Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168928681-18664-120282344319.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig80 Length=228
Score E Sequences producing significant alignments: (Bits) Value gi|92877732|gb|ABE84719.1| Helicase, C-terminal [Medicago trunca 141 8e-34 gi|92877736|gb|ABE84723.1| Helicase, C-terminal [Medicago trunca 141 8e-34 gi|115459616|ref|NP_001053408.1| Os04g0533000 [Oryza sativa (... 140 2e-33 gi|92877733|gb|ABE84720.1| Helicase, C-terminal [Medicago trunca 139 3e-33 gi|49388093|dbj|BAD25226.1| putative RNA helicase [Oryza sativa 138 5e-33 gi|115447545|ref|NP_001047552.1| Os02g0641800 [Oryza sativa (... 138 5e-33 gi|22328183|ref|NP_191975.2| ATP binding / ATP-dependent heli... 138 7e-33 gi|3775993|emb|CAA09199.1| RNA helicase [Arabidopsis thaliana] 138 7e-33 gi|110289358|gb|ABG66172.1| ATP-dependent RNA helicase ste13,... 132 5e-31 gi|110289359|gb|ABG66173.1| ATP-dependent RNA helicase ste13,... 132 5e-31 gi|62733592|gb|AAX95709.1| DEAD/DEAH box helicase, putative [... 132 5e-31 gi|115482814|ref|NP_001065000.1| Os10g0503700 [Oryza sativa (... 132 5e-31 gi|15225898|ref|NP_182105.1| ATP binding / ATP-dependent heli... 129 2e-30 gi|14532476|gb|AAK63966.1| At2g45810/F4I18.21 [Arabidopsis th... 129 2e-30 gi|15233064|ref|NP_191683.1| ATP binding / ATP-dependent heli... 129 4e-30 gi|3776001|emb|CAA09203.1| RNA helicase [Arabidopsis thaliana] 129 4e-30 gi|116058281|emb|CAL53470.1| Predicted ATP-dependent RNA heli... 123 2e-28 gi|3047117|gb|AAC13628.1| similar to ATP-dependent RNA helica... 108 4e-24 gi|46389757|dbj|BAD15109.1| hypothetical protein [Nicotiana taba 66.2 3e-11 gi|75318355|sp|O49289|RH29_ARATH Putative DEAD-box ATP-depend... 65.5 6e-11 gi|15223812|ref|NP_177830.1| ATP binding / ATP-dependent heli... 65.5 6e-11 gi|115468378|ref|NP_001057788.1| Os06g0535100 [Oryza sativa (... 62.0 6e-10 gi|115438621|ref|NP_001043590.1| Os01g0618400 [Oryza sativa (... 62.0 6e-10 gi|53792028|dbj|BAD54613.1| putative myc-regulated DEAD/H box... 62.0 6e-10 gi|115456005|ref|NP_001051603.1| Os03g0802700 [Oryza sativa (... 61.2 1e-09 gi|92868209|gb|ABE78291.1| Helicase, C-terminal [Medicago trunca 60.8 1e-09 gi|25809056|gb|AAN74636.1| DEAD box RNA helicase [Pisum sativum] 60.5 2e-09 gi|115473749|ref|NP_001060473.1| Os07g0647900 [Oryza sativa (... 60.1 2e-09 gi|25809054|gb|AAN74635.1| DEAD box RNA helicase [Pisum sativ... 59.3 4e-09 gi|92872732|gb|ABE81297.1| Helicase, C-terminal [Medicago tru... 58.9 5e-09 gi|84322402|gb|ABC55720.1| putative RH2 protein [Zea mays] 58.9 5e-09 gi|15219185|ref|NP_173078.1| ATP binding / ATP-dependent heli... 58.9 5e-09 gi|115438623|ref|NP_001043591.1| Os01g0618500 [Oryza sativa (... 58.5 7e-09 gi|54290855|dbj|BAD61516.1| myc-regulated DEAD/H box 18 RNA h... 58.5 7e-09 gi|38564733|gb|AAR23806.1| initiation factor eIF4A-15 [Helianthu 58.5 7e-09 gi|15230945|ref|NP_188610.1| ATP binding / ATP-dependent heli... 58.5 7e-09 gi|115473551|ref|NP_001060374.1| Os07g0633500 [Oryza sativa (... 58.5 7e-09 gi|15229677|ref|NP_188490.1| ATP binding / ATP-dependent heli... 58.5 7e-09 gi|3775985|emb|CAA09195.1| RNA helicase [Arabidopsis thaliana... 58.5 7e-09 gi|2500516|sp|Q40470|IF4A7_TOBAC Eukaryotic initiation factor... 58.5 7e-09 gi|2500517|sp|Q40471|IF4A9_TOBAC Eukaryotic initiation factor... 58.5 7e-09 gi|1170506|sp|P41379|IF4A2_NICPL Eukaryotic initiation factor... 58.5 7e-09 gi|1170511|sp|P41382|IF410_TOBAC Eukaryotic initiation factor... 58.5 7e-09 gi|2500519|sp|Q40466|IF413_TOBAC Eukaryotic initiation factor... 58.5 7e-09 gi|2500520|sp|Q40467|IF414_TOBAC Eukaryotic initiation factor... 58.5 7e-09 gi|115476424|ref|NP_001061808.1| Os08g0416100 [Oryza sativa (... 58.2 9e-09 gi|51449873|gb|AAU01909.1| putative ATP-dependent RNA helicas... 58.2 9e-09 gi|52077088|dbj|BAD46119.1| putative RNA helicase [Oryza sati... 58.2 9e-09 gi|37573051|dbj|BAC98579.1| putative ATP-dependent RNA-helica... 58.2 9e-09 gi|15240418|ref|NP_200302.1| ATP binding / ATP-dependent heli... 58.2 9e-09 gi|2500518|sp|Q40465|IF411_TOBAC Eukaryotic initiation factor... 58.2 9e-09 gi|115488568|ref|NP_001066771.1| Os12g0481100 [Oryza sativa (... 57.8 1e-08 gi|14594802|emb|CAC43286.1| translation initiation factor eIF-4A 57.8 1e-08 gi|18419627|gb|AAL69381.1|AF462218_1 putative DEAD/DEAH box heli 57.8 1e-08 gi|19698881|gb|AAL91176.1| eukaryotic translation initiation fac 57.8 1e-08 gi|21555870|gb|AAM63951.1| Eukaryotic initiation factor 4A, p... 57.8 1e-08 gi|2286151|gb|AAB64289.1| translation initiation factor [Zea may 57.8 1e-08 gi|6635383|gb|AAF19805.1| EIF4A protein [Brassica oleracea] 57.8 1e-08 gi|2341061|gb|AAB67607.1| translational initiation factor eIF-4A 57.8 1e-08 gi|79313227|ref|NP_001030693.1| EIF4A1; ATP-dependent helicase [ 57.8 1e-08 gi|77555691|gb|ABA98487.1| DEAD/DEAH box helicase family prot... 57.8 1e-08 gi|63139086|gb|AAY33860.1| eukaryotic initiation factor 4A [Penn 57.8 1e-08 gi|2500522|sp|Q41741|IF4A_MAIZE Eukaryotic initiation factor ... 57.8 1e-08 gi|1170508|sp|P41381|IF4A8_TOBAC Eukaryotic initiation factor... 57.8 1e-08 gi|1170509|sp|P41378|IF4A_WHEAT Eukaryotic initiation factor ... 57.8 1e-08 gi|1170507|sp|P41380|IF4A3_NICPL Eukaryotic initiation factor... 57.8 1e-08 gi|18400210|ref|NP_566469.1| EIF4A1; ATP-dependent helicase [... 57.8 1e-08 gi|115469764|ref|NP_001058481.1| Os06g0701100 [Oryza sativa (... 57.4 2e-08 gi|303844|dbj|BAA02152.1| eukaryotic initiation factor 4A [Or... 57.4 2e-08 gi|116060920|emb|CAL57398.1| ATP-dependent RNA helicase (ISS) [O 57.0 2e-08 gi|3776025|emb|CAA09213.1| RNA helicase [Arabidopsis thaliana] 57.0 2e-08 gi|3097266|emb|CAA76677.1| translation initiation factor [Pisum 57.0 2e-08 gi|15082008|gb|AAK83983.1|AF393811_1 eukaryotic initiation fa... 57.0 2e-08 gi|115453811|ref|NP_001050506.1| Os03g0566800 [Oryza sativa (... 57.0 2e-08 gi|30682500|ref|NP_196478.2| ATP binding / ATP-dependent heli... 57.0 2e-08 gi|115444197|ref|NP_001045878.1| Os02g0146600 [Oryza sativa (... 57.0 2e-08 gi|12381896|dbj|BAB21258.1| eukaryotic initiation factor 4A [... 57.0 2e-08 gi|9759355|dbj|BAB10010.1| RNA helicase-like protein [Arabidopsi 57.0 2e-08 gi|30683736|ref|NP_193396.3| ATP binding / ATP-dependent heli... 56.6 3e-08 gi|12325365|gb|AAG52624.1|AC024261_11 photosystem II protein ... 56.6 3e-08 gi|15223841|ref|NP_175549.1| ATP binding / ATP-dependent heli... 56.6 3e-08 gi|116060682|emb|CAL57160.1| ATP-dependent RNA helicase (ISS) [O 56.2 3e-08 gi|110740927|dbj|BAE98559.1| eukaryotic protein synthesis ini... 56.2 3e-08 gi|15242323|ref|NP_196479.1| ATP binding / ATP-dependent heli... 56.2 3e-08 gi|15227951|ref|NP_181780.1| ATP binding / ATP-dependent heli... 55.8 4e-08 gi|3776021|emb|CAA09211.1| RNA helicase [Arabidopsis thaliana] 55.8 4e-08 gi|15218574|ref|NP_177417.1| ATP binding / ATP-dependent heli... 55.8 4e-08 gi|15215678|gb|AAK91384.1| AT3g19760/MMB12_21 [Arabidopsis th... 55.8 4e-08 gi|115438787|ref|NP_001043673.1| Os01g0639100 [Oryza sativa (... 55.8 4e-08 gi|2500521|sp|Q40468|IF415_TOBAC Eukaryotic initiation factor... 55.8 4e-08 gi|28393424|gb|AAO42134.1| putative DEAD/DEAH box RNA helicase [ 55.5 6e-08 gi|15221761|ref|NP_175829.1| EIF4A-2; ATP-dependent helicase ... 55.5 6e-08 gi|15239187|ref|NP_201391.1| ATP binding / ATP-dependent heli... 55.1 7e-08 gi|109893656|sp|Q9FFQ1|RH31_ARATH DEAD-box ATP-dependent RNA hel 54.7 1e-07 gi|84468282|dbj|BAE71224.1| putative replication protein A1 [Tri 54.7 1e-07 gi|15242854|ref|NP_201168.1| ATP binding / ATP-dependent heli... 54.7 1e-07 gi|14334882|gb|AAK59619.1| putative RNA helicase [Arabidopsis th 54.3 1e-07 gi|42572227|ref|NP_974208.1| ATP binding / ATP-dependent heli... 54.3 1e-07 gi|30678477|ref|NP_850499.1| ATP binding / ATP-dependent heli... 54.3 1e-07 gi|116058195|emb|CAL53384.1| Predicted ATP-dependent RNA heli... 53.9 2e-07
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 121 Number of extensions: 0 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 228 Length of database: 101054579 Length adjustment: 47 Effective length of query: 181 Effective length of database: 87737176 Effective search space: 2544378104 Effective search space used: 2544378104 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 61 (28.1 bits)