cloneSDH0052 ------------------------------------------------------------
cloneSDH0004 ------------------------------------------------------------
cloneSDH0019 ------------------------------------------------------------
cloneSDH0059 ------------------------------------------------------------
cloneSDH0044 ------------------------------------------------------------
cloneSR0020 ------------------------------------------------------------
Candidatus TACAGGACTTGTACAGGCCTGTTTTCTAAGCTTTTAAACCAGCTAAATTGAGTAATCCCC 60
cloneSDH0060 ------------------------------------------------------------
cloneSDH0052 ------------------------------------------------------------
cloneSDH0004 ------------------------------------------------------------
cloneSDH0019 ------------------------------------------------------------
cloneSDH0059 ------------------------------------------------------------
cloneSDH0044 ------------------------------------------------------------
cloneSR0020 ------------------------------------------------------------
Candidatus AAGGTTTGTTGAAATGAGGTTGGGAGAAAAAACCAACAAAAGCTAATTGTTCGACTGTCA 120
cloneSDH0060 ------------------------------------------------------------
cloneSDH0052 ------------------------------------------------------------
cloneSDH0004 ------------------------------------------------------------
cloneSDH0019 ------------------------------------------------------------
cloneSDH0059 ------------------------------------------------------------
cloneSDH0044 ------------------------------------------------------------
cloneSR0020 ------------------------------------------------------------
Candidatus TTTCATTTTGGATGCAAACACTTAAAGTATTTATTTTTTCGGTTAAATCCAAGCGAGAAA 180
cloneSDH0060 ------------------------------------------------------------
cloneSDH0052 ------------------------------------------------------------
cloneSDH0004 ------------------------------------------------------------
cloneSDH0019 ------------------------------------------------------------
cloneSDH0059 ------------------------------------------------------------
cloneSDH0044 ------------------------------------------------------------
cloneSR0020 ------------------------------------------------------------
Candidatus CAATTTGTCCGCCTAAAATCTTGCGAGTATCTTTATCAAAAACAAGTTTTAAAGTCACTG 240
cloneSDH0060 ------------------------------------------------------------
cloneSDH0052 ---------------------------------GACAAAAAAAGACAAGTTTCAAAACCA 27
cloneSDH0004 ------------------------------------------------------------
cloneSDH0019 -------------------------------------------AACCTCAAAAAAATATA 17
cloneSDH0059 ----------------------------------------------------------GA 2
cloneSDH0044 ------------------------------------------------------------
cloneSR0020 ------------------------------------------------------------
Candidatus TTTCAAATTCAGGCATAAATTCCGGTCGATTTGCATCTTTAATGGTAACAACGTCATAGT 300
cloneSDH0060 ------------------------------------------------------------
cloneSDH0052 AAAGTTCTTGATTTGGATCCAGCTTTTGTGAAA-AGCAAA-ACTGGAATTGCCTTTTCGC 85
cloneSDH0004 --------------------------AACCAAA-AGAAAA-A----AATTTATTTTTTGA 28
cloneSDH0019 TAAAACGTAATATAGGAGCAAAATTTTGTGTTTTAGAACT-ATTTTGGTTCCAAATTAAA 76
cloneSDH0059 CAGAAACCCAAGATGAAAAAACCATTATTGCTTTAGAACA-A-------AAAAAATTTGA 54
cloneSDH0044 ---------------------AGTGTTATTTTT-AGCTAA-ATTACATCCCGAAACCAAA 37
cloneSR0020 ----------ACATAATAAAGGATTTTTTCTCTGATGATT-TCAGCCATTAAAAACTCTT 49
Candidatus TTTTACCTGAATCTTTAGCTACTGTTTCTGTCAAACCAGTCGAAGAAATATTTAAATCAA 360
cloneSDH0060 ---------------------------------------------GACAGAACAGCGCAG 15
cloneSDH0052 TTACCCAAACTCAAAACTGGTTATCAAACTTAGATTATCAAGTTTTATC-AACTAAATCA 144
cloneSDH0004 TTGCTCCT-TTTAAGGGTAATGATT--TTTTACAAGATC---CTCTTTT-AAGTGATTTT 81
cloneSDH0019 TAACCAAAATAGTTTAATTATAAAAAAACTACACAAATTGCCCTCCATC-AAAGAGGGTT 135
cloneSDH0059 ATGCTTTTACAACAAAGAATTAAATGTTTTTTATTTATTTGATGCAACCGAAAGAGAAGC 114
cloneSDH0044 --GCTTGCACTTTAAACATTCAACAGGCGCAAACAATTTTGACTATTTCTAAAAAAGTCT 95
cloneSR0020 TTTTTTGGTTAGTGACAGTTTCTTGGGGGTAATAAGG---AACACCTTCTGAAATATTTT 106
Candidatus TAATTTTGATACCACTAGTACCCTGAGTGCCTAAGTATTTGATTTTTTGTTCACTAATGT 420
cloneSDH0060 TTGCTGCCTTACCTTTAAAACAACAAGGCTATGAGGTTGAAGCGGTTTTTATGCGTAATT 75
cloneSDH0052 GATAATTTAAAACTATCTGCCCCTTTGCGTCGATATGATATTAAAATCAAAGAAAATGTT 204
cloneSDH0004 TGTTAAGCGAAA------------TCGGAGAAAAACATTATTTTCACTTACAAAGTCATT 129
cloneSDH0019 TATTATTTAATTTAAT--------TTTTAAGATTTTTATTTTTATATTCCAAAGGTGATA 187
cloneSDH0059 AATTAAGCAATTATTT--------TCCGAAAAAGCTTTGGCGTAAGCTATGATTACTTTT 166
cloneSDH0044 TAAAAACAGCTATCCAA-------TTGGGGGGAACAACCATAAGTACTTATGAGTCGCAA 148
cloneSR0020 GATAAAGATTATCTTTTAATTG--TTGGATGTTTTTGGCATTAAGGGCAGAAAGGGGGAC 164
Candidatus TTAAACCTACTAAAGT--------TCCCATTCGTATAGCATTGGTTGCTAAAGGCATGTA 472
cloneSDH0060 GGGACAGCAATCTTAAT-------TTTGATATCAAAGGTAATCCGACTTTAAACAATGAT 128
*
cloneSDH0052 GTTGCTGATTTAGTTCGTCC--TTATGGTTATCAC-AACGTTATTAACATCAAAACAACT 261
cloneSDH0004 TTTTGCAAACAAATATCAAC--TTAAAAGAACTA--AAAGATGTTAGCAAAAAATTCGAT 185
cloneSDH0019 AATAATTTAAAACTTTCATT--TTGCGATAAATAT-TATAATACC--TAATGTAATCACT 242
cloneSDH0059 GATAATTTAGAAGAGTCATT--AACTCGTTATGATTTATCAGATCAATCTCAAATTCAAG 224
cloneSDH0044 CAAGGAATTCAAGGAACTTT--TCAAAATAGTCTTTTAGTGCACAGCAAACAAAATTATC 206
cloneSR0020 GATAATTTGAAAGGGAAAATGATTTAAATAGCTTAAAATGATAGCATCAATTTGACTTTT 224
Candidatus TTTGACTTCTTGATTGGGAT---TATAATAAACATTAACACAATCGCCACAAGCATAAAC 529
cloneSDH0060 ACTTGTTCACAAGAGTTAGA--TTATAATGACGCTTTA--AAAGTATCTTTACAATTGGG 184
*
cloneSDH0052 AAAAG-CCCACAAGCTCAAATGACTTTA--AAACAAAAAAATATCAGAGAACTGA----- 313
cloneSDH0004 GATA--TCTACCAATTCCAAAAAATTAA--CTTCAATAAAGAATTTAACCAAAAA----- 236
cloneSDH0019 AATAATTTCTTCAATTTGTGAAACATCA--AGTTTTTGCATCTTTTCATAATGGA----- 295
cloneSDH0059 GCGAA-TATTTAAGTGCTT--TGTCTGA--TTTTATCGAACCTTATGAAGGTTATTT--- 276
cloneSDH0044 TTTG----CTTTAATTGTA--AAACTAA--AATTATTAAAATTAAAGTTGGTGGA----- 253
cloneSR0020 GCTTT-TCAAAGAGTCTATTTTGTTAAT--CACTAAAAAAACGGGTTTCTTTTTTTT--- 278
Candidatus ATCAGGGTCAGAAGTTTGCACATATTCGTTAACTACTAAAGCTCCGTTGAAAGAAGTTTT 589
cloneSDH0060 TAT-------CAAATTACATCGCATCGA--TTTTATCGAAGAATACTGGAAAAAA----- 230
* *
cloneSDH0052 AAAAATATTAGTTAATTTAGGTTTTTATGAAACTGTCACTTATAG-TTTAATCAGCGCTG 372
cloneSDH0004 AAATCTATTAGT-AATTTAGGAAAAAGTTTTTCTAAGACTAAT---TTTGATTA----TG 288
cloneSDH0019 TGGTTTCGCGCTTCATGTTGGCCCAAAATGATTCCATACATGCA----TTATCAG--TTG 349
cloneSDH0059 AAAACAGTTAGTTGATGATCGTTTTTTATTGCTTTTGAATCGTC--AAAATTTAGA--TA 332
cloneSDH0044 ---AGAGGCACTTATTTTTGTCCTTCGT--GTCAAAAACATACGC-AATAAACATCAAAT 307
cloneSR0020 GAAAATTAAGGTTAATAAAGGCTTTTCTTTTGGTTGATAAAACGC-GTCTGTGACAAATA 337
Candidatus TAAATCGTTAGCAAATAATTGGGTAT-TTGGTCTAAAACTAATACACATAATTACCATTT 648
cloneSDH0060 --GTCTTTCTGTCTTTTATTGACGCTTTTAGCAACAATCTGACCC---CTAACCCTGATA 285
*
cloneSDH0052 AAATGTTTGAAGCTTT-TAGTTACCAAAAAGAAAGAATC-----AAAATAACGA---ATC 423
cloneSDH0004 AACTGTTTTTAACC---CATTTACCA----GACCGTTTT-----AAAAAACCTT---CTT 333
cloneSDH0019 GCATACCTTTTGCCGAATAGCTAGCAATTAAATTATTTTCTTCTAAACTAGCTTTATACC 409
cloneSDH0059 AAATGTTAGAAAATAA--GTTTAGTATTTTAGATACGGT---CAGAAATATCTC----TC 383
cloneSDH0044 AGACATTTATTAAGAT--ATTTCAAAAGGAGATTAAATTATGTCCGATTGCTTTACTTTG 365
cloneSR0020 AAATCACATCCACATCATTAATACTTTAGAAAGCGATTT-----GATTCATTTT---TTG 389
Candidatus CAGTTTCAAAAGAAGCCTTATCGGTTTTAACATGAGTTA---CTAAATTATCTT--TGAC 703
cloneSDH0060 ATTTACGTAATAAATCGAAATCAAATTTAAAGCTTTTAT-----CGATTATGTG----AC 336
cloneSDH0052 CTTTATCACAAGATAAAGTTATTTTAAGAC-AAAGTTTGTT--AAGTAGTTTAGTCGAG- 479
cloneSDH0004 TGATAGAACAAAAAACAATCGATTTTATCC-AAAAAGTA--------AGTTTAGTTTAT- 383
cloneSDH0019 TTTTAGAAGTATAAACACTTCCTCTATCAC-AATGCATAAC--GCAAGGATTTGTTAATT 466
cloneSDH0059 ACAAATACCAATTAAAAGTCACTCTTTCAA-TGGGAATTGC--TTGTTGGGACATCTCTT 440
cloneSDH0044 TTTAAATAGAAAACCAAATTTCTTTGTCGTTAGAAGACCAT--AAAGCACTCTATTTACT 423
cloneSR0020 ATTCAATAAAAATTTATATTGATTGATTCCTGGGGTATCG---ACAAAAATATATTGAGC 446
Candidatus TTCAAACCCAGCTATTTTTTGTCCTAAAGCTAAGGTAGTGCCATGATTGATTAATTCTTG 763
cloneSDH0060 AGATAAATTAAAACCAGATTGTGTGGCGAT-GGGTCATTAT------GCCGATATTGTC- 388
* * *
cloneSDH0052 ---------GTTT-TAAGTCAGCAA-CACAAAAGACAAGCTTTTGATAATGCTTTTTTTG 528
cloneSDH0004 ---------GATT-TAAAACCTGAA-CAAATAGCAGAAATTT------------------ 414
cloneSDH0019 TAGGCATGTATTT-CAAAGTATCAATCACAAAATCAACATCAGCAATCTTAGAAATGTTA 525
cloneSDH0059 ---------ATGA-TAAACTATCAA-TTTATAGTCAAAATGC---------AATTGAATT 480
cloneSDH0044 ----------TTA-TCAACCATTAA--TTGGGGCCCAAGCTT-------TAGGGTTTTAT 463
cloneSR0020 GTTAGGTTCATGA-CAAATACCTATAATTTTATTACGAGTAG-------TTTGTGGTTTA 498
Candidatus TTGGGCTAAATCAGTAAATTCTTGATCTAAATATTTAGACATGATACGTTGTTCGCCATC 823
cloneSDH0060 ---------ACAAACCAAGACTTGA--CCAAAGCACTAGCTT----------GCGCCTTG 427
*
cloneSDH0052 AGATCAGTAAAGTCT--ATTATCTACAAGAAGA-AAT-ACTAAGTT---TGGGACTT-GC 580
cloneSDH0004 --ATCAAAAAAG-CT--ATC--CTAATCCAAAA-GAT-ATTGATTTA--TCAAAATT-GC 462
cloneSDH0019 AATCCTATAACTTCTCGGTTAAATAAATCTAAA-ATT-ACTGAAATAAATATTTTTT-GT 582
cloneSDH0059 AGCCCAAAAAAGAGGTGGGGATCAGGTTGTAGTTAAT-ATTGAAAACGAAAAAATTAAGT 539
cloneSDH0044 TATATTTTTATGTCTTTAAAACATGATTTTGAA---T-ATGAACATCGATTTCTATT-AG 518
cloneSR0020 TGACTAGTAATAGCTATTTTTTGTTTGATTAAAGCAT-TTAAAAGGGTTGATTTGCCGAC 557
Candidatus GATCAAAACAACTTCTTTTTTTGCAAAGCAAAAGCTTCAGCTAATTCAATGCCGATATAT 883
cloneSDH0060 GATCAAAAAAAAGATCAAACTTATTTTTTATCACAATTAACAACCTCGCAACTACGAAAC 487
* * *
cloneSDH0052 -TTTAAGTGGTA-AATTTTTAAATAGCGGT-TGGT----TAAAACAAGATGTCAATAAAT 633
cloneSDH0004 GTTTAAATGTTA-AA-----AAATATCA---TCAT----AAAAACA--ATATTAATCAGC 507
cloneSDH0019 TTTTTTGGGCCA-AAAGT---AATATAAGTAATAT----CGGTACACAATCTTTCAAAAG 634
cloneSDH0059 ATTTTGGTGCCA-AAAGTGCTTCTTTAAGT--AAG----CAGTCAA--AAGTAAGTGTGC 590
cloneSDH0044 ATCTTGCTGGCG-TTACTACAAATATTT---TTAT----CGAAAATAAAGAAAAATTAGA 570
cloneSR0020 ATTCGGACGCCCTAAAATAGCGATAAAACC-AGAT----TTAAAACTCATATAAAACCTC 612
Candidatus CCAGCGCCAACGACAGTTATTTTTTTCACTTTTTTGCTGTAAGCAATAATTTCTTTGGCA 943
cloneSDH0060 ATCATCTTTCCTTTAGCTAAACTAACCAAACCCGAAGTCAGACAAATCGCTTTAGATAAT 547
cloneSDH0052 CGTTTTTTGTTTTAAAAGGACTGATAGA-AAAAATTAGTACCTTTTTAGGAATTCAACTG 692
cloneSDH0004 AAATTATTGCCTCTAAAAAATT-ACAAG-ACGATGAAGAAGC-----AACAATT--GCTT 558
cloneSDH0019 GAATTATTGCTTGATAATTATTTGGAATTAATTTTTTTCAATTATTTTCTTTTTGAACCG 694
cloneSDH0059 GAGTTAATGCTCAATCTTTAGTTGATCTAATCAAAAATCATTC---TCATTGTTTTATC- 646
cloneSDH0044 AGCTCTTAATTTATTAGCTACTTACCAAAA------------------------------ 600
cloneSR0020 AATTTTCTATTTTTTGACTGCTTAATTTTTTGAAGGTTAATTTTTTTAAAATTTGTTCTT 672
Candidatus TGACTAAAATTTTTAGATAATAAAACGTTTTTACTGTTAATTCCTGGAATCGGTGGAATA 1003
cloneSDH0060 GGCTTGGTT--------------------------------------------------- 556
cloneSDH0052 ACCTTTCAAAAAAGTACTGATAATTCGAATCT-TCATCCAGGCATTCAGGCCAAAATTTT 751
cloneSDH0004 ACTTAAAACAAAGCAACTC----------------------------------------- 577
cloneSDH0019 ATAAATCGTAATAATATTGAGATTTTCGTTGAATCCTTTGTGATAATAAACCAAATTTAT 754
cloneSDH0059 ATGGGTCATCAATACACTGACCTTGATTCTTTAGGTTCTATGATTGC------------- 693
cloneSDH0044 ------------------------------------------------------------
cloneSR0020 GTAAGTAAATCATTTCTTGAAATTCTTCGTCATTGCGGTGTTGATGACCTTTGAGATGTA 732
Candidatus ACAGGCCAAGAACCGGCAGCAATTACTAATTTATCGTAATTATCGGTAAATTCTTTTTTG 1063
cloneSDH0060 ------------------------------------------------------------
cloneSDH0052 ATACAACAACCAAGTTATCGGGATGATAGG------------------------------ 781
cloneSDH0004 ------------------------------------------------------------
cloneSDH0019 ACATCATTTTTAAAACAGTTTTTGGATTAATTTTAAATTTAAGTTCAATTAATTTTTGAT 814
cloneSDH0059 ------------------------------------------------------------
cloneSDH0044 ------------------------------------------------------------
cloneSR0020 AAAACCCATGGACTGCTAAAAAAGCAACTTCCCGCTCTAAACTATGGGCTAATTGCAAAG 792
Candidatus GTTTCTAAATTTTTGACTAAAATTTCTTTTTTGGCAGAATCCACTTTTAAAACTTCATGT 1123
cloneSDH0060 ------------------------------------------------------------
cloneSDH0052 ------------------------------------------------------------
cloneSDH0004 ------------------------------------------------------------
cloneSDH0019 GAAC-------------------------------------------------------- 818
cloneSDH0059 ------------------------------------------------------------
cloneSDH0044 ------------------------------------------------------------
cloneSR0020 CTTGT------------------------------------------------------- 797
Candidatus TTTAATTTCGTGTTAATGCCCATGCTGATTAATTCATCTGGGTTAGAATAAAAAAGACCA 1183
cloneSDH0060 ------------------------------------------------------------
cloneSDH0052 ------------------------------------------------------------
cloneSDH0004 ------------------------------------------------------------
cloneSDH0019 ------------------------------------------------------------
cloneSDH0059 ------------------------------------------------------------
cloneSDH0044 ------------------------------------------------------------
cloneSR0020 ------------------------------------------------------------
Candidatus CGATTGTCTTTAACAACTCCTCCAACATACAAAGCAATCCCACAAGAAAGAAAAGAAATG 1243
cloneSDH0060 ------------------------------------------------------------
cloneSDH0052 ------------------------------------------------------------
cloneSDH0004 ------------------------------------------------------------
cloneSDH0019 ------------------------------------------------------------
cloneSDH0059 ------------------------------------------------------------
cloneSDH0044 ------------------------------------------------------------
cloneSR0020 ------------------------------------------------------------
Candidatus TTGTCATTTCTTTCGTAAACTAAAATATCAGTTTGGGGTTGAAATTTTTTAATAGTTTTT 1303
cloneSDH0060 ------------------------------------------------------------
cloneSDH0052 -----------------------
cloneSDH0004 -----------------------
cloneSDH0019 -----------------------
cloneSDH0059 -----------------------
cloneSDH0044 -----------------------
cloneSR0020 -----------------------
Candidatus GCTGCGGCAGTGCCTGCATGAGT 1326
cloneSDH0060 -----------------------
