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CLUSTAL W Alignment of Phytoplasma associated with Solanaceae family (16 S r RNA seq): |
ColumbiaBasin -----AAGAGTTTGATCCTGGCTCAGGATTAACGCTGGCGGCGTGCCTAATACATGCAAG 55
Washington ------------------------------AACGCTGGCGGCGCGCCTAATACATGCAAG 30
Nebraska ------------------------------AACGCTGGCGGCGCGCCTAATACATGCAAG 30
Texas ------------------------------AACGCTGGCGGCGCGCCTAATACATGCAAG 30
Capsicuum ---------GCGAATTTGGACACTTCAAGTCTGTACGACTCCTCAGAATGGACATGCAAG 51
Petunia ------------------------------------------------------------
Withania ----------------------------------------------------CATGCAAG 8
Potato ATACGAAGAGAATGATCCTGGCTCAGGATTAACGCTGGCCGCGTGCCTAATACATGCAAG 60
Sweet ---------------------------------------GGCGTGCCTAATACATGCAAG 21
Tomato ------------------------------------------------------------
ColumbiaBasin TCGAGCGAAAACCCCTTAAA--AGGTTTTAGTGGCGAACGGGTGAGTAACACGTAAGTAA 113
Washington TCGAACGAAAACCCCTTAAA--AGGTTTTAGTGGCGAACGGGTGAGTAACACGTAAGTAA 88
Nebraska TCGAACGGAAGTTTCTTCGG--AAATTTTAGTGGCGAACGGGTGAGTAACGCGTAAGCAA 88
Texas TCGAACGGAAGTTTCTTCGG--AAATTTTAGTGGCGAACGGGTGAGTAACGCGTAAGCAA 88
Capsicuum TCGAACGGAAGTTAAAGCAATTAAACTTTAGTGGCGAACGGGTGAGTAACGCGTAAGGAA 111
Petunia ------------------------------------------------------------
Withania TCGAACGGAAGTTTAAGCAATTAAACTCTAGTGGCGAACGGGTGAGTAACGCGTAAGCAA 68
Potato TCGAACCCAAGTTTAAGCAATTAAACTTTAGTGGCGAACGGGTGAGTAACGCGTAAGCAA 120
Sweet TCGAACGGAAGTTTAAGTAATTAAACTTTAGTGGCGAACGGGTGAGTAACGCGTAAGCAA 81
Tomato ------------------------------------------------------------
ColumbiaBasin CCTGCCTTTAAGACGAGGATAACAATTGGAAACGGTTGCTAAGACTGGATAGGAAACAAA 173
Washington CCTGCCTTTAAGACGAGGATAACAATTGGAAACGGTTGCTAAGACTGGATAGGAAACAAA 148
Nebraska TCTGCCCCTAAGACGAGGATAACAGTTAGAAATGACTGCTAAGACTGGATAGGAGATAAG 148
Texas TCTGCCCCTAAGACGAGGATAACAGTTAGAAATGACTGCTAAGACTGGATAGGAGATAAG 148
Capsicuum TCTGCCCCTAAGACGAGGATAACAGTTGGAAACGACTGCTAAGACTGGATAGGAGACAAG 171
Petunia ---------------------------TACGACTGCTGCTAAGACTGGATAGGAGACAAG 33
Withania TCTGCCCCTAAGACGAGGATAACAGTTGGAAACGACTGCTAAGACTGGATAGGAGACAAG 128
Potato TCTGCCCCTAAGACGAGGATAACAGTTGGAAACGACTGCTAAGACTGGATAGGAGACAAG 180
Sweet TCTGCCCTTAAGACTAGGATAACAGTTGGAAACGATTGCTAAGACTGGATAGGAGATAAG 141
Tomato ------------------------------------------------------------
ColumbiaBasin AAGGCATCTTTTTGTTTTTAAAAGACCTTCTTACGAAGGTATGCTTAAAGAGGGGCTTGC 233
Washington AAGGCATCTTTTTGTTTTTAAAAGACCTTCTTACGAAGGTATGCTTAAAGAGGGGCTTGC 208
Nebraska AAGGCATCTTCTTGTTTTTAAAAGACCTAGTGAT--AGGTATGTTTAGGGAGGAGCTTGC 206
Texas AAGGCATCTTCTTGTTTTTAAAAGACCTAGTGAT--AGGTATGTTTAGGGAGGAGCTTGC 206
Capsicuum AGGGCATCTTCTTGTTTTTAAAAGACCTAGCAAT--AGGTATGCTTAGGGAGGAGCTTGC 229
Petunia AAGGCATCTTCTTGTTTTTAAAAGACCTAGCAAT--AGGTATGCTTAGGGAGGAGCTTGC 91
Withania AAGGCATCTTCTTGTTTTTAAAAGACCTAGCAAT--AGGTATGCTTAGGGAGGAGCTTGC 186
Potato AAGGCATCTTCTTGAAATTAAAAGACCTAGCAAT--AGGTATGCTTACCGAGGAGCTTGC 238
Sweet AAGGCATCTTTTTATTTTTAAAAGACCTAGCAAT--AGGTATGCTTAAGGAGGAGCTTGC 199
Tomato ------------------------------------------------------------
ColumbiaBasin GCCACATTAGTTAGTTGGTAGGGTAAAAGCCTACCAAGACGATGATGTGTAGCTGGACTG 293
Washington GCCACATTAGTTAGTTGGTAGGGTAAAAGCCTACCAAGACGATGATGTGTAGCTGGACTG 268
Nebraska GTCACATTAGTTAGTTGGTAGGGTAAAAGCCTACCAAGACGATGATGTGTAGCCGGACTG 266
Texas GTCACATTAGTTAGTTGGTAGGGTAAAAGCCTACCAAGACGATGATGTGTAGCCGGACTG 266
Capsicuum GTCACATTAGTTAGTTGGTGGGGTAAAGGCCTACCAAGACTATGATGTGTAGCCGGGCTG 289
Petunia GTCACATTAGTTAGTTGGTGGGGTAAAGGCCTACCAAGACTATGATGTGTAGCCGGGCTG 151
Withania GTCACATTAGTTAGTTGGTGGGGCAAAGGCCTACCAAGACTATGATGTGTAGCCGGGCTG 246
Potato GTCACATTAGTTAGTTGGTGGGGTAAACGCCTACCAAGACTATGATGTGTAGCCGGGCTG 298
Sweet GTCACATTAGTTTGTTGGTGGGGTAATGGCCTACCAAGACTATGATGTGTAGCCGGGCTG 259
Tomato ------------------------------------------------------------
ColumbiaBasin AGAGGTTGAACAGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAG 353
Washington AGAGGTTGAACAGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAG 328
Nebraska AGAAGTTGAACGGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAG 326
Texas AGAGGTTGAACGGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAG 326
Capsicuum AGAGGTTGAACGGCCACATTGGGACTGAGACACGGCC-AAACTCCTACGGGAGGCAGCAG 348
Petunia AGAGGTTGAACGGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAG 211
Withania AGAGGTTGAACGGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAG 306
Potato AGAGGTTGAACGGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAG 358
Sweet AGAGGCTGAACGGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAG 319
Tomato ------------------------------------------------------------
ColumbiaBasin TAGGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAACGATGAAGT 413
Washington TAGGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAACGATGAAGT 388
Nebraska TAAGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAATGCCGCGTGAACGATGAAGT 386
Texas TAAGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAATGCCGCGTGAACGATGAAGT 386
Capsicuum TAGGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAACGATGAAGT 408
Petunia TAGGGAATTCTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAACGATGAAGT 271
Withania TAGGAAATTTTCGGCAATGGAGGAAACTTTGACCGAGCAACGCCGCGTGAACGATGAAGT 366
Potato TACCGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAACGATGAACT 418
Sweet TAGGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAATGATGAAGT 379
Tomato ------------------------------------------------------------
ColumbiaBasin ATTTCGGTATGTAAAGTTCTTTTATTGAAGAAGAAAAAGTAGTGGAAAAACTATATTGAC 473
Washington ATTTCGGTATGTAAAGTTCTTTTATTGAAGAAGAAAAAGTAGTGGAAAAACTATATTGAC 448
Nebraska ATTTCGGTACGTAAAGTTCTTTTATTAGAGAAGAAAAGATGGTGGAAAAACCATTATGAC 446
Texas ATTTCGGTACGTAAAGTTCTTTTATTAGAGAAGAAAAGATGGTGGAAAAACCATTATGAC 446
Capsicuum ATTTCGGTACGTAAAGTTCTTTTATTAGGGAAGAATAAATGATGGAAAAATCATTCTGAC 468
Petunia ATTTCGGTACGTAAAGTTCTTTTATTAGGGAAGAATAAATGATGGAAAAATCATTCTGAC 331
Withania ATTTCGGTACGTAAAGTTCTTTTTTTAGGGAAGAATAAATGATGGAAAAATCATTCTGAC 426
Potato ATTTCGGTACGTAAAGTTCTTTTATTAGGGAAGAATAAATGATGGATTTATCATTCTGAC 478
Sweet ATTTCGGTACGTAAAGTTCTTTTATTAGGGGAGAAAAGATGGCGGAAAAACCATTATGAC 439
Tomato ------------------------------------------------------------
ColumbiaBasin GTTATTCAATGAATAAGCCCCGGCTAACTATGTGCCAGCAGCCGCGGTAAGACATAGGGG 533
Washington GTTATTCAATGAATAAGCCCCGGCTAACTATGTGCCAGCAGCCGCGGTAAGACATAGGGG 508
Nebraska GGTACCTAATGAATAAGCTCCGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGGA 506
Texas GGTACCTAATGAATAAGCTCCGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGGA 506
Capsicuum GGTACCTAATGAATAAGCCCCGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGGG 528
Petunia GGTACCTAATGAATAAGCCCCGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGGG 391
Withania GGTACCTAATGAATAAGCCCCGGCAAACTATGTGCCAGCAGCCGCGGTAATACATAGGGG 486
Potato GGTACCTAATGAATAAGCCCCGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGGG 538
Sweet GGTACCTAATGAATAAGCCCCGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGGG 499
Tomato ------------------------------------------------------------
ColumbiaBasin GCGAGCGTTATCCGGAATTA---TTGGGCGTAAAGGGTGCGTAGGCTGTTAGATAAGTCT 590
Washington GCGAGCGTTATCCGGAATTA---TTGGGCGTAAAGGGTGCGTAGGCTGTTAGATAAGTCT 565
Nebraska GCAAGCGTTATCCGGAATTA---TTGGGCGTAAAGGGTGCGTAGGCGGTTAAATAAGTTT 563
Texas GCAAGCGTTATCCGGAATTA---TTGGGCGTAAAGGGTGCGTAGGCGGTTAAATAAGTTT 563
Capsicuum GCAAGCGTTATCCGGAATTATTATTGGGCGTAAAGGGTGCGTAGGCGGTTAAATAAGTTT 588
Petunia GCAAGCGTTATCCGGAATTA---TTGGGCGTAAAGGGTGCGTAGGCGGTTAAATAAGTTT 448
Withania GCAAGCGTTATCCGGAATTA---TTGGGCGTAAAGGGTGCGTAGGCGGTTAAATAAGTTT 543
Potato GCAAGCGTTATCCGGAATTA---TTGGGCGTAAAGGGTGCGTAGGCGGTTAAATAAGTTT 595
Sweet GCAAGCGTTATCCGGAATTA---TTGGGCGTAAAGGGTGCGTAGGCGGTTAAATAAGTTT 556
Tomato ------------------------------------------------------------
ColumbiaBasin ATAATTTAATTTCAGTGCTTAACGCTGTCTTGTTATAGAAACTGTCTTGACTAGAGTGAG 650
Washington ATAATTTAATTTCAGTGCTTAACGCTGTCTTGTTATAGAAACTGTCTTGACTAGAGTGAG 625
Nebraska ATGGTATAAGTGCAATGCTCAACGTTGTGATGCTATAAAAACTGT-TTAGCTAGAGTTGG 622
Texas ATGGTATAAGTGCAATGCTCAACGTTGTGATGCTATAAAAACTGT-TTAGCTAGAGTTGG 622
Capsicuum ATGGTCTAAGTGCAATGCTCAACATTGTGATGCTATAAAAACGGT-TTAGCTTGAGTAAC 647
Petunia ATGGTCTAAGTGCAATGCTCAACATTGTGATGCTATAAAAACTGT-TTAGCTAGAGTAAG 507
Withania ATGGTCTAAGTGCAATGCTCAACATTGTGATGCTATAAAAACTGT-TTAGCTAGAGTAAG 602
Potato ATGGTCTAAGTGCAATGCTCAACATTGTGATGCTATAAAAACTGT-TTAGCTAGAGTAAG 654
Sweet ATGGTCTAAGTGCAACGCTCAACGTTGTGATGCTATAAAAACTGT-TTAGCTAGAGTTGG 615
Tomato ------------------------------------------------------------
ColumbiaBasin ATAGAGGCAAGCGGAATTCC-ATGTGTAGCGGTAAAATGTGTAAATATATGGAGGAACAC 709
Washington ATAGAGGCAAGCGGAATTCC-ATGTGTAGCGGTAAAATGTGTAAATATATGGAGGAACAC 684
Nebraska ATAGAGGCAAGTGGAATTCC-ATGTGTAGTGGTAAAATGCGTAAATATATGGAGGAACAC 681
Texas ATAGAGGCAAGTGGAATTCC-ATGTGTAGTGGTAAAATGCGTAAATATATGGAGGAACAC 681
Capsicuum ATGGAGGGACGTGAAATTCCCATGTGTAGTGGTAAAATGCGTAAATATATGGAGGAACAC 707
Petunia ATAGAGGCAAGTGGAATTCC-ATGTGTAGTGGTAAAATGCGTAAATATATGGAGGAACAC 566
Withania ATAGAGGCAAGTGGAATTCC-ATGTGTAGTGGTAAAATGCGTAAATATATGGAGGAACAC 661
Potato ATAGAGGCAAGTGGAATTCC-ATGTGTAGTGGTAAAATGCGTAAATATATGGAGGAACAC 713
Sweet ATAGAGGCAAGTGGAATTCC-GTGTGTAGTGGTAAAATGCGTAAATATACGGAGGAACAC 674
Tomato ------------------------------------------------------------
ColumbiaBasin CAGAAGCGTAGGCGGCTTGCTGGGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGCAGC 769
Washington CAGAAGCGTAGGCGGCTTGCTGGGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGTAGC 744
Nebraska CAGAGGCGAAGGCGGCTTGCTGGGTCTTAACTGACGCTGAGGCACGAAAGCGTGGGGAGC 741
Texas CAGAGGCGAAGGCGGCTTGCTGGGTCTTAACTGACGCTGAGGCACGAAAGCGTGGGGAGC 741
Capsicuum CAGTAGCGAAGGCGGCTTGCTGGGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGGAGC 767
Petunia CAGTAGCGAAGGCGGCTTGCTGTGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGGAGC 626
Withania CAGTAGCGAAGGCGGCTTGCTGGGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGGAGC 721
Potato CAGTAGCGAAGGCGGCTTGCTGGGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGGAGC 773
Sweet CAGAAGCGAAGGCGGCTTGCTGGGTCTTAACTGACGCTGAGGCACGAAAGCGTGGGGAGC 734
Tomato ------------------------------------------------------------
ColumbiaBasin AAA-CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAGTGTCGGGG 828
Washington AAA-CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAGTGTCGGGG 803
Nebraska AAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATGAGTACTAAACGTTGGG- 800
Texas AAA-CAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATGAGTACTAAACGTTGGG- 799
Capsicuum AAA-CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAACGTTGGG- 825
Petunia AAA-CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAACGTTGGT- 684
Withania AAA-CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAACGTTGGG- 779
Potato AAA-CAGGAAAAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAACGTTGGG- 831
Sweet AAA-CAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATAAGTACTAAACGTTGGG- 792
Tomato ------------------------------------------------------------
ColumbiaBasin TAAAACTCGGTACTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGT 888
Washington TAAAACTCGGTACTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGT 863
Nebraska TAAAAC-CAGTGTTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGT 859
Texas TAAAAC-CAGTGTTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGT 858
Capsicuum TAAAAC-CAGTGTTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGT 884
Petunia TAAAAC-TAGTGTTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGT 743
Withania TAAAAC-CAGTGTTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGT 838
Potato TAAAAC-CAGTGTTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGT 890
Sweet TTAAAC-CAGTGTTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGT 851
Tomato ------------------------------------------------------------
ColumbiaBasin ATGAAACTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCG 948
Washington ATGAAACTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCG 923
Nebraska ATGAAACTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCG 919
Texas ATGAAACTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCG 918
Capsicuum ATGAAACTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCG 944
Petunia ATGAAACTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCG 803
Withania ATGAAACTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCG 898
Potato ATGAAACTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCG 950
Sweet ATGAAACTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCG 911
Tomato ------------------------------------------------------------
ColumbiaBasin AAGATACACGAAAAATCTTACCAGGTCTTGACATACT-CTGCAAAGCTATAGAAATATAG 1007
Washington AAGATACACGAAAAATCTTACCAGGTCTTGACATACT-CTGCAAAGCTATAGAAATATAG 982
Nebraska AAGATACCCGAAAAACCTCACCAGGTCTTGACATGCTTTTGCAAAGCTGTAGAAATATAG 979
Texas AAGATACCCGAAAAACCTCACCAGGTCTTGACATGCTTTTGCAAAGCTGTAGAAATATAG 978
Capsicuum AAGGTACCCGAAAAACCTCACCAGGTCTTGACATGCTTCTGCAAAGCTGTAGAAACACAG 1004
Petunia AAGGTACCCGAAAAACCTCACCAGGTCTTGGCATGCTTCTGCAAAGCTGTAGAAACACAG 863
Withania AAGGTACCCGAAAAACCTCACCAGGTCTTGACATGCTTCTGCAAAGCTGTAGAAACACAG 958
Potato AAGGTACCCGAAAAACCTCACCAGGTCTTGACATGCTTCTGCAAAGCTGTAGAAACACAG 1010
Sweet AAGGTACCCGAAAAACCTCACCAGGTCTTGACATGCTTCTGCAAAGCTGTAGAAACACAG 971
Tomato ------------------------------------------------------------
ColumbiaBasin TGGAGGTTATCAGGGATACAGGTGGTGCATGGTTGTCGTCAGTTCGTGTCGTGAGATGTT 1067
Washington TGGAGGTTATCAGGGATACAGGTGGTGCATGGTTGTCGTCAGTTCGTGTCGTGAGATGTT 1042
Nebraska TGGAGGTTATCAGAAGCACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTT 1039
Texas TGGAGGTTATCAGAAGCACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTT 1038
Capsicuum TGGAGGTTATCAGTTGCACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTT 1064
Petunia TGGAGGTTATCAGTTGCACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTT 923
Withania TGGAGGTTATCAGTTGCACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTT 1018
Potato TGGAGGTTATCAGTTGCACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTT 1070
Sweet TGAAGGTTATCAGTTGCACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTT 1031
Tomato --------GTCAAAGTAACTGGTTAAAAATTATTATTATCGGCTGTCCGCGGGAG-TAAT 51
*** ** *** ** ** * ** * * ** *** * *
ColumbiaBasin AGGTTAAGTCCTAAAACGAGCGCAACCCTTGTCGTTAATTGCCAGCACGTAATGGTGGGG 1127
Washington AGGTTAAGTCCTAAAACGAGCGCAACCCTTGTCGTTAATTGCCAGCACGTAATGGTGGGG 1102
Nebraska GGGTTAAGTCCCGCAACGAGCGCAACCCTTGTTGTTAATTGCCATCATTAAGT--TGGGG 1097
Texas GGGTTAAGTCCCGCAACGAGCGCAACCCTTGTTGTTAATTGCCATCATTAAGT--TGGGG 1096
Capsicuum GGGTTAAGTCCCGCAACGAGCGCAACCCTTATTGTTAGTTACCAGCACGTAATGGTGGGG 1124
Petunia GGGTTAAGTCCCGCAACGAGCGCAACCCTTATTGTTAGTTACCAGCACGTAATGGTGGGG 983
Withania GGGTTAAGTCCCGCAACGAGCGCAACCCTTATTGTTAGTTACCAGCACGTAATGGTGGGG 1078
Potato GCCTTAAGTCCCGCAACGAGCGCAACCCTTATTGTTAGTTACCAGCACGTAATGGTGGGG 1130
Sweet GGGTTAAGTCCCGCAACGAGCGCAACCCTTGTCGTTAATTGCCATCATTAAGT--TGGGG 1089
Tomato ACGTTTTCATCGGGGTTTTGTACACACC----GGCCGATCACCCTTTTAAAAAGTTGGCA 107
** * * ** ** * * ** * ***
ColumbiaBasin ACTTTAGCGAGACTGCCAATTAAACATT--GGAGGAAGGTGAGGATTACGTCAAATCATC 1185
Washington ACTTTAGCGAGACTGCCAATTAAACATT--GGAGGAAGGTGAGGATTACGTCAAATCATC 1160
Nebraska ACTTTAGCAAGACTGCCAATGATAAATT--GGAGGAAGGTGGGGACGACGTCAAATCATC 1155
Texas ACTTTAGCAAGACTGCCAATGATAAATT--GGAGGAAGGTGGGGACGACGTCAAATCATC 1154
Capsicuum ACTTTAGCAAGACTGCCAGTGATAAATT--GGAGGAAGGTGGGGACGACGTCAAATCATC 1182
Petunia ACTTTAGCAAGACTGCCAGTGATAAATT--GGAGGAAGGTGGGGACGACGTCAAATCATC 1041
Withania ACTTTAGCAAGACTGCCAGTGATAAATT--GGAGGAAGGTGGGGACGACGTCAAATCATC 1136
Potato ACTTTAGCAAGACTGCCAGTGATAAATT--GGAGGAAGGTGGGGACGACGTCAAATCATC 1188
Sweet ACTTTAGCGAGACTGCCAATGATAAATT--GGAGGAAGGTGGGGACAACGTCAAATCATC 1147
Tomato ATACC--CAAAGCCGGTGGCCATAACTTTCGCAAGAAGAGGGAAACCGCTCTAAG----- 160
* * * * * * * ** * * **** * * * **
ColumbiaBasin ATGCCCCTTATGATCTGGGCTACAAACGTGATACAATGGCTGTGACAA-AGAGTAGCTGA 1244
Washington ATGCCCCTTATGATCTGGGCTGCAAACGTGATACAATGGCTGTGACAA-AGAGTAGCTGA 1219
Nebraska ATGCCCCTTATGACCTGGGCTACAAACGTGATACAATGGCTGTTACAA-AGGGTAGCTAA 1214
Texas ATGCCCCTTATGACCTGGGCTACAAACGTGATACAATGGCTGTTACAA-AGGGTAGCTAA 1213
Capsicuum ATGCCCCTTATGACCTGGGCTACAAACGTGATACAATGGCTGTTACAA-AGGGTAGCTGA 1241
Petunia ATGCCCCTTATGACCTGGGCTACAAACATGATACAATGGCTGTTACAA-AGGGTAGCTGA 1100
Withania ATGCCCCTTATGACCTGGGCTACAAACGTGATACAATGGCTGTTACAA-AGGGTAGCTGA 1195
Potato ATGCCCCTTATGACCTGGGCTACAAACGTGATACAATGGCTGTTACAA-AGGGTAGCTGA 1247
Sweet ATGCCCCTTATGACCTGGGCTACAAACGTGATACAATGGCTGTTACAA-AGGGTGGCTAA 1206
Tomato GTAGGGGCGATGATTGCGGTTA-AGCCGTAACAGGGTAACCCTACTGGCAAGGTGGGGAT 219
* **** ** * * * * * * * * * * ** *
ColumbiaBasin AACGCGAGTTTTTAGCCAATCTCAAAAAAGCAGTCTCAGTTCGGATTGAAGTCTGTAACT 1304
Washington AACGCGAGTTTTTAGCCAATCTCAAAAAAGCAGTCTCAGTTCGGATTGAAGTCTGTAACT 1279
Nebraska AGCGTAAGTTTTTGGCGAATCTCAAAAAAGCAGTCTCAGTTCGGATTGAAGTCTGCAACT 1274
Texas AGCGTAAGTTTTTGGCGAATCTCAAAAAAGCAGTCTCAGTTCGGATTGAAGTCTGCAACT 1273
Capsicuum AGCGCAAGTTTTTGGCGAATCTCAAAAAAACAGTCTCAGTTCGGATTGAAGTCTGCAACT 1301
Petunia AGCGCAAGTTTTTGGCGAATCTCAAAAAAACAGTCTCAGTTCGGATTGAAGTCTGCAACT 1160
Withania AGCGCAAGTTTTTGGCGAATCTCAAAAAAACAGTCTCAGTTCGGATTGAAGTCTGCAACT 1255
Potato AGCGCAAGTTTTTGGCGAATCTCAAAAAAACAGTCTCAGTTCGGATTGAAGTCTGCAACT 1307
Sweet AGCGCAAGTTTCTGGCGAATCTCAAAAAAACAGTCTCAGTTCGGATTGAAGTCTGCAACT 1266
Tomato GGCACCATTTTCCGATTCCATATAATGATATA---------------------------- 251
* * *** ** * *
ColumbiaBasin CGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAATCAGCATGTCGCGGTGAATACGTT 1364
Washington CGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAATCAGCATGTCGCGGTGAATACGTT 1339
Nebraska CGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAATCAGCATGTCGCGGTGAATACGTT 1334
Texas CGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAATCAGCATGTCGCGGTGAATACGTT 1333
Capsicuum CGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAATCAGCATGTCGCGGTGAATACGTT 1361
Petunia CGACCTCATGAAGTTGGAATCGCTAGTAATCGCGAATCAGCATGTCGCGGTGAATACGTT 1220
Withania CGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAATCAGCATGTCGCGGTGAATACGTT 1315
Potato CGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAATCAGCATGTCGCGGTGAATACGTT 1367
Sweet CGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAATCAGCATGTCGCGGTGAATACGTT 1326
Tomato ------------------------------------------------------------
ColumbiaBasin CTCGGGGTTTGTACACACCGCCCGTCAAACCACGAAAGTTAGCAATACCCGAAAGCAGTA 1424
Washington CTCGGGGTTTGTACACACCGCCCGTCAAACCACGAAAGTTAGCAATACCCGAAAGCAGTA 1399
Nebraska CTCGGGGTTTGTACACACCGCCCGTCAAACCACGAAAGTTGGCAATACCCAAAGCTGGTG 1394
Texas CTCGGGGTTTGTACACACCGCCCGTCAAACCACGAAAGTTGGCAATACCCAAAGCTGGTG 1393
Capsicuum CTCGGGGTTTGTACACACCGCCCGTCAAACCACGAAAGTTGGTAATACCCAAAGCCGGTG 1421
Petunia GACGGGGTTTGTACACACCGCCCGTCAA-------------------------------- 1248
Withania CTCGGGGTTTGTACACACCGCCCGTCAAACCACGAAAGTTGGTAATACCCAAAGCCGGTG 1375
Potato CTCGGGGTTTGTACACACCGCCCGTCAAACCACGAAAGTTGGAAATACCCAAAGCCGGTG 1427
Sweet CTCGGGGTTTGTACACACCGCCCGTCAAACCACGAAAGTTGGCAATACCCAAAGCCGGTG 1386
Tomato ------------------------------------------------------------
ColumbiaBasin GCTTAACTTCGCAAG--AAGAGGGAACTGTCTAAGGTAGGGTTGATGATTGGGGTTAAGT 1482
Washington GCTTAACTTCGCAAG--AAGAGGGAACTGTCTAAGGTAGGGTTGATGATTGGGGTTAAGT 1457
Nebraska GCTTAACTTGAGTAATCAAGAGGGAACCATCTAAGGTAGGGTTGATGATTGGGGTTAAGT 1454
Texas GCTTAACTTGAGTAATCAAGAGGGAACCATCTAAGGTAGGGTTGATGATTGGGGTTAAGT 1453
Capsicuum GCCTAACTTCGCAAG--AAGAGGGAACCGTCTAAGGTAGGGTCGATGATTGGGGTTAAGT 1479
Petunia ------------------------------------------------------------
Withania GCCTAACTTCGCAAG--AAGAGGGAACCGTCTAAGGTAGGGTCGATGATTGGGGTTAAG- 1432
Potato GCCTAACTTCGCAAG--AAGAGGGAACCGTCTAAGGTAGGTTCGATGATTGGGGTTAAGT 1485
Sweet GCCTAACTTGTGCAAGCAAGAGGGAGCCGTCTAAGGTAGGGTTGATAATTGGGGTTAAGT 1446
Tomato ------------------------------------------------------------
ColumbiaBasin CGTAACAAGGTATCCCTACCGGAAGGTGGGGATGGATCACCTCCTTTCTAAGGACTATAT 1542
Washington CGTAACAAGGTATCCCTACCGGAAGGTGGGGATGGATCACCTCCTTT------------- 1504
Nebraska CGTAACAAGGTATCCCTACCGGAAGGTGGGGATGGATCACCTCCTTTCT----------- 1503
Texas CGTAACAAGGTATCCCTACCGGAAGGTGGGGATGGATCACCTCCTTTCT----------- 1502
Capsicuum CGTAACAAGGTATCCCTACCGGAA------------------------------------ 1503
Petunia ------------------------------------------------------------
Withania ------------------------------------------------------------
Potato CGTAACAAGGT------------------------------------------------- 1496
Sweet CGTAACAAGGTATCCCTGCCGGAAGGTGGGGATGGATCACCTCCTTTCT----------- 1495
Tomato ------------------------------------------------------------
ColumbiaBasin ATACTAAAACCATCATCTTCAGTTTTGAAAGACTTAAGTAGAAAATAAGTTTTTCTTTTA 1602
Washington ------------------------------------------------------------
Nebraska ------------------------------------------------------------
Texas ------------------------------------------------------------
Capsicuum ------------------------------------------------------------
Petunia ------------------------------------------------------------
Withania ------------------------------------------------------------
Potato ------------------------------------------------------------
Sweet ------------------------------------------------------------
Tomato ------------------------------------------------------------
ColumbiaBasin AGCGCCAAAGGGCCTATAGCTCAGTTGGTTAGAGCACACGCCTGATAAGCGTGAGGTCGG 1662
Washington ------------------------------------------------------------
Nebraska ------------------------------------------------------------
Texas ------------------------------------------------------------
Capsicuum ------------------------------------------------------------
Petunia ------------------------------------------------------------
Withania ------------------------------------------------------------
Potato ------------------------------------------------------------
Sweet ------------------------------------------------------------
Tomato ------------------------------------------------------------
ColumbiaBasin TGGTTCAAGTCCATTTAGGCCCACCAAAAAAAGGTCCTGCTTAAAAAGTTCTTTGAAAAG 1722
Washington ------------------------------------------------------------
Nebraska ------------------------------------------------------------
Texas ------------------------------------------------------------
Capsicuum ------------------------------------------------------------
Petunia ------------------------------------------------------------
Withania ------------------------------------------------------------
Potato ------------------------------------------------------------
Sweet ------------------------------------------------------------
Tomato ------------------------------------------------------------
ColumbiaBasin TAGATGAACATGCCTTAAAACTTTCATAAAGTTGAAGGAAGTAAGGGCATATAGTGGATG 1782
Washington ------------------------------------------------------------
Nebraska ------------------------------------------------------------
Texas ------------------------------------------------------------
Capsicuum ------------------------------------------------------------
Petunia ------------------------------------------------------------
Withania ------------------------------------------------------------
Potato ------------------------------------------------------------
Sweet ------------------------------------------------------------
Tomato ------------------------------------------------------------
ColumbiaBasin TCCTTGGCACTAAGAGCCGATGAAGGACG 1811
Washington -----------------------------
Nebraska -----------------------------
Texas -----------------------------
Capsicuum -----------------------------
Petunia -----------------------------
Withania -----------------------------
Potato -----------------------------
Sweet -----------------------------
Tomato -----------------------------
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