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BLASTX 2.2.15 [Oct-15-2006] 
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman 
(1997), "Gapped BLAST and PSI-BLAST: a new generation of 
protein database search programs", Nucleic Acids Res. 25:3389-3402.

RID: 1168924734-26413-145268240020.BLASTQ1


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
           4,458,890 sequences; 1,532,996,420 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs
Taxonomy reports

Query=  Contig3
Length=341

Distribution of 7 Blast Hits on the Query Sequence


                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|87162496|gb|ABD28291.1|  Integrase, catalytic region; Ribon...  29.3    4.3  
gi|87241502|gb|ABD33360.1|  RNA-directed DNA polymerase (Rever...  28.5    7.4  
gi|115473557|ref|NP_001060377.1|  Os07g0634000 [Oryza sativa (...  28.5    7.4   Gene info
gi|92891276|gb|ABE90743.1|  RNase H, putative [Medicago truncatul  28.1    9.6  
gi|92885634|gb|ABE87861.1|  RNA-directed DNA polymerase (Rever...  28.1    9.6  
gi|92874722|gb|ABE82941.1|  RNA-directed DNA polymerase (Rever...  28.1    9.6  
gi|92871183|gb|ABE80272.1|  Integrase, catalytic region; Pepti...  28.1    9.6
Alignments

>gi|87162496|gb|ABD28291.1|  Integrase, catalytic region; Ribonuclease H [Medicago truncatula]
Length=981

 Score = 29.3 bits (64),  Expect = 4.3
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 0/31 (0%)
 Frame = -3

Query  297  ITTLSRLYNVVAISVSPLICVQFLDEPIPIY  205
            + TLS + NV   ++ P+I VQFLD P  ++
Sbjct  526  LATLSSMINVNGHNIVPVINVQFLDRPAYVF  556


>gi|87241502|gb|ABD33360.1|  RNA-directed DNA polymerase (Reverse transcriptase); Peptidase 
aspartic, active site; Ribonuclease H; Retrotransposon gag 
protein; Retrovirus capsid, C-terminal [Medicago truncatula]
Length=2291

 Score = 28.5 bits (62),  Expect = 7.4
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 0/31 (0%)
 Frame = -3

Query  297   ITTLSRLYNVVAISVSPLICVQFLDEPIPIY  205
             + TLS + NV   +  P+I VQFLD P  ++
Sbjct  1836  LATLSSMINVNGHNTVPIINVQFLDRPAYVF  1866


>gi|115473557|ref|NP_001060377.1| Gene info Os07g0634000 [Oryza sativa (japonica cultivar-group)]
 gi|22093829|dbj|BAC07116.1| Gene info hypothetical protein [Oryza sativa (japonica cultivar-group)]
 gi|22296391|dbj|BAC10160.1| Gene info hypothetical protein [Oryza sativa (japonica cultivar-group)]
 gi|113611913|dbj|BAF22291.1| Gene info Os07g0634000 [Oryza sativa (japonica cultivar-group)]
Length=368

 Score = 28.5 bits (62),  Expect = 7.4
 Identities = 13/43 (30%), Positives = 28/43 (65%), Gaps = 5/43 (11%)
 Frame = -3

Query  300  RITTLSRLYNVVAISVSPLICVQFLDEPIPIYPKRSKQLLQKT  172
            R+TT+  +YNV++I+V+ L+ + F      +Y KR+   ++++
Sbjct  296  RLTTVEIVYNVISITVAFLVAIGF-----TVYAKRALDEMERS  333


>gi|92891276|gb|ABE90743.1|  RNase H, putative [Medicago truncatula]
Length=2315

 Score = 28.1 bits (61),  Expect = 9.6
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 0/31 (0%)
 Frame = -3

Query  297   ITTLSRLYNVVAISVSPLICVQFLDEPIPIY  205
             + TLS + NV   +  P+I VQFLD P  ++
Sbjct  1860  LATLSSMINVNGHNTVPVINVQFLDRPAYVF  1890


>gi|92885634|gb|ABE87861.1|  RNA-directed DNA polymerase (Reverse transcriptase); Peptidase 
aspartic, active site; Ribonuclease H; Retrotransposon gag 
protein; Retrovirus capsid, C-terminal [Medicago truncatula]
Length=2309

 Score = 28.1 bits (61),  Expect = 9.6
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 0/31 (0%)
 Frame = -3

Query  297   ITTLSRLYNVVAISVSPLICVQFLDEPIPIY  205
             + TLS + NV   +  P+I VQFLD P  ++
Sbjct  1854  LATLSSMINVNGHNTVPVINVQFLDRPAYVF  1884


>gi|92874722|gb|ABE82941.1|  RNA-directed DNA polymerase (Reverse transcriptase); Integrase, 
catalytic region; Ribonuclease H [Medicago truncatula]
Length=1119

 Score = 28.1 bits (61),  Expect = 9.6
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 0/31 (0%)
 Frame = -3

Query  297  ITTLSRLYNVVAISVSPLICVQFLDEPIPIY  205
            + TLS + NV   +  P+I VQFLD P  ++
Sbjct  702  LATLSSMINVNGHNTVPVINVQFLDRPTYVF  732


>gi|92871183|gb|ABE80272.1|  Integrase, catalytic region; Peptidase aspartic, active site; 
Ribonuclease H [Medicago truncatula]
Length=1682

 Score = 28.1 bits (61),  Expect = 9.6
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 0/31 (0%)
 Frame = -3

Query  297   ITTLSRLYNVVAISVSPLICVQFLDEPIPIY  205
             + TLS + NV   +  P+I VQFLD P  ++
Sbjct  1282  LATLSSMINVNGHNTVPVINVQFLDRPAYVF  1312







  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 291
Number of extensions: 10
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 341
Length of database: 101054579
Length adjustment: 81
Effective length of query: 260
Effective length of database: 78103310
Effective search space: 2499305920
Effective search space used: 2499305920
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 61 (28.1 bits)