RID=1168929016-11919-77666296629.BLASTQ1, Contig97

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168929016-11919-77666296629.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig97
Length=323

Distribution of 16 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|26986114|emb|CAD29821.2|  putative photosystem I reaction c...  43.1    3e-04
gi|2499967|sp|Q41229|PSAEB_NICSY  Photosystem I reaction cente...  38.5    0.007
gi|115471805|ref|NP_001059501.1|  Os07g0435300 [Oryza sativa (...  35.0    0.078 
gi|34394725|dbj|BAC84088.1|  putative Photosystem I reaction c...  35.0    0.078 
gi|2499966|sp|Q41228|PSAEA_NICSY  Photosystem I reaction cente...  35.0    0.078
gi|92889608|gb|ABE89946.1|  Photosystem I reaction centre subu...  34.7    0.10 
gi|21555308|gb|AAM63830.1|  Photosystem I reaction center subu...  34.3    0.13  
gi|15225331|ref|NP_179616.1|  unknown protein [Arabidopsis tha...  34.3    0.13  
gi|50261901|gb|AAT72503.1|  AT4G28750 [Arabidopsis lyrata subsp.   33.5    0.23 
gi|22091414|gb|AAG41443.2|AF326861_1  putative photosystem I subu  33.5    0.23  
gi|11692884|gb|AAG40045.1|AF324694_1  AT4g28750 [Arabidopsis thal  33.5    0.23  
gi|24030202|gb|AAN41281.1|  putative photosystem I subunit PSI...  33.5    0.23  
gi|131176|sp|P13194|PSAE_HORVU  Photosystem I reaction center ...  33.5    0.23  
gi|30688100|ref|NP_567818.2|  PSAE1 (PSA E1 KNOCKOUT) [Arabido...  33.5    0.23  
gi|1217601|dbj|BAA07667.1|  PSI-E subunit of photosystem I [Nicot  32.7    0.39 
gi|131178|sp|P12354|PSAE_SPIOL  Photosystem I reaction center ...  30.4    1.9

Alignments

 

>gi|26986114|emb|CAD29821.2|  putative photosystem I reaction centre subunit IV [Populus x 
canadensis]
Length=140

 Score = 43.1 bits (100),  Expect = 3e-04
 Identities = 47/83 (56%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
 Frame = +1

Query  76   GFLLTPNVTGNASSASKTSMAFFPsknsnnnsnssRLVVRaaeeaaapapatttappeap  255
            GF LTP V  N +S SK +M FF SKN+N N +  RLVVR+AEE A+P  ATT       
Sbjct  12   GFALTPAVATNTNSTSKPTMLFFSSKNNNKNYS--RLVVRSAEEGASPPAATTEPAVAEA  69

Query  256  kpkpap-IGPKRGTKVKILRRES  321
                 P IGPKRGTKVKILR+ES
Sbjct  70   PKPKPPPIGPKRGTKVKILRKES  92


>gi|2499967|sp|Q41229|PSAEB_NICSY  Photosystem I reaction center subunit IV B, chloroplast precursor 
(PSI-E B) [Contains: Photosystem I reaction center subunit 
IV B isoform 2]
 gi|632724|gb|AAB31705.1|  photosystem I subunit PSI-E [Nicotiana sylvestris]
Length=143

 Score = 38.5 bits (88),  Expect = 0.007
 Identities = 43/85 (50%), Positives = 55/85 (64%), Gaps = 4/85 (4%)
 Frame = +1

Query  76   GFLL-TPNVTGNASSASKTSMAFFPsknsnnnsnssRLVVRaaeeaaapapatttappea  252
            GF++ TPN+   +++A +TSM FF S  +N  +N  RLVVRAAEEAA PA   T      
Sbjct  12   GFMVATPNIA-TSNTAPRTSMLFFSSSKNNTTTNFPRLVVRAAEEAAPPAATATAEGEAP  70

Query  253  pkpkpap--IGPKRGTKVKILRRES  321
            P     P  IGPKRGTKV++LR+ES
Sbjct  71   PAKAAKPPPIGPKRGTKVRVLRKES  95


>gi|115471805|ref|NP_001059501.1|  Os07g0435300 [Oryza sativa (japonica cultivar-group)]
 gi|113611037|dbj|BAF21415.1|  Os07g0435300 [Oryza sativa (japonica cultivar-group)]
Length=79

 Score = 35.0 bits (79),  Expect = 0.078
 Identities = 16/16 (100%), Positives = 16/16 (100%), Gaps = 0/16 (0%)
 Frame = +1

Query  274  IGPKRGTKVKILRRES  321
            IGPKRGTKVKILRRES
Sbjct  16   IGPKRGTKVKILRRES  31


>gi|34394725|dbj|BAC84088.1|  putative Photosystem I reaction center subunit IV [Oryza sativa 
(japonica cultivar-group)]
Length=149

 Score = 35.0 bits (79),  Expect = 0.078
 Identities = 16/16 (100%), Positives = 16/16 (100%), Gaps = 0/16 (0%)
 Frame = +1

Query  274  IGPKRGTKVKILRRES  321
            IGPKRGTKVKILRRES
Sbjct  86   IGPKRGTKVKILRRES  101


>gi|2499966|sp|Q41228|PSAEA_NICSY  Photosystem I reaction center subunit IV A, chloroplast precursor 
(PSI-E A) [Contains: Photosystem I reaction center subunit 
IV A isoform 2]
 gi|632722|gb|AAB31704.1|  photosystem I subunit PSI-E [Nicotiana sylvestris]
Length=141

 Score = 35.0 bits (79),  Expect = 0.078
 Identities = 47/80 (58%), Positives = 55/80 (68%), Gaps = 5/80 (6%)
 Frame = +1

Query  88   TPNVTGNASSASKTSMAFFPsknsnnnsnssRLVVRaaeeaaapapatttappeapkpkp  267
            TPNV  N ++ S+T+M FF SKN  + +   RLVVRAAEEAA PA A T  P EAP    
Sbjct  17   TPNVASNTNT-SRTTMLFFSSKNYGSTAP--RLVVRAAEEAAPPAAAATAEPAEAPVKAA  73

Query  268  ap--IGPKRGTKVKILRRES  321
             P  IGPKRGTKV+ILR+ES
Sbjct  74   KPPPIGPKRGTKVRILRKES  93


>gi|92889608|gb|ABE89946.1|  Photosystem I reaction centre subunit IV/PsaE [Medicago truncatula]
Length=138

 Score = 34.7 bits (78),  Expect = 0.10
 Identities = 39/86 (45%), Positives = 54/86 (62%), Gaps = 11/86 (12%)
 Frame = +1

Query  76   GFLLTPN-VTGNASS---ASKTSMAFFPsknsnnnsnssRLVVRaaeeaaapapatttap  243
            GF+L+PN V+GN ++    S+ +M  +P+  + N+    RLVVRA+EEAAA       A 
Sbjct  12   GFVLSPNNVSGNTNTNLLVSRMNMVMYPTTRNTNS----RLVVRASEEAAATPTVEGEAA  67

Query  244  peapkpkpapIGPKRGTKVKILRRES  321
            P+   P    IGPKRG KVK+LR+ES
Sbjct  68   PKTKPPP---IGPKRGAKVKVLRKES  90


>gi|21555308|gb|AAM63830.1|  Photosystem I reaction center subunit IV B, chloroplast precursor 
(PSI-E B) [Arabidopsis thaliana]
Length=143

 Score = 34.3 bits (77),  Expect = 0.13
 Identities = 36/94 (38%), Positives = 49/94 (52%), Gaps = 17/94 (18%)
 Frame = +1

Query  76   GFLLTPNVT---GNASSASKTSMAFFPsknsnnnsnssRLVVRaaeeaaapapatttapp  246
            GF+LT NV    G  SS S T ++F P ++  +     RLVVRAAE+      ++ ++  
Sbjct  7    GFILTANVPAAIGGGSSKSTTIVSFLPMRSFGS-----RLVVRAAEDTPPATASSDSSST  61

Query  247  eapkpkpap---------IGPKRGTKVKILRRES  321
             A                IGPKRG+KVKILR+ES
Sbjct  62   TAAAAPAKVPAAKAKPPPIGPKRGSKVKILRKES  95


>gi|15225331|ref|NP_179616.1|  unknown protein [Arabidopsis thaliana]
 gi|17433302|sp|Q9S714|PSAE2_ARATH  Photosystem I reaction center subunit IV B, chloroplast precursor 
(PSI-E B)
 gi|4512709|gb|AAD21762.1|  putative photosystem I reaction center subunit IV [Arabidopsis 
thaliana]
 gi|5732205|emb|CAB52679.1|  photosystem I subunit IV precursor [Arabidopsis thaliana]
 gi|14596071|gb|AAK68763.1|  putative photosystem I reaction center subunit IV [Arabidopsis 
thaliana]
 gi|27311869|gb|AAO00900.1|  putative photosystem I reaction center subunit IV [Arabidopsis 
thaliana]
Length=145

 Score = 34.3 bits (77),  Expect = 0.13
 Identities = 36/94 (38%), Positives = 49/94 (52%), Gaps = 17/94 (18%)
 Frame = +1

Query  76   GFLLTPNVT---GNASSASKTSMAFFPsknsnnnsnssRLVVRaaeeaaapapatttapp  246
            GF+LT NV    G  SS S T ++F P ++  +     RLVVRAAE+      ++ ++  
Sbjct  9    GFILTANVPAAIGGGSSKSTTIVSFLPMRSFGS-----RLVVRAAEDTPPATASSDSSST  63

Query  247  eapkpkpap---------IGPKRGTKVKILRRES  321
             A                IGPKRG+KVKILR+ES
Sbjct  64   TAAAAPAKVPAAKAKPPPIGPKRGSKVKILRKES  97


>gi|50261901|gb|AAT72503.1|  AT4G28750 [Arabidopsis lyrata subsp. petraea]
Length=96

 Score = 33.5 bits (75),  Expect = 0.23
 Identities = 15/16 (93%), Positives = 16/16 (100%), Gaps = 0/16 (0%)
 Frame = +1

Query  274  IGPKRGTKVKILRRES  321
            IGPKRG+KVKILRRES
Sbjct  32   IGPKRGSKVKILRRES  47


>gi|22091414|gb|AAG41443.2|AF326861_1  putative photosystem I subunit PSI-E [Arabidopsis thaliana]
Length=115

 Score = 33.5 bits (75),  Expect = 0.23
 Identities = 15/16 (93%), Positives = 16/16 (100%), Gaps = 0/16 (0%)
 Frame = +1

Query  274  IGPKRGTKVKILRRES  321
            IGPKRG+KVKILRRES
Sbjct  51   IGPKRGSKVKILRRES  66


>gi|11692884|gb|AAG40045.1|AF324694_1  AT4g28750 [Arabidopsis thaliana]
Length=110

 Score = 33.5 bits (75),  Expect = 0.23
 Identities = 15/16 (93%), Positives = 16/16 (100%), Gaps = 0/16 (0%)
 Frame = +1

Query  274  IGPKRGTKVKILRRES  321
            IGPKRG+KVKILRRES
Sbjct  46   IGPKRGSKVKILRRES  61


>gi|24030202|gb|AAN41281.1|  putative photosystem I subunit PSI-E protein [Arabidopsis thaliana]
Length=141

 Score = 33.5 bits (75),  Expect = 0.23
 Identities = 15/16 (93%), Positives = 16/16 (100%), Gaps = 0/16 (0%)
 Frame = +1

Query  274  IGPKRGTKVKILRRES  321
            IGPKRG+KVKILRRES
Sbjct  77   IGPKRGSKVKILRRES  92


>gi|131176|sp|P13194|PSAE_HORVU  Photosystem I reaction center subunit IV, chloroplast precursor 
(PSI-E) (Photosystem I 10.8 kDa polypeptide)
 gi|19087|emb|CAA68782.1|  unnamed protein product [Hordeum vulgare]
 gi|226163|prf||1413233A  10.8kD photosystem I protein
Length=147

 Score = 33.5 bits (75),  Expect = 0.23
 Identities = 15/15 (100%), Positives = 15/15 (100%), Gaps = 0/15 (0%)
 Frame = +1

Query  277  GPKRGTKVKILRRES  321
            GPKRGTKVKILRRES
Sbjct  84   GPKRGTKVKILRRES  98


>gi|30688100|ref|NP_567818.2|  PSAE1 (PSA E1 KNOCKOUT) [Arabidopsis thaliana]
 gi|18203441|sp|Q9S831|PSAE1_ARATH  Photosystem I reaction center subunit IV A, chloroplast precursor 
(PSI-E A)
 gi|4218123|emb|CAA22977.1|  photosystem I subunit PSI-E-like protein [Arabidopsis thaliana]
 gi|5732203|emb|CAB52678.1|  photosystem I subunit IV precursor [Arabidopsis thaliana]
 gi|7269730|emb|CAB81463.1|  photosystem I subunit PSI-E-like protein [Arabidopsis thaliana]
 gi|14596005|gb|AAK68730.1|  Unknown protein [Arabidopsis thaliana]
 gi|20148717|gb|AAM10249.1|  unknown protein [Arabidopsis thaliana]
Length=143

 Score = 33.5 bits (75),  Expect = 0.23
 Identities = 15/16 (93%), Positives = 16/16 (100%), Gaps = 0/16 (0%)
 Frame = +1

Query  274  IGPKRGTKVKILRRES  321
            IGPKRG+KVKILRRES
Sbjct  79   IGPKRGSKVKILRRES  94


>gi|1217601|dbj|BAA07667.1|  PSI-E subunit of photosystem I [Nicotiana sylvestris]
Length=147

 Score = 32.7 bits (73),  Expect = 0.39
 Identities = 43/89 (48%), Positives = 55/89 (61%), Gaps = 8/89 (8%)
 Frame = +1

Query  76   GFLL-TPNVTGNASSASKTSMAFFPsknsnnnsnssRLVVRaaeeaaapapatttappea  252
            GF++ TPN+   +++A +TSM FF S  +N  +N  RLVVRAAEEAA PA   T      
Sbjct  12   GFMVATPNIA-TSNTAPRTSMLFFSSSKNNTTTNFPRLVVRAAEEAAPPAATATAEGEAP  70

Query  253  pkpkpap--IGPKRGTK----VKILRRES  321
            P     P  IGPKRGTK    V++LR+ES
Sbjct  71   PAKAAKPPPIGPKRGTKVSTPVRVLRKES  99


>gi|131178|sp|P12354|PSAE_SPIOL  Photosystem I reaction center subunit IV, chloroplast precursor 
(PSI-E)
 gi|21295|emb|CAA32183.1|  unnamed protein product [Spinacia oleracea]
Length=125

 Score = 30.4 bits (67),  Expect = 1.9
 Identities = 12/16 (75%), Positives = 16/16 (100%), Gaps = 0/16 (0%)
 Frame = +1

Query  274  IGPKRGTKVKILRRES  321
            IGPKRG+KV+I+R+ES
Sbjct  62   IGPKRGSKVRIMRKES  77

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 148
Number of extensions: 3
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 323
Length of database: 101054579
Length adjustment: 76
Effective length of query: 247
Effective length of database: 79520055
Effective search space: 2465121705
Effective search space used: 2465121705
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 61 (28.1 bits)