA-GK-RDFGFIHYAERSSALKAVKDT  243
            L+V  I   TS E LK+ F R+G V++ V+   K  GK R FGF+ +A     +KA++DT
Sbjct  8    LFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRDT  67


>gi|15217975|ref|NP_176143.1|  ATRBP1 (RNA-BINDING PROTEIN 1); RNA binding [Arabidopsis thaliana]
 gi|12321044|gb|AAG50640.1|AC082643_4  RNA binding protein [Arabidopsis thaliana]
 gi|15450912|gb|AAK96727.1|  RNA binding protein [Arabidopsis thaliana]
 gi|17978725|gb|AAL47356.1|  RNA binding protein [Arabidopsis thaliana]
 gi|18181938|dbj|BAB83876.1|  RNA binding protein [Arabidopsis thaliana]
Length=360

 Score = 50.8 bits (120),  Expect = 2e-06
 Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 11/137 (8%)
 Frame = -2

Query  443  HSAASQVKALYVKNIPDNTSTEKLKEVFQRHGEVIK-VVMPPGKAGK-RDFGFIHYAERS  270
            +   S+ K ++V  +  NT+ E+ K  F+R G     VVM  G   + R FGF+ Y +  
Sbjct  113  NGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTY-DSE  171

Query  269  SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTDAAYPYSAGLHPNQLSHPGYGGFTGAPY  90
             +++ V  +  +E+  + +EV  A P+   +++     +          P Y  F   PY
Sbjct  172  DSVEVVMQSNFHELSDKRVEVKRAIPKEGIQSNNGNAVNI--------PPSYSSFQATPY  223

Query  89   ASVSAGFGVATSFQQPV  39
                 G+G+   F  PV
Sbjct  224  VPEQNGYGMVLQFPPPV  240


 Score = 44.7 bits (104),  Expect = 1e-04
 Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
 Frame = -2

Query  416  LYVKNIPDNTSTEKLKEVFQRHGEVIKVVMPPGKA-GK-RDFGFIHYAERSSALKAVKDT  243
            L+V  I   TS E LK+ F R+G V++ V+   K  GK R FGF+ +A     +KA++DT
Sbjct  8    LFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRDT  67


>gi|15227815|ref|NP_179916.1|  PAB4; RNA binding / translation initiation factor [Arabidopsis 
thaliana]
 gi|2642429|gb|AAB87097.1|  putative poly(A) binding protein [Arabidopsis thaliana]
 gi|15292851|gb|AAK92796.1|  putative poly(A) binding protein [Arabidopsis thaliana]
 gi|19310779|gb|AAL85120.1|  putative poly(A) binding protein [Arabidopsis thaliana]
Length=662

 Score = 50.4 bits (119),  Expect = 2e-06
 Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 13/136 (9%)
 Frame = -2

Query  416  LYVKNIPDNTSTEKLKEVFQRHGEV--IKVVMPPGKAGKRDFGFIHYAERSSALKAVKDT  243
            LYVKN+ D  + EKL+E+F   G +   KV+  P    K   GF+ ++  S A + + + 
Sbjct  330  LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGS-GFVAFSAASEASRVLNEM  388

Query  242  EKYEIDGQVLEVVLAKPQTDKKTDAAYPYSAGLHPNQLSHPGYGGFTGAPYASVSAGFGV  63
                + G+ L V LA+ + +++      +S  + P  +  PG G     P   +    G 
Sbjct  389  NGKMVGGKPLYVALAQRKEERRAKLQAQFSQ-MRPAFI--PGVG-----PRMPIFT--GG  438

Query  62   ATSFQQPVIYGRGPMP  15
            A    Q + YG+GP P
Sbjct  439  APGLGQQIFYGQGPPP  454


 Score = 47.0 bits (110),  Expect = 3e-05
 Identities = 29/101 (28%), Positives = 55/101 (54%), Gaps = 3/101 (2%)
 Frame = -2

Query  440  SAASQVKA--LYVKNIPDNTSTEKLKEVFQRHGEVIK-VVMPPGKAGKRDFGFIHYAERS  270
            SAA ++K   +YVKN+ + T+ ++LK  F ++G +   VVM  G    R FGF+++    
Sbjct  217  SAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPE  276

Query  269  SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTDAAYPYSAG  147
             A +AV+     + D +   V  A+ +++++ + +  Y  G
Sbjct  277  DAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQG  317


>gi|13430610|gb|AAK25927.1|AF360217_1  putative poly(A) binding protein [Arabidopsis thaliana]
Length=662

 Score = 50.4 bits (119),  Expect = 2e-06
 Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 13/136 (9%)
 Frame = -2

Query  416  LYVKNIPDNTSTEKLKEVFQRHGEV--IKVVMPPGKAGKRDFGFIHYAERSSALKAVKDT  243
            LYVKN+ D  + EKL+E+F   G +   KV+  P    K   GF+ ++  S A + + + 
Sbjct  330  LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGS-GFVAFSAASEASRVLNEM  388

Query  242  EKYEIDGQVLEVVLAKPQTDKKTDAAYPYSAGLHPNQLSHPGYGGFTGAPYASVSAGFGV  63
                + G+ L V LA+ + +++      +S  + P  +  PG G     P   +    G 
Sbjct  389  NGKMVGGKPLYVALAQRKEERRAKLQAQFSQ-MRPAFI--PGVG-----PRMPIFT--GG  438

Query  62   ATSFQQPVIYGRGPMP  15
            A    Q + YG+GP P
Sbjct  439  APGLGQQIFYGQGPPP  454


 Score = 47.0 bits (110),  Expect = 3e-05
 Identities = 29/101 (28%), Positives = 55/101 (54%), Gaps = 3/101 (2%)
 Frame = -2

Query  440  SAASQVKA--LYVKNIPDNTSTEKLKEVFQRHGEVIK-VVMPPGKAGKRDFGFIHYAERS  270
            SAA ++K   +YVKN+ + T+ ++LK  F ++G +   VVM  G    R FGF+++    
Sbjct  217  SAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPE  276

Query  269  SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTDAAYPYSAG  147
             A +AV+     + D +   V  A+ +++++ + +  Y  G
Sbjct  277  DAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQG  317


>gi|7673355|gb|AAF66823.1|AF190655_1  poly(A)-binding protein [Nicotiana tabacum]
Length=649

 Score = 50.4 bits (119),  Expect = 2e-06
 Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 20/159 (12%)
 Frame = -2

Query  431  SQVKALYVKNIPDNTSTEKLKEVFQRHGEV--IKVVMPPGKAGKRDFGFIHYAERSSALK  258
            SQ   LY+KN+ D+ S EKLKE+F  +G +   KV+  P    K   GF+ ++    A +
Sbjct  306  SQGLNLYIKNLDDSISDEKLKELFSPYGTITSCKVMRDPSGVSKGS-GFVAFSNPEEASR  364

Query  257  AVKDTEKYEIDGQVLEVVLAKPQTDKKTDAAYPYS--------AGLHPNQLSHP------  120
            A+ +     +  + L V LA+ + +++      +S        + + P    +P      
Sbjct  365  ALSEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPIAMASSVAPRMPMYPPGGPGL  424

Query  119  GYGGFTGAPYASV---SAGFGVATSFQQPVIYGRGPMPS  12
            G   F G P  ++    AGFG        +  G GPMP+
Sbjct  425  GQQIFYGQPQPAMLPPQAGFGYQQQLVPGMRPGGGPMPN  463
Distribution of 151 Blast Hits on the Query Sequence
