Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168929055-10181-95256573005.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig99 Length=691
Score E Sequences producing significant alignments: (Bits) Value gi|18417320|ref|NP_567820.1| EMB2726; RNA binding / structura... 217 2e-85 gi|110740886|dbj|BAE98539.1| hypothetical protein [Arabidopsis t 217 2e-85 gi|115488938|ref|NP_001066956.1| Os12g0541500 [Oryza sativa (... 205 2e-82 gi|53794015|gb|AAU93598.1| chloroplast polyprotein of elongat... 145 2e-57 gi|53794021|gb|AAU93601.1| chloroplast polyprotein of elongat... 152 1e-36 gi|79325369|ref|NP_001031743.1| EMB2726; RNA binding / struct... 150 4e-36 gi|110741951|dbj|BAE98916.1| hypothetical protein [Arabidopsis t 100 4e-21 gi|5669636|gb|AAD46403.1|AF096247_1 ethylene-responsive elong... 71.6 3e-12 gi|42566427|ref|NP_192850.2| translation elongation factor [A... 63.2 9e-10 gi|4850291|emb|CAB43047.1| putative translation elongation fa... 63.2 9e-10 gi|3600047|gb|AAC35534.1| similar to elongation factor EF-Ts [Ar 63.2 9e-10 gi|115476306|ref|NP_001061749.1| Os08g0399600 [Oryza sativa (... 58.2 3e-08 gi|116058525|emb|CAL53714.1| Mitochondrial translation elonga... 57.8 4e-08 gi|53794019|gb|AAU93600.1| chloroplast polyprotein of elongat... 53.5 7e-07 gi|116056980|emb|CAL51407.1| putative histone deacetylase [Or... 48.5 2e-05 gi|15242198|ref|NP_199998.1| unknown protein [Arabidopsis tha... 33.5 0.78 gi|79572991|ref|NP_181670.2| unknown protein [Arabidopsis thalia 32.0 2.3 gi|51970402|dbj|BAD43893.1| unnamed protein product [Arabidopsis 32.0 2.3 gi|11994658|dbj|BAB02886.1| unnamed protein product [Arabidopsis 31.6 3.0 gi|37790792|gb|AAR03498.1| sucrose synthase [Populus tremuloides 31.2 3.9 gi|1946300|emb|CAA73132.1| hypothetical protein [Silene latifoli 31.2 3.9 gi|32487863|emb|CAE05631.1| OSJNBb0061C13.13 [Oryza sativa (j... 31.2 3.9 gi|115440583|ref|NP_001044571.1| Os01g0807400 [Oryza sativa (... 30.0 8.6 gi|95020374|gb|ABF50712.1| sucrose synthase [Populus sp. UG-2006 30.0 8.6
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 472 Number of extensions: 3 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 691 Length of database: 101054579 Length adjustment: 109 Effective length of query: 582 Effective length of database: 70169538 Effective search space: 8490514098 Effective search space used: 8490514098 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 66 (30.0 bits)