CLUSTAL W Alignment of Phytoplasma associated with Solanaceae family (16 S r RNA seq):


ColumbiaBasin      -----AAGAGTTTGATCCTGGCTCAGGATTAACGCTGGCGGCGTGCCTAATACATGCAAG 55
Washington         ------------------------------AACGCTGGCGGCGCGCCTAATACATGCAAG 30
Nebraska           ------------------------------AACGCTGGCGGCGCGCCTAATACATGCAAG 30
Texas              ------------------------------AACGCTGGCGGCGCGCCTAATACATGCAAG 30
Capsicuum          ---------GCGAATTTGGACACTTCAAGTCTGTACGACTCCTCAGAATGGACATGCAAG 51
Petunia            ------------------------------------------------------------
Withania           ----------------------------------------------------CATGCAAG 8
Potato             ATACGAAGAGAATGATCCTGGCTCAGGATTAACGCTGGCCGCGTGCCTAATACATGCAAG 60
Sweet              ---------------------------------------GGCGTGCCTAATACATGCAAG 21
Tomato             ------------------------------------------------------------
                                                                               

ColumbiaBasin      TCGAGCGAAAACCCCTTAAA--AGGTTTTAGTGGCGAACGGGTGAGTAACACGTAAGTAA 113
Washington         TCGAACGAAAACCCCTTAAA--AGGTTTTAGTGGCGAACGGGTGAGTAACACGTAAGTAA 88
Nebraska           TCGAACGGAAGTTTCTTCGG--AAATTTTAGTGGCGAACGGGTGAGTAACGCGTAAGCAA 88
Texas              TCGAACGGAAGTTTCTTCGG--AAATTTTAGTGGCGAACGGGTGAGTAACGCGTAAGCAA 88
Capsicuum          TCGAACGGAAGTTAAAGCAATTAAACTTTAGTGGCGAACGGGTGAGTAACGCGTAAGGAA 111
Petunia            ------------------------------------------------------------
Withania           TCGAACGGAAGTTTAAGCAATTAAACTCTAGTGGCGAACGGGTGAGTAACGCGTAAGCAA 68
Potato             TCGAACCCAAGTTTAAGCAATTAAACTTTAGTGGCGAACGGGTGAGTAACGCGTAAGCAA 120
Sweet              TCGAACGGAAGTTTAAGTAATTAAACTTTAGTGGCGAACGGGTGAGTAACGCGTAAGCAA 81
Tomato             ------------------------------------------------------------
                                                                               

ColumbiaBasin      CCTGCCTTTAAGACGAGGATAACAATTGGAAACGGTTGCTAAGACTGGATAGGAAACAAA 173
Washington         CCTGCCTTTAAGACGAGGATAACAATTGGAAACGGTTGCTAAGACTGGATAGGAAACAAA 148
Nebraska           TCTGCCCCTAAGACGAGGATAACAGTTAGAAATGACTGCTAAGACTGGATAGGAGATAAG 148
Texas              TCTGCCCCTAAGACGAGGATAACAGTTAGAAATGACTGCTAAGACTGGATAGGAGATAAG 148
Capsicuum          TCTGCCCCTAAGACGAGGATAACAGTTGGAAACGACTGCTAAGACTGGATAGGAGACAAG 171
Petunia            ---------------------------TACGACTGCTGCTAAGACTGGATAGGAGACAAG 33
Withania           TCTGCCCCTAAGACGAGGATAACAGTTGGAAACGACTGCTAAGACTGGATAGGAGACAAG 128
Potato             TCTGCCCCTAAGACGAGGATAACAGTTGGAAACGACTGCTAAGACTGGATAGGAGACAAG 180
Sweet              TCTGCCCTTAAGACTAGGATAACAGTTGGAAACGATTGCTAAGACTGGATAGGAGATAAG 141
Tomato             ------------------------------------------------------------
                                                                               

ColumbiaBasin      AAGGCATCTTTTTGTTTTTAAAAGACCTTCTTACGAAGGTATGCTTAAAGAGGGGCTTGC 233
Washington         AAGGCATCTTTTTGTTTTTAAAAGACCTTCTTACGAAGGTATGCTTAAAGAGGGGCTTGC 208
Nebraska           AAGGCATCTTCTTGTTTTTAAAAGACCTAGTGAT--AGGTATGTTTAGGGAGGAGCTTGC 206
Texas              AAGGCATCTTCTTGTTTTTAAAAGACCTAGTGAT--AGGTATGTTTAGGGAGGAGCTTGC 206
Capsicuum          AGGGCATCTTCTTGTTTTTAAAAGACCTAGCAAT--AGGTATGCTTAGGGAGGAGCTTGC 229
Petunia            AAGGCATCTTCTTGTTTTTAAAAGACCTAGCAAT--AGGTATGCTTAGGGAGGAGCTTGC 91
Withania           AAGGCATCTTCTTGTTTTTAAAAGACCTAGCAAT--AGGTATGCTTAGGGAGGAGCTTGC 186
Potato             AAGGCATCTTCTTGAAATTAAAAGACCTAGCAAT--AGGTATGCTTACCGAGGAGCTTGC 238
Sweet              AAGGCATCTTTTTATTTTTAAAAGACCTAGCAAT--AGGTATGCTTAAGGAGGAGCTTGC 199
Tomato             ------------------------------------------------------------
                                                                               

ColumbiaBasin      GCCACATTAGTTAGTTGGTAGGGTAAAAGCCTACCAAGACGATGATGTGTAGCTGGACTG 293
Washington         GCCACATTAGTTAGTTGGTAGGGTAAAAGCCTACCAAGACGATGATGTGTAGCTGGACTG 268
Nebraska           GTCACATTAGTTAGTTGGTAGGGTAAAAGCCTACCAAGACGATGATGTGTAGCCGGACTG 266
Texas              GTCACATTAGTTAGTTGGTAGGGTAAAAGCCTACCAAGACGATGATGTGTAGCCGGACTG 266
Capsicuum          GTCACATTAGTTAGTTGGTGGGGTAAAGGCCTACCAAGACTATGATGTGTAGCCGGGCTG 289
Petunia            GTCACATTAGTTAGTTGGTGGGGTAAAGGCCTACCAAGACTATGATGTGTAGCCGGGCTG 151
Withania           GTCACATTAGTTAGTTGGTGGGGCAAAGGCCTACCAAGACTATGATGTGTAGCCGGGCTG 246
Potato             GTCACATTAGTTAGTTGGTGGGGTAAACGCCTACCAAGACTATGATGTGTAGCCGGGCTG 298
Sweet              GTCACATTAGTTTGTTGGTGGGGTAATGGCCTACCAAGACTATGATGTGTAGCCGGGCTG 259
Tomato             ------------------------------------------------------------
                                                                               

ColumbiaBasin      AGAGGTTGAACAGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAG 353
Washington         AGAGGTTGAACAGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAG 328
Nebraska           AGAAGTTGAACGGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAG 326
Texas              AGAGGTTGAACGGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAG 326
Capsicuum          AGAGGTTGAACGGCCACATTGGGACTGAGACACGGCC-AAACTCCTACGGGAGGCAGCAG 348
Petunia            AGAGGTTGAACGGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAG 211
Withania           AGAGGTTGAACGGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAG 306
Potato             AGAGGTTGAACGGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAG 358
Sweet              AGAGGCTGAACGGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAG 319
Tomato             ------------------------------------------------------------
                                                                               

ColumbiaBasin      TAGGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAACGATGAAGT 413
Washington         TAGGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAACGATGAAGT 388
Nebraska           TAAGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAATGCCGCGTGAACGATGAAGT 386
Texas              TAAGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAATGCCGCGTGAACGATGAAGT 386
Capsicuum          TAGGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAACGATGAAGT 408
Petunia            TAGGGAATTCTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAACGATGAAGT 271
Withania           TAGGAAATTTTCGGCAATGGAGGAAACTTTGACCGAGCAACGCCGCGTGAACGATGAAGT 366
Potato             TACCGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAACGATGAACT 418
Sweet              TAGGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAATGATGAAGT 379
Tomato             ------------------------------------------------------------
                                                                               

ColumbiaBasin      ATTTCGGTATGTAAAGTTCTTTTATTGAAGAAGAAAAAGTAGTGGAAAAACTATATTGAC 473
Washington         ATTTCGGTATGTAAAGTTCTTTTATTGAAGAAGAAAAAGTAGTGGAAAAACTATATTGAC 448
Nebraska           ATTTCGGTACGTAAAGTTCTTTTATTAGAGAAGAAAAGATGGTGGAAAAACCATTATGAC 446
Texas              ATTTCGGTACGTAAAGTTCTTTTATTAGAGAAGAAAAGATGGTGGAAAAACCATTATGAC 446
Capsicuum          ATTTCGGTACGTAAAGTTCTTTTATTAGGGAAGAATAAATGATGGAAAAATCATTCTGAC 468
Petunia            ATTTCGGTACGTAAAGTTCTTTTATTAGGGAAGAATAAATGATGGAAAAATCATTCTGAC 331
Withania           ATTTCGGTACGTAAAGTTCTTTTTTTAGGGAAGAATAAATGATGGAAAAATCATTCTGAC 426
Potato             ATTTCGGTACGTAAAGTTCTTTTATTAGGGAAGAATAAATGATGGATTTATCATTCTGAC 478
Sweet              ATTTCGGTACGTAAAGTTCTTTTATTAGGGGAGAAAAGATGGCGGAAAAACCATTATGAC 439
Tomato             ------------------------------------------------------------
                                                                               

ColumbiaBasin      GTTATTCAATGAATAAGCCCCGGCTAACTATGTGCCAGCAGCCGCGGTAAGACATAGGGG 533
Washington         GTTATTCAATGAATAAGCCCCGGCTAACTATGTGCCAGCAGCCGCGGTAAGACATAGGGG 508
Nebraska           GGTACCTAATGAATAAGCTCCGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGGA 506
Texas              GGTACCTAATGAATAAGCTCCGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGGA 506
Capsicuum          GGTACCTAATGAATAAGCCCCGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGGG 528
Petunia            GGTACCTAATGAATAAGCCCCGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGGG 391
Withania           GGTACCTAATGAATAAGCCCCGGCAAACTATGTGCCAGCAGCCGCGGTAATACATAGGGG 486
Potato             GGTACCTAATGAATAAGCCCCGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGGG 538
Sweet              GGTACCTAATGAATAAGCCCCGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGGG 499
Tomato             ------------------------------------------------------------
                                                                               

ColumbiaBasin      GCGAGCGTTATCCGGAATTA---TTGGGCGTAAAGGGTGCGTAGGCTGTTAGATAAGTCT 590
Washington         GCGAGCGTTATCCGGAATTA---TTGGGCGTAAAGGGTGCGTAGGCTGTTAGATAAGTCT 565
Nebraska           GCAAGCGTTATCCGGAATTA---TTGGGCGTAAAGGGTGCGTAGGCGGTTAAATAAGTTT 563
Texas              GCAAGCGTTATCCGGAATTA---TTGGGCGTAAAGGGTGCGTAGGCGGTTAAATAAGTTT 563
Capsicuum          GCAAGCGTTATCCGGAATTATTATTGGGCGTAAAGGGTGCGTAGGCGGTTAAATAAGTTT 588
Petunia            GCAAGCGTTATCCGGAATTA---TTGGGCGTAAAGGGTGCGTAGGCGGTTAAATAAGTTT 448
Withania           GCAAGCGTTATCCGGAATTA---TTGGGCGTAAAGGGTGCGTAGGCGGTTAAATAAGTTT 543
Potato             GCAAGCGTTATCCGGAATTA---TTGGGCGTAAAGGGTGCGTAGGCGGTTAAATAAGTTT 595
Sweet              GCAAGCGTTATCCGGAATTA---TTGGGCGTAAAGGGTGCGTAGGCGGTTAAATAAGTTT 556
Tomato             ------------------------------------------------------------
                                                                               

ColumbiaBasin      ATAATTTAATTTCAGTGCTTAACGCTGTCTTGTTATAGAAACTGTCTTGACTAGAGTGAG 650
Washington         ATAATTTAATTTCAGTGCTTAACGCTGTCTTGTTATAGAAACTGTCTTGACTAGAGTGAG 625
Nebraska           ATGGTATAAGTGCAATGCTCAACGTTGTGATGCTATAAAAACTGT-TTAGCTAGAGTTGG 622
Texas              ATGGTATAAGTGCAATGCTCAACGTTGTGATGCTATAAAAACTGT-TTAGCTAGAGTTGG 622
Capsicuum          ATGGTCTAAGTGCAATGCTCAACATTGTGATGCTATAAAAACGGT-TTAGCTTGAGTAAC 647
Petunia            ATGGTCTAAGTGCAATGCTCAACATTGTGATGCTATAAAAACTGT-TTAGCTAGAGTAAG 507
Withania           ATGGTCTAAGTGCAATGCTCAACATTGTGATGCTATAAAAACTGT-TTAGCTAGAGTAAG 602
Potato             ATGGTCTAAGTGCAATGCTCAACATTGTGATGCTATAAAAACTGT-TTAGCTAGAGTAAG 654
Sweet              ATGGTCTAAGTGCAACGCTCAACGTTGTGATGCTATAAAAACTGT-TTAGCTAGAGTTGG 615
Tomato             ------------------------------------------------------------
                                                                               

ColumbiaBasin      ATAGAGGCAAGCGGAATTCC-ATGTGTAGCGGTAAAATGTGTAAATATATGGAGGAACAC 709
Washington         ATAGAGGCAAGCGGAATTCC-ATGTGTAGCGGTAAAATGTGTAAATATATGGAGGAACAC 684
Nebraska           ATAGAGGCAAGTGGAATTCC-ATGTGTAGTGGTAAAATGCGTAAATATATGGAGGAACAC 681
Texas              ATAGAGGCAAGTGGAATTCC-ATGTGTAGTGGTAAAATGCGTAAATATATGGAGGAACAC 681
Capsicuum          ATGGAGGGACGTGAAATTCCCATGTGTAGTGGTAAAATGCGTAAATATATGGAGGAACAC 707
Petunia            ATAGAGGCAAGTGGAATTCC-ATGTGTAGTGGTAAAATGCGTAAATATATGGAGGAACAC 566
Withania           ATAGAGGCAAGTGGAATTCC-ATGTGTAGTGGTAAAATGCGTAAATATATGGAGGAACAC 661
Potato             ATAGAGGCAAGTGGAATTCC-ATGTGTAGTGGTAAAATGCGTAAATATATGGAGGAACAC 713
Sweet              ATAGAGGCAAGTGGAATTCC-GTGTGTAGTGGTAAAATGCGTAAATATACGGAGGAACAC 674
Tomato             ------------------------------------------------------------
                                                                               

ColumbiaBasin      CAGAAGCGTAGGCGGCTTGCTGGGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGCAGC 769
Washington         CAGAAGCGTAGGCGGCTTGCTGGGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGTAGC 744
Nebraska           CAGAGGCGAAGGCGGCTTGCTGGGTCTTAACTGACGCTGAGGCACGAAAGCGTGGGGAGC 741
Texas              CAGAGGCGAAGGCGGCTTGCTGGGTCTTAACTGACGCTGAGGCACGAAAGCGTGGGGAGC 741
Capsicuum          CAGTAGCGAAGGCGGCTTGCTGGGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGGAGC 767
Petunia            CAGTAGCGAAGGCGGCTTGCTGTGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGGAGC 626
Withania           CAGTAGCGAAGGCGGCTTGCTGGGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGGAGC 721
Potato             CAGTAGCGAAGGCGGCTTGCTGGGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGGAGC 773
Sweet              CAGAAGCGAAGGCGGCTTGCTGGGTCTTAACTGACGCTGAGGCACGAAAGCGTGGGGAGC 734
Tomato             ------------------------------------------------------------
                                                                               

ColumbiaBasin      AAA-CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAGTGTCGGGG 828
Washington         AAA-CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAGTGTCGGGG 803
Nebraska           AAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATGAGTACTAAACGTTGGG- 800
Texas              AAA-CAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATGAGTACTAAACGTTGGG- 799
Capsicuum          AAA-CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAACGTTGGG- 825
Petunia            AAA-CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAACGTTGGT- 684
Withania           AAA-CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAACGTTGGG- 779
Potato             AAA-CAGGAAAAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAACGTTGGG- 831
Sweet              AAA-CAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATAAGTACTAAACGTTGGG- 792
Tomato             ------------------------------------------------------------
                                                                               

ColumbiaBasin      TAAAACTCGGTACTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGT 888
Washington         TAAAACTCGGTACTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGT 863
Nebraska           TAAAAC-CAGTGTTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGT 859
Texas              TAAAAC-CAGTGTTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGT 858
Capsicuum          TAAAAC-CAGTGTTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGT 884
Petunia            TAAAAC-TAGTGTTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGT 743
Withania           TAAAAC-CAGTGTTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGT 838
Potato             TAAAAC-CAGTGTTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGT 890
Sweet              TTAAAC-CAGTGTTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGT 851
Tomato             ------------------------------------------------------------
                                                                               

ColumbiaBasin      ATGAAACTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCG 948
Washington         ATGAAACTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCG 923
Nebraska           ATGAAACTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCG 919
Texas              ATGAAACTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCG 918
Capsicuum          ATGAAACTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCG 944
Petunia            ATGAAACTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCG 803
Withania           ATGAAACTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCG 898
Potato             ATGAAACTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCG 950
Sweet              ATGAAACTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCG 911
Tomato             ------------------------------------------------------------
                                                                               

ColumbiaBasin      AAGATACACGAAAAATCTTACCAGGTCTTGACATACT-CTGCAAAGCTATAGAAATATAG 1007
Washington         AAGATACACGAAAAATCTTACCAGGTCTTGACATACT-CTGCAAAGCTATAGAAATATAG 982
Nebraska           AAGATACCCGAAAAACCTCACCAGGTCTTGACATGCTTTTGCAAAGCTGTAGAAATATAG 979
Texas              AAGATACCCGAAAAACCTCACCAGGTCTTGACATGCTTTTGCAAAGCTGTAGAAATATAG 978
Capsicuum          AAGGTACCCGAAAAACCTCACCAGGTCTTGACATGCTTCTGCAAAGCTGTAGAAACACAG 1004
Petunia            AAGGTACCCGAAAAACCTCACCAGGTCTTGGCATGCTTCTGCAAAGCTGTAGAAACACAG 863
Withania           AAGGTACCCGAAAAACCTCACCAGGTCTTGACATGCTTCTGCAAAGCTGTAGAAACACAG 958
Potato             AAGGTACCCGAAAAACCTCACCAGGTCTTGACATGCTTCTGCAAAGCTGTAGAAACACAG 1010
Sweet              AAGGTACCCGAAAAACCTCACCAGGTCTTGACATGCTTCTGCAAAGCTGTAGAAACACAG 971
Tomato             ------------------------------------------------------------
                                                                               

ColumbiaBasin      TGGAGGTTATCAGGGATACAGGTGGTGCATGGTTGTCGTCAGTTCGTGTCGTGAGATGTT 1067
Washington         TGGAGGTTATCAGGGATACAGGTGGTGCATGGTTGTCGTCAGTTCGTGTCGTGAGATGTT 1042
Nebraska           TGGAGGTTATCAGAAGCACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTT 1039
Texas              TGGAGGTTATCAGAAGCACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTT 1038
Capsicuum          TGGAGGTTATCAGTTGCACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTT 1064
Petunia            TGGAGGTTATCAGTTGCACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTT 923
Withania           TGGAGGTTATCAGTTGCACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTT 1018
Potato             TGGAGGTTATCAGTTGCACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTT 1070
Sweet              TGAAGGTTATCAGTTGCACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTT 1031
Tomato             --------GTCAAAGTAACTGGTTAAAAATTATTATTATCGGCTGTCCGCGGGAG-TAAT 51
                            ***     ** ***     **  ** *  ** * *     ** *** *  *

ColumbiaBasin      AGGTTAAGTCCTAAAACGAGCGCAACCCTTGTCGTTAATTGCCAGCACGTAATGGTGGGG 1127
Washington         AGGTTAAGTCCTAAAACGAGCGCAACCCTTGTCGTTAATTGCCAGCACGTAATGGTGGGG 1102
Nebraska           GGGTTAAGTCCCGCAACGAGCGCAACCCTTGTTGTTAATTGCCATCATTAAGT--TGGGG 1097
Texas              GGGTTAAGTCCCGCAACGAGCGCAACCCTTGTTGTTAATTGCCATCATTAAGT--TGGGG 1096
Capsicuum          GGGTTAAGTCCCGCAACGAGCGCAACCCTTATTGTTAGTTACCAGCACGTAATGGTGGGG 1124
Petunia            GGGTTAAGTCCCGCAACGAGCGCAACCCTTATTGTTAGTTACCAGCACGTAATGGTGGGG 983
Withania           GGGTTAAGTCCCGCAACGAGCGCAACCCTTATTGTTAGTTACCAGCACGTAATGGTGGGG 1078
Potato             GCCTTAAGTCCCGCAACGAGCGCAACCCTTATTGTTAGTTACCAGCACGTAATGGTGGGG 1130
Sweet              GGGTTAAGTCCCGCAACGAGCGCAACCCTTGTCGTTAATTGCCATCATTAAGT--TGGGG 1089
Tomato             ACGTTTTCATCGGGGTTTTGTACACACC----GGCCGATCACCCTTTTAAAAAGTTGGCA 107
                      **     *        *  **  **     *    *  **       *    ***  

ColumbiaBasin      ACTTTAGCGAGACTGCCAATTAAACATT--GGAGGAAGGTGAGGATTACGTCAAATCATC 1185
Washington         ACTTTAGCGAGACTGCCAATTAAACATT--GGAGGAAGGTGAGGATTACGTCAAATCATC 1160
Nebraska           ACTTTAGCAAGACTGCCAATGATAAATT--GGAGGAAGGTGGGGACGACGTCAAATCATC 1155
Texas              ACTTTAGCAAGACTGCCAATGATAAATT--GGAGGAAGGTGGGGACGACGTCAAATCATC 1154
Capsicuum          ACTTTAGCAAGACTGCCAGTGATAAATT--GGAGGAAGGTGGGGACGACGTCAAATCATC 1182
Petunia            ACTTTAGCAAGACTGCCAGTGATAAATT--GGAGGAAGGTGGGGACGACGTCAAATCATC 1041
Withania           ACTTTAGCAAGACTGCCAGTGATAAATT--GGAGGAAGGTGGGGACGACGTCAAATCATC 1136
Potato             ACTTTAGCAAGACTGCCAGTGATAAATT--GGAGGAAGGTGGGGACGACGTCAAATCATC 1188
Sweet              ACTTTAGCGAGACTGCCAATGATAAATT--GGAGGAAGGTGGGGACAACGTCAAATCATC 1147
Tomato             ATACC--CAAAGCCGGTGGCCATAACTTTCGCAAGAAGAGGGAAACCGCTCTAAG----- 160
                   *      * *  * *      * *  **  * * ****  *   *   *   **      

ColumbiaBasin      ATGCCCCTTATGATCTGGGCTACAAACGTGATACAATGGCTGTGACAA-AGAGTAGCTGA 1244
Washington         ATGCCCCTTATGATCTGGGCTGCAAACGTGATACAATGGCTGTGACAA-AGAGTAGCTGA 1219
Nebraska           ATGCCCCTTATGACCTGGGCTACAAACGTGATACAATGGCTGTTACAA-AGGGTAGCTAA 1214
Texas              ATGCCCCTTATGACCTGGGCTACAAACGTGATACAATGGCTGTTACAA-AGGGTAGCTAA 1213
Capsicuum          ATGCCCCTTATGACCTGGGCTACAAACGTGATACAATGGCTGTTACAA-AGGGTAGCTGA 1241
Petunia            ATGCCCCTTATGACCTGGGCTACAAACATGATACAATGGCTGTTACAA-AGGGTAGCTGA 1100
Withania           ATGCCCCTTATGACCTGGGCTACAAACGTGATACAATGGCTGTTACAA-AGGGTAGCTGA 1195
Potato             ATGCCCCTTATGACCTGGGCTACAAACGTGATACAATGGCTGTTACAA-AGGGTAGCTGA 1247
Sweet              ATGCCCCTTATGACCTGGGCTACAAACGTGATACAATGGCTGTTACAA-AGGGTGGCTAA 1206
Tomato             GTAGGGGCGATGATTGCGGTTA-AGCCGTAACAGGGTAACCCTACTGGCAAGGTGGGGAT 219
                    *       ****    ** *  *  * * * *   *  *  *      *  ** *    

ColumbiaBasin      AACGCGAGTTTTTAGCCAATCTCAAAAAAGCAGTCTCAGTTCGGATTGAAGTCTGTAACT 1304
Washington         AACGCGAGTTTTTAGCCAATCTCAAAAAAGCAGTCTCAGTTCGGATTGAAGTCTGTAACT 1279
Nebraska           AGCGTAAGTTTTTGGCGAATCTCAAAAAAGCAGTCTCAGTTCGGATTGAAGTCTGCAACT 1274
Texas              AGCGTAAGTTTTTGGCGAATCTCAAAAAAGCAGTCTCAGTTCGGATTGAAGTCTGCAACT 1273
Capsicuum          AGCGCAAGTTTTTGGCGAATCTCAAAAAAACAGTCTCAGTTCGGATTGAAGTCTGCAACT 1301
Petunia            AGCGCAAGTTTTTGGCGAATCTCAAAAAAACAGTCTCAGTTCGGATTGAAGTCTGCAACT 1160
Withania           AGCGCAAGTTTTTGGCGAATCTCAAAAAAACAGTCTCAGTTCGGATTGAAGTCTGCAACT 1255
Potato             AGCGCAAGTTTTTGGCGAATCTCAAAAAAACAGTCTCAGTTCGGATTGAAGTCTGCAACT 1307
Sweet              AGCGCAAGTTTCTGGCGAATCTCAAAAAAACAGTCTCAGTTCGGATTGAAGTCTGCAACT 1266
Tomato             GGCACCATTTTCCGATTCCATATAATGATATA---------------------------- 251
                     *   * ***            **  *   *                            

ColumbiaBasin      CGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAATCAGCATGTCGCGGTGAATACGTT 1364
Washington         CGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAATCAGCATGTCGCGGTGAATACGTT 1339
Nebraska           CGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAATCAGCATGTCGCGGTGAATACGTT 1334
Texas              CGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAATCAGCATGTCGCGGTGAATACGTT 1333
Capsicuum          CGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAATCAGCATGTCGCGGTGAATACGTT 1361
Petunia            CGACCTCATGAAGTTGGAATCGCTAGTAATCGCGAATCAGCATGTCGCGGTGAATACGTT 1220
Withania           CGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAATCAGCATGTCGCGGTGAATACGTT 1315
Potato             CGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAATCAGCATGTCGCGGTGAATACGTT 1367
Sweet              CGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAATCAGCATGTCGCGGTGAATACGTT 1326
Tomato             ------------------------------------------------------------
                                                                               

ColumbiaBasin      CTCGGGGTTTGTACACACCGCCCGTCAAACCACGAAAGTTAGCAATACCCGAAAGCAGTA 1424
Washington         CTCGGGGTTTGTACACACCGCCCGTCAAACCACGAAAGTTAGCAATACCCGAAAGCAGTA 1399
Nebraska           CTCGGGGTTTGTACACACCGCCCGTCAAACCACGAAAGTTGGCAATACCCAAAGCTGGTG 1394
Texas              CTCGGGGTTTGTACACACCGCCCGTCAAACCACGAAAGTTGGCAATACCCAAAGCTGGTG 1393
Capsicuum          CTCGGGGTTTGTACACACCGCCCGTCAAACCACGAAAGTTGGTAATACCCAAAGCCGGTG 1421
Petunia            GACGGGGTTTGTACACACCGCCCGTCAA-------------------------------- 1248
Withania           CTCGGGGTTTGTACACACCGCCCGTCAAACCACGAAAGTTGGTAATACCCAAAGCCGGTG 1375
Potato             CTCGGGGTTTGTACACACCGCCCGTCAAACCACGAAAGTTGGAAATACCCAAAGCCGGTG 1427
Sweet              CTCGGGGTTTGTACACACCGCCCGTCAAACCACGAAAGTTGGCAATACCCAAAGCCGGTG 1386
Tomato             ------------------------------------------------------------
                                                                               

ColumbiaBasin      GCTTAACTTCGCAAG--AAGAGGGAACTGTCTAAGGTAGGGTTGATGATTGGGGTTAAGT 1482
Washington         GCTTAACTTCGCAAG--AAGAGGGAACTGTCTAAGGTAGGGTTGATGATTGGGGTTAAGT 1457
Nebraska           GCTTAACTTGAGTAATCAAGAGGGAACCATCTAAGGTAGGGTTGATGATTGGGGTTAAGT 1454
Texas              GCTTAACTTGAGTAATCAAGAGGGAACCATCTAAGGTAGGGTTGATGATTGGGGTTAAGT 1453
Capsicuum          GCCTAACTTCGCAAG--AAGAGGGAACCGTCTAAGGTAGGGTCGATGATTGGGGTTAAGT 1479
Petunia            ------------------------------------------------------------
Withania           GCCTAACTTCGCAAG--AAGAGGGAACCGTCTAAGGTAGGGTCGATGATTGGGGTTAAG- 1432
Potato             GCCTAACTTCGCAAG--AAGAGGGAACCGTCTAAGGTAGGTTCGATGATTGGGGTTAAGT 1485
Sweet              GCCTAACTTGTGCAAGCAAGAGGGAGCCGTCTAAGGTAGGGTTGATAATTGGGGTTAAGT 1446
Tomato             ------------------------------------------------------------
                                                                               

ColumbiaBasin      CGTAACAAGGTATCCCTACCGGAAGGTGGGGATGGATCACCTCCTTTCTAAGGACTATAT 1542
Washington         CGTAACAAGGTATCCCTACCGGAAGGTGGGGATGGATCACCTCCTTT------------- 1504
Nebraska           CGTAACAAGGTATCCCTACCGGAAGGTGGGGATGGATCACCTCCTTTCT----------- 1503
Texas              CGTAACAAGGTATCCCTACCGGAAGGTGGGGATGGATCACCTCCTTTCT----------- 1502
Capsicuum          CGTAACAAGGTATCCCTACCGGAA------------------------------------ 1503
Petunia            ------------------------------------------------------------
Withania           ------------------------------------------------------------
Potato             CGTAACAAGGT------------------------------------------------- 1496
Sweet              CGTAACAAGGTATCCCTGCCGGAAGGTGGGGATGGATCACCTCCTTTCT----------- 1495
Tomato             ------------------------------------------------------------
                                                                               

ColumbiaBasin      ATACTAAAACCATCATCTTCAGTTTTGAAAGACTTAAGTAGAAAATAAGTTTTTCTTTTA 1602
Washington         ------------------------------------------------------------
Nebraska           ------------------------------------------------------------
Texas              ------------------------------------------------------------
Capsicuum          ------------------------------------------------------------
Petunia            ------------------------------------------------------------
Withania           ------------------------------------------------------------
Potato             ------------------------------------------------------------
Sweet              ------------------------------------------------------------
Tomato             ------------------------------------------------------------
                                                                               

ColumbiaBasin      AGCGCCAAAGGGCCTATAGCTCAGTTGGTTAGAGCACACGCCTGATAAGCGTGAGGTCGG 1662
Washington         ------------------------------------------------------------
Nebraska           ------------------------------------------------------------
Texas              ------------------------------------------------------------
Capsicuum          ------------------------------------------------------------
Petunia            ------------------------------------------------------------
Withania           ------------------------------------------------------------
Potato             ------------------------------------------------------------
Sweet              ------------------------------------------------------------
Tomato             ------------------------------------------------------------
                                                                               

ColumbiaBasin      TGGTTCAAGTCCATTTAGGCCCACCAAAAAAAGGTCCTGCTTAAAAAGTTCTTTGAAAAG 1722
Washington         ------------------------------------------------------------
Nebraska           ------------------------------------------------------------
Texas              ------------------------------------------------------------
Capsicuum          ------------------------------------------------------------
Petunia            ------------------------------------------------------------
Withania           ------------------------------------------------------------
Potato             ------------------------------------------------------------
Sweet              ------------------------------------------------------------
Tomato             ------------------------------------------------------------
                                                                               

ColumbiaBasin      TAGATGAACATGCCTTAAAACTTTCATAAAGTTGAAGGAAGTAAGGGCATATAGTGGATG 1782
Washington         ------------------------------------------------------------
Nebraska           ------------------------------------------------------------
Texas              ------------------------------------------------------------
Capsicuum          ------------------------------------------------------------
Petunia            ------------------------------------------------------------
Withania           ------------------------------------------------------------
Potato             ------------------------------------------------------------
Sweet              ------------------------------------------------------------
Tomato             ------------------------------------------------------------
                                                                               

ColumbiaBasin      TCCTTGGCACTAAGAGCCGATGAAGGACG 1811
Washington         -----------------------------
Nebraska           -----------------------------
Texas              -----------------------------
Capsicuum          -----------------------------
Petunia            -----------------------------
Withania           -----------------------------
Potato             -----------------------------
Sweet              -----------------------------
Tomato             -----------------------------